Only skin deep: Shared genetic response to the deadly chytrid fungus in susceptible frog species

Molecular Ecology

Volumn 21, Issue 13, 2012, Pages 3110-3120

  Rosenblum, Erica Bree ^a,b   Poorten, Thomas J ^a   Settles, Matthew ^a   Murdoch, Gordon K ^a  

^a UNIVERSITY OF IDAHO   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

amphibians; disease biology; host parasite interactions; transcriptomics

Indexed keywords

TRANSCRIPTOME;

ANIMAL; ARTICLE; CHYTRIDIOMYCETES; DNA MICROARRAY; ENDANGERED SPECIES; GENETICS; IMMUNOLOGY; MICROBIOLOGY; MYCOSIS; PATHOGENICITY; PATHOLOGY; RANIDAE; SKIN; XENOPUS;

ANIMALS; CHYTRIