-
1
-
-
17844377963
-
Optimising the use of beta-adrenoceptor antagonists in coronary artery disease
-
Ellison KE, Gandhi G. Optimising the use of beta-adrenoceptor antagonists in coronary artery disease. Drugs 2005; 65: 787-797.
-
(2005)
Drugs
, vol.65
, pp. 787-797
-
-
Ellison, K.E.1
Gandhi, G.2
-
2
-
-
25444444202
-
Computational modeling approaches to structure-function analysis of G protein-coupled receptors
-
Fanelli F, De Benedetti PG. Computational modeling approaches to structure-function analysis of G protein-coupled receptors. Chem Rev 2005; 105: 3297-3351.
-
(2005)
Chem Rev
, vol.105
, pp. 3297-3351
-
-
Fanelli, F.1
De Benedetti, P.G.2
-
3
-
-
0037020329
-
Drug design strategies for targeting G-protein-coupled receptors
-
Klabunde T, Hessler G. Drug design strategies for targeting G-protein-coupled receptors. Chembiochem 2002; 3: 928-944.
-
(2002)
Chembiochem
, vol.3
, pp. 928-944
-
-
Klabunde, T.1
Hessler, G.2
-
4
-
-
0037235663
-
Protein-based virtual screening of chemical databases. II. Are homology models of G-protein coupled receptors suitable targets?
-
Bissantz C, Bernard P, Hibert M, Rognan D. Protein-based virtual screening of chemical databases. II. Are homology models of G-protein coupled receptors suitable targets? Proteins 2003; 50: 5-25.
-
(2003)
Proteins
, vol.50
, pp. 5-25
-
-
Bissantz, C.1
Bernard, P.2
Hibert, M.3
Rognan, D.4
-
5
-
-
78649537557
-
Predicting the accuracy of protein-ligand docking on homology models
-
Bordogna A, Pandini A, Bonati L. Predicting the accuracy of protein-ligand docking on homology models. J Comput Chem 2011; 32: 81-98.
-
(2011)
J Comput Chem
, vol.32
, pp. 81-98
-
-
Bordogna, A.1
Pandini, A.2
Bonati, L.3
-
6
-
-
72949087796
-
Molecular docking screens using comparative models of proteins
-
Fan H, Irwin JJ, Webb BM, Klebe G, Shoichet BK, Sali A. Molecular docking screens using comparative models of proteins. J Chem Inf Model 2009; 49: 2512-2527.
-
(2009)
J Chem Inf Model
, vol.49
, pp. 2512-2527
-
-
Fan, H.1
Irwin, J.J.2
Webb, B.M.3
Klebe, G.4
Shoichet, B.K.5
Sali, A.6
-
7
-
-
66249129665
-
Evaluation of homology modeling of G-protein-coupled receptors in light of the A(2A) adenosine receptor crystallographic structure
-
Ivanov AA, Barak D, Jacobson KA. Evaluation of homology modeling of G-protein-coupled receptors in light of the A(2A) adenosine receptor crystallographic structure. J Med Chem 2009; 52: 3284-3292.
-
(2009)
J Med Chem
, vol.52
, pp. 3284-3292
-
-
Ivanov, A.A.1
Barak, D.2
Jacobson, K.A.3
-
8
-
-
33244475355
-
Screening drug-like compounds by docking to homology models: a systematic study
-
Kairys V, Fernandes MX, Gilson MK. Screening drug-like compounds by docking to homology models: a systematic study. JChem Inf Model 2006; 46: 365-379.
-
(2006)
JChem Inf Model
, vol.46
, pp. 365-379
-
-
Kairys, V.1
Fernandes, M.X.2
Gilson, M.K.3
-
9
-
-
0038460858
-
Information decay in molecular docking screens against holo, apo, and modeled conformations of enzymes
-
McGovern SL, Shoichet BK. Information decay in molecular docking screens against holo, apo, and modeled conformations of enzymes. J Med Chem 2003; 46: 2895-2907.
-
(2003)
J Med Chem
, vol.46
, pp. 2895-2907
-
-
McGovern, S.L.1
Shoichet, B.K.2
-
11
-
-
1542267836
-
Predicted 3D structure for the human beta 2 adrenergic receptor and its binding site for agonists and antagonists
-
Freddolino PL, Kalani MY, Vaidehi N, Floriano WB, Hall SE, Trabanino RJ, Kam VW, Goddard WA, III. Predicted 3D structure for the human beta 2 adrenergic receptor and its binding site for agonists and antagonists. Proc Natl Acad Sci U S A 2004; 101: 2736-2741.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 2736-2741
-
-
Freddolino, P.L.1
Kalani, M.Y.2
Vaidehi, N.3
Floriano, W.B.4
Hall, S.E.5
Trabanino, R.J.6
Kam, V.W.7
Goddard III, W.A.8
-
12
-
-
0141992805
-
Three-dimensional models for beta-adrenergic receptor complexes with agonists and antagonists
-
Furse KE, Lybrand TP. Three-dimensional models for beta-adrenergic receptor complexes with agonists and antagonists. J Med Chem 2003; 46: 4450-4462.
-
(2003)
J Med Chem
, vol.46
, pp. 4450-4462
-
-
Furse, K.E.1
Lybrand, T.P.2
-
13
-
-
0029914711
-
Three-dimensional models for agonist and antagonist complexes with beta 2 adrenergic receptor
-
Kontoyianni M, DeWeese C, Penzotti JE, Lybrand TP. Three-dimensional models for agonist and antagonist complexes with beta 2 adrenergic receptor. J Med Chem 1996; 39: 4406-4420.
-
(1996)
J Med Chem
, vol.39
, pp. 4406-4420
-
-
Kontoyianni, M.1
DeWeese, C.2
Penzotti, J.E.3
Lybrand, T.P.4
-
14
-
-
33644874394
-
MODBASE: a database of annotated comparative protein structure models and associated resources
-
Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, Marti-Renom M, Karchin R, Webb BM, Eramian D, Shen MY, Kelly L, Melo F, Sali A. MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res 2006; 34: D291-D295.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Pieper, U.1
Eswar, N.2
Davis, F.P.3
Braberg, H.4
Madhusudhan, M.S.5
Rossi, A.6
Marti-Renom, M.7
Karchin, R.8
Webb, B.M.9
Eramian, D.10
Shen, M.Y.11
Kelly, L.12
Melo, F.13
Sali, A.14
-
15
-
-
33645498334
-
Dynamic behavior of fully solvated beta2-adrenergic receptor, embedded in the membrane with bound agonist or antagonist
-
Spijker P, Vaidehi N, Freddolino PL, Hilbers PA, Goddard WA, III. Dynamic behavior of fully solvated beta2-adrenergic receptor, embedded in the membrane with bound agonist or antagonist. Proc Natl Acad Sci U S A 2006; 103: 4882-4887.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 4882-4887
-
-
Spijker, P.1
Vaidehi, N.2
Freddolino, P.L.3
Hilbers, P.A.4
Goddard III, W.A.5
-
16
-
-
0025398721
-
WHAT IF: a molecular modeling and drug design program
-
Vriend G. WHAT IF: a molecular modeling and drug design program. J Mol Graph 1990; 8: 52-56, 29.
-
(1990)
J Mol Graph
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
17
-
-
33645793799
-
Structure modeling of all identified G protein-coupled receptors in the human genome
-
Zhang Y, Devries ME, Skolnick J. Structure modeling of all identified G protein-coupled receptors in the human genome. PLoS Comput Biol 2006; 2: e13.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Zhang, Y.1
Devries, M.E.2
Skolnick, J.3
-
18
-
-
3843095917
-
G protein-coupled receptors: in silico drug discovery in 3D
-
Becker OM, Marantz Y, Shacham S, Inbal B, Heifetz A, Kalid O, Bar-Haim S, Warshaviak D, Fichman M, Noiman S. G protein-coupled receptors: in silico drug discovery in 3D. Proc Natl Acad Sci U S A 2004; 101: 11304-11309.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 11304-11309
-
-
Becker, O.M.1
Marantz, Y.2
Shacham, S.3
Inbal, B.4
Heifetz, A.5
Kalid, O.6
Bar-Haim, S.7
Warshaviak, D.8
Fichman, M.9
Noiman, S.10
-
19
-
-
34547691007
-
GPCR structure-based virtual screening approach for CB2 antagonist search
-
Chen JZ, Wang J, Xie XQ. GPCR structure-based virtual screening approach for CB2 antagonist search. J Chem Inf Model 2007; 47: 1626-1637.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 1626-1637
-
-
Chen, J.Z.1
Wang, J.2
Xie, X.Q.3
-
20
-
-
13944255377
-
Structure-based drug discovery using GPCR homology modeling: successful virtual screening for antagonists of the alpha1A adrenergic receptor
-
Evers A, Klabunde T. Structure-based drug discovery using GPCR homology modeling: successful virtual screening for antagonists of the alpha1A adrenergic receptor. J Med Chem 2005; 48: 1088-1097.
-
(2005)
J Med Chem
, vol.48
, pp. 1088-1097
-
-
Evers, A.1
Klabunde, T.2
-
21
-
-
6044260116
-
Successful virtual screening for a submicromolar antagonist of the neurokinin-1 receptor based on a ligand-supported homology model
-
Evers A, Klebe G. Successful virtual screening for a submicromolar antagonist of the neurokinin-1 receptor based on a ligand-supported homology model. J Med Chem 2004; 47: 5381-5392.
-
(2004)
J Med Chem
, vol.47
, pp. 5381-5392
-
-
Evers, A.1
Klebe, G.2
-
22
-
-
77649196223
-
GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex
-
Katritch V, Rueda M, Lam PC, Yeager M, Abagyan R. GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex. Proteins 2010; 78: 197-211.
-
(2010)
Proteins
, vol.78
, pp. 197-211
-
-
Katritch, V.1
Rueda, M.2
Lam, P.C.3
Yeager, M.4
Abagyan, R.5
-
23
-
-
78651411166
-
Structure of a nanobody-stabilized active state of the beta(2) adrenoceptor
-
Rasmussen SG, Choi HJ, Fung JJ, Pardon E, Casarosa P, Chae PS, Devree BT, Rosenbaum DM, Thian FS, Kobilka TS, Schnapp A, Konetzki I, Sunahara RK, Gellman SH, Pautsch A, Steyaert J, Weis WI, Kobilka BK. Structure of a nanobody-stabilized active state of the beta(2) adrenoceptor. Nature 2011; 469: 175-180.
-
(2011)
Nature
, vol.469
, pp. 175-180
-
-
Rasmussen, S.G.1
Choi, H.J.2
Fung, J.J.3
Pardon, E.4
Casarosa, P.5
Chae, P.S.6
Devree, B.T.7
Rosenbaum, D.M.8
Thian, F.S.9
Kobilka, T.S.10
Schnapp, A.11
Konetzki, I.12
Sunahara, R.K.13
Gellman, S.H.14
Pautsch, A.15
Steyaert, J.16
Weis, W.I.17
Kobilka, B.K.18
-
24
-
-
78651399683
-
Structure and function of an irreversible agonist-beta(2) adrenoceptor complex
-
Rosenbaum DM, Zhang C, Lyons JA, Holl R, Aragao D, Arlow DH, Rasmussen SG, Choi HJ, Devree BT, Sunahara RK, Chae PS, Gellman SH, Dror RO, Shaw DE, Weis WI, Caffrey M, Gmeiner P, Kobilka BK. Structure and function of an irreversible agonist-beta(2) adrenoceptor complex. Nature 2011; 469: 236-240.
-
(2011)
Nature
, vol.469
, pp. 236-240
-
-
Rosenbaum, D.M.1
Zhang, C.2
Lyons, J.A.3
Holl, R.4
Aragao, D.5
Arlow, D.H.6
Rasmussen, S.G.7
Choi, H.J.8
Devree, B.T.9
Sunahara, R.K.10
Chae, P.S.11
Gellman, S.H.12
Dror, R.O.13
Shaw, D.E.14
Weis, W.I.15
Caffrey, M.16
Gmeiner, P.17
Kobilka, B.K.18
-
25
-
-
34548476934
-
Critical role for the second extracellular loop in the binding of both orthosteric and allosteric G protein-coupled receptor ligands
-
Avlani VA, Gregory KJ, Morton CJ, Parker MW, Sexton PM, Christopoulos A. Critical role for the second extracellular loop in the binding of both orthosteric and allosteric G protein-coupled receptor ligands. J Biol Chem 2007; 282: 25677-25686.
-
(2007)
J Biol Chem
, vol.282
, pp. 25677-25686
-
-
Avlani, V.A.1
Gregory, K.J.2
Morton, C.J.3
Parker, M.W.4
Sexton, P.M.5
Christopoulos, A.6
-
26
-
-
84862793502
-
-
OpenEye Scientific Software Inc., New Mexico, USA.
-
OpenEye Scientific Software Inc. Santa Fe, New Mexico, USA. 2006.
-
(2006)
Santa Fe
-
-
-
27
-
-
84862802384
-
-
Molecular Operating Environment. Chemical Computing Group Inc., Montreal, Canada.
-
Molecular Operating Environment. Chemical Computing Group Inc., Montreal, Canada. 2007.
-
(2007)
-
-
-
28
-
-
77955164979
-
-
World Drug Index. New York, New York, USA
-
World Drug Index. Thomson Reuters. New York, New York, USA. 2004.
-
(2004)
Thomson Reuters
-
-
-
30
-
-
84862802385
-
-
Sybyl8.0. Tripos International. St. Louis, Missouri, USA
-
Sybyl8.0. Tripos International. St. Louis, Missouri, USA. 2007.
-
(2007)
-
-
-
31
-
-
36448995359
-
High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor
-
Cherezov V, Rosenbaum DM, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Kuhn P, Weis WI, Kobilka BK, Stevens RC. High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor. Science 2007; 318: 1258-1265.
-
(2007)
Science
, vol.318
, pp. 1258-1265
-
-
Cherezov, V.1
Rosenbaum, D.M.2
Hanson, M.A.3
Rasmussen, S.G.4
Thian, F.S.5
Kobilka, T.S.6
Choi, H.J.7
Kuhn, P.8
Weis, W.I.9
Kobilka, B.K.10
Stevens, R.C.11
-
32
-
-
36248970132
-
Crystal structure of the human beta2 adrenergic G-protein-coupled receptor
-
Rasmussen SG, Choi HJ, Rosenbaum DM, Kobilka TS, Thian FS, Edwards PC, Burghammer M, Ratnala VR, Sanishvili R, Fischetti RF, Schertler GF, Weis WI, Kobilka BK. Crystal structure of the human beta2 adrenergic G-protein-coupled receptor. Nature 2007; 450: 383-387.
-
(2007)
Nature
, vol.450
, pp. 383-387
-
-
Rasmussen, S.G.1
Choi, H.J.2
Rosenbaum, D.M.3
Kobilka, T.S.4
Thian, F.S.5
Edwards, P.C.6
Burghammer, M.7
Ratnala, V.R.8
Sanishvili, R.9
Fischetti, R.F.10
Schertler, G.F.11
Weis, W.I.12
Kobilka, B.K.13
-
33
-
-
36448978229
-
GPCR engineering yields high-resolution structural insights into beta2-adrenergic receptor function
-
Rosenbaum DM, Cherezov V, Hanson MA, Rasmussen SG, Thian FS, Kobilka TS, Choi HJ, Yao XJ, Weis WI, Stevens RC, Kobilka BK. GPCR engineering yields high-resolution structural insights into beta2-adrenergic receptor function. Science 2007; 318: 1266-1273.
-
(2007)
Science
, vol.318
, pp. 1266-1273
-
-
Rosenbaum, D.M.1
Cherezov, V.2
Hanson, M.A.3
Rasmussen, S.G.4
Thian, F.S.5
Kobilka, T.S.6
Choi, H.J.7
Yao, X.J.8
Weis, W.I.9
Stevens, R.C.10
Kobilka, B.K.11
-
34
-
-
33646462126
-
Development of quantitative structure-binding affinity relationship models based on novel geometrical chemical descriptors of the protein-ligand interfaces
-
Zhang S, Golbraikh A, Tropsha A. Development of quantitative structure-binding affinity relationship models based on novel geometrical chemical descriptors of the protein-ligand interfaces. J Med Chem 2006; 49: 2713-2724.
-
(2006)
J Med Chem
, vol.49
, pp. 2713-2724
-
-
Zhang, S.1
Golbraikh, A.2
Tropsha, A.3
-
35
-
-
33646251585
-
Chemometric analysis of ligand receptor complementarity: identifying complementary ligands based on receptor information (CoLiBRI)
-
Oloff S, Zhang S, Sukumar N, Breneman C, Tropsha A. Chemometric analysis of ligand receptor complementarity: identifying complementary ligands based on receptor information (CoLiBRI). J Chem Inf Model 2006; 46: 844-851.
-
(2006)
J Chem Inf Model
, vol.46
, pp. 844-851
-
-
Oloff, S.1
Zhang, S.2
Sukumar, N.3
Breneman, C.4
Tropsha, A.5
-
36
-
-
43949095157
-
On the applicability of GPCR homology models to computer-aided drug discovery: a comparison between in silico and crystal structures of the beta2-adrenergic receptor
-
Costanzi S. On the applicability of GPCR homology models to computer-aided drug discovery: a comparison between in silico and crystal structures of the beta2-adrenergic receptor. J Med Chem 2008; 51: 2907-2914.
-
(2008)
J Med Chem
, vol.51
, pp. 2907-2914
-
-
Costanzi, S.1
-
37
-
-
79751525956
-
Docking-based virtual screening for ligands of G protein-coupled receptors: not only crystal structures but also in silico models
-
Vilar S, Ferino G, Phatak SS, Berk B, Cavasotto CN, Costanzi S. Docking-based virtual screening for ligands of G protein-coupled receptors: not only crystal structures but also in silico models. J Mol Graph Model 2011; 29: 614-623.
-
(2011)
J Mol Graph Model
, vol.29
, pp. 614-623
-
-
Vilar, S.1
Ferino, G.2
Phatak, S.S.3
Berk, B.4
Cavasotto, C.N.5
Costanzi, S.6
-
38
-
-
80051521545
-
Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment
-
Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R. Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment. Structure 2011; 19: 1108-1126.
-
(2011)
Structure
, vol.19
, pp. 1108-1126
-
-
Kufareva, I.1
Rueda, M.2
Katritch, V.3
Stevens, R.C.4
Abagyan, R.5
-
39
-
-
67349088738
-
Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008
-
Michino M, Abola E, Brooks CL, III, Dixon JS, Moult J, Stevens RC. Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008. Nat Rev Drug Discov 2009; 8: 455-463.
-
(2009)
Nat Rev Drug Discov
, vol.8
, pp. 455-463
-
-
Michino, M.1
Abola, E.2
Brooks III, C.L.3
Dixon, J.S.4
Moult, J.5
Stevens, R.C.6
-
40
-
-
44649172481
-
A specific cholesterol binding site is established by the 2.8 Å structure of the human beta2-adrenergic receptor
-
Hanson MA, Cherezov V, Griffith MT, Roth CB, Jaakola VP, Chien EY, Velasquez J, Kuhn P, Stevens RC. A specific cholesterol binding site is established by the 2.8 Å structure of the human beta2-adrenergic receptor. Structure 2008; 16: 897-905.
-
(2008)
Structure
, vol.16
, pp. 897-905
-
-
Hanson, M.A.1
Cherezov, V.2
Griffith, M.T.3
Roth, C.B.4
Jaakola, V.P.5
Chien, E.Y.6
Velasquez, J.7
Kuhn, P.8
Stevens, R.C.9
-
41
-
-
56749103466
-
The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist
-
Jaakola VP, Griffith MT, Hanson MA, Cherezov V, Chien EY, Lane JR, Ijzerman AP, Stevens RC. The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist. Science 2008; 322: 1211-1217.
-
(2008)
Science
, vol.322
, pp. 1211-1217
-
-
Jaakola, V.P.1
Griffith, M.T.2
Hanson, M.A.3
Cherezov, V.4
Chien, E.Y.5
Lane, J.R.6
Ijzerman, A.P.7
Stevens, R.C.8
-
42
-
-
0034604451
-
Crystal structure of rhodopsin: a G protein-coupled receptor
-
Palczewski K, Kumasaka T, Hori T, Behnke CA, Motoshima H, Fox BA, Le T, I, Teller DC, Okada T, Stenkamp RE, Yamamoto M, Miyano M. Crystal structure of rhodopsin: a G protein-coupled receptor. Science 2000; 289: 739-745.
-
(2000)
Science
, vol.289
, pp. 739-745
-
-
Palczewski, K.1
Kumasaka, T.2
Hori, T.3
Behnke, C.A.4
Motoshima, H.5
Fox, B.A.6
Le, T.7
Teller, I.8
Okada, T.9
Stenkamp, R.E.10
Yamamoto, M.11
Miyano, M.12
-
43
-
-
47049130668
-
Crystal structure of the ligand-free G-protein-coupled receptor opsin
-
Park JH, Scheerer P, Hofmann KP, Choe HW, Ernst OP. Crystal structure of the ligand-free G-protein-coupled receptor opsin. Nature 2008; 454: 183-187.
-
(2008)
Nature
, vol.454
, pp. 183-187
-
-
Park, J.H.1
Scheerer, P.2
Hofmann, K.P.3
Choe, H.W.4
Ernst, O.P.5
-
44
-
-
47949129742
-
Structure of a beta1-adrenergic G-protein-coupled receptor
-
Warne T, Serrano-Vega MJ, Baker JG, Moukhametzianov R, Edwards PC, Henderson R, Leslie AG, Tate CG, Schertler GF. Structure of a beta1-adrenergic G-protein-coupled receptor. Nature 2008; 454: 486-491.
-
(2008)
Nature
, vol.454
, pp. 486-491
-
-
Warne, T.1
Serrano-Vega, M.J.2
Baker, J.G.3
Moukhametzianov, R.4
Edwards, P.C.5
Henderson, R.6
Leslie, A.G.7
Tate, C.G.8
Schertler, G.F.9
-
45
-
-
85027927015
-
Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists
-
Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC. Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists. Science 2010; 330: 1066-1071.
-
(2010)
Science
, vol.330
, pp. 1066-1071
-
-
Wu, B.1
Chien, E.Y.2
Mol, C.D.3
Fenalti, G.4
Liu, W.5
Katritch, V.6
Abagyan, R.7
Brooun, A.8
Wells, P.9
Bi, F.C.10
Hamel, D.J.11
Kuhn, P.12
Handel, T.M.13
Cherezov, V.14
Stevens, R.C.15
-
46
-
-
0034787251
-
Three-dimensional representations of G protein-coupled receptor structures and mechanisms
-
Visiers I, Ballesteros JA, Weinstein H. Three-dimensional representations of G protein-coupled receptor structures and mechanisms. Methods Enzymol 2002; 343: 329-371.
-
(2002)
Methods Enzymol
, vol.343
, pp. 329-371
-
-
Visiers, I.1
Ballesteros, J.A.2
Weinstein, H.3
-
47
-
-
33644876210
-
DrugBank: a comprehensive resource for in silico drug discovery and exploration
-
Wishart DS, Knox C, Guo AC, Shrivastava S, Hassanali M, Stothard P, Chang Z, Woolsey J. DrugBank: a comprehensive resource for in silico drug discovery and exploration. Nucleic Acids Res 2006; 34: D668-D672.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Shrivastava, S.4
Hassanali, M.5
Stothard, P.6
Chang, Z.7
Woolsey, J.8
-
48
-
-
33644875256
-
GLIDA: GPCR-ligand database for chemical genomic drug discovery
-
Okuno Y, Yang J, Taneishi K, Yabuuchi H, Tsujimoto G. GLIDA: GPCR-ligand database for chemical genomic drug discovery. Nucleic Acids Res 2006; 34: D673-D677.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Okuno, Y.1
Yang, J.2
Taneishi, K.3
Yabuuchi, H.4
Tsujimoto, G.5
-
49
-
-
0033861845
-
The multiplicity of serotonin receptors: Uselessly diverse molecules or an embarrasment of riches?
-
Roth BL, Lopez E, Patel ES, Kroeze WK. The multiplicity of serotonin receptors: Uselessly diverse molecules or an embarrasment of riches? Neuroscientist 2006; 6: 252-262.
-
(2006)
Neuroscientist
, vol.6
, pp. 252-262
-
-
Roth, B.L.1
Lopez, E.2
Patel, E.S.3
Kroeze, W.K.4
-
50
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000; 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
51
-
-
0032600640
-
A knowledge-based approach in designing combinatorial or medicinal chemistry libraries for drug discovery. I. A qualitative and quantitative characterization of known drug databases
-
Ghose AK, Viswanadhan VN, Wendoloski JJ. A knowledge-based approach in designing combinatorial or medicinal chemistry libraries for drug discovery. I. A qualitative and quantitative characterization of known drug databases. J Comb Chem 1999; 1: 55-68.
-
(1999)
J Comb Chem
, vol.1
, pp. 55-68
-
-
Ghose, A.K.1
Viswanadhan, V.N.2
Wendoloski, J.J.3
-
52
-
-
12144289984
-
Glide: a new approach for rapid, accurate docking and scoring. I. Method and assessment of docking accuracy
-
Friesner RA, Banks JL, Murphy RB, Halgren TA, Klicic JJ, Mainz DT, Repasky MP, Knoll EH, Shelley M, Perry JK, Shaw DE, Francis P, Shenkin PS. Glide: a new approach for rapid, accurate docking and scoring. I. Method and assessment of docking accuracy. J Med Chem 2004; 47: 1739-1749.
-
(2004)
J Med Chem
, vol.47
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
53
-
-
33947716119
-
A semiempirical free energy force field with charge-based desolvation
-
Huey R, Morris GM, Olson AJ, Goodsell DS. A semiempirical free energy force field with charge-based desolvation. J Comput Chem 2007; 28: 1145-1152.
-
(2007)
J Comput Chem
, vol.28
, pp. 1145-1152
-
-
Huey, R.1
Morris, G.M.2
Olson, A.J.3
Goodsell, D.S.4
-
54
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function
-
Morris GM, Goodsell DS, Halliday RS, Huey R, Hart WE, Belew RK, Olson AJ. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function. J Comput Chem 1998; 19: 1639-1662.
-
(1998)
J Comput Chem
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
55
-
-
34250892548
-
eHiTS: a new fast, exhaustive flexible ligand docking system
-
Zsoldos Z, Reid D, Simon A, Sadjad SB, Johnson AP. eHiTS: a new fast, exhaustive flexible ligand docking system. J Mol Graph Model 2007; 26: 198-212.
-
(2007)
J Mol Graph Model
, vol.26
, pp. 198-212
-
-
Zsoldos, Z.1
Reid, D.2
Simon, A.3
Sadjad, S.B.4
Johnson, A.P.5
-
56
-
-
35248846115
-
2D depiction of protein-ligand complexes
-
Clark AM, Labute P. 2D depiction of protein-ligand complexes. J Chem Inf Model 2007; 47: 1933-1944.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 1933-1944
-
-
Clark, A.M.1
Labute, P.2
-
58
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. The protein data bank. Nucleic acids Res 2000; 28: 235.
-
(2000)
Nucleic acids Res
, vol.28
, pp. 235
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
59
-
-
34547821455
-
Molecular modeling of the binding of pheromone biosynthesis activating neuropeptide to its receptor
-
Stern PS, Yu L, Choi MY, Jurenka RA, Becker L, Rafaeli A. Molecular modeling of the binding of pheromone biosynthesis activating neuropeptide to its receptor. J Insect Physiol 2007; 53: 803-818.
-
(2007)
J Insect Physiol
, vol.53
, pp. 803-818
-
-
Stern, P.S.1
Yu, L.2
Choi, M.Y.3
Jurenka, R.A.4
Becker, L.5
Rafaeli, A.6
-
60
-
-
67650239912
-
Analysis of full and partial agonists binding to beta2-adrenergic receptor suggests a role of transmembrane helix V in agonist-specific conformational changes
-
Katritch V, Reynolds KA, Cherezov V, Hanson MA, Roth CB, Yeager M, Abagyan R. Analysis of full and partial agonists binding to beta2-adrenergic receptor suggests a role of transmembrane helix V in agonist-specific conformational changes. J Mol Recognit 2009; 22: 307-318.
-
(2009)
J Mol Recognit
, vol.22
, pp. 307-318
-
-
Katritch, V.1
Reynolds, K.A.2
Cherezov, V.3
Hanson, M.A.4
Roth, C.B.5
Yeager, M.6
Abagyan, R.7
-
61
-
-
33644781659
-
Opsin is present as dimers in COS1 cells: identification of amino acids at the dimeric interface
-
Kota P, Reeves PJ, Rajbhandary UL, Khorana HG. Opsin is present as dimers in COS1 cells: identification of amino acids at the dimeric interface. Proc Natl Acad Sci U S A 2006; 103: 3054-3059.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 3054-3059
-
-
Kota, P.1
Reeves, P.J.2
Rajbhandary, U.L.3
Khorana, H.G.4
-
62
-
-
0038159530
-
Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes
-
Liang Y, Fotiadis D, Filipek S, Saperstein DA, Palczewski K, Engel A. Organization of the G protein-coupled receptors rhodopsin and opsin in native membranes. J Biol Chem 2003; 278: 21655-21662.
-
(2003)
J Biol Chem
, vol.278
, pp. 21655-21662
-
-
Liang, Y.1
Fotiadis, D.2
Filipek, S.3
Saperstein, D.A.4
Palczewski, K.5
Engel, A.6
-
64
-
-
34247272948
-
Evaluating virtual screening methods: good and bad metrics for the "early recognition" problem
-
Truchon JF, Bayly CI. Evaluating virtual screening methods: good and bad metrics for the "early recognition" problem. J Chem Inf Model 2007; 47: 488-508.
-
(2007)
J Chem Inf Model
, vol.47
, pp. 488-508
-
-
Truchon, J.F.1
Bayly, C.I.2
-
65
-
-
38949192595
-
A crystal clear view of the beta2-adrenergic receptor
-
Lefkowitz RJ, Sun JP, Shukla AK. A crystal clear view of the beta2-adrenergic receptor. Nat Biotechnol 2008; 26: 189-191.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 189-191
-
-
Lefkowitz, R.J.1
Sun, J.P.2
Shukla, A.K.3
|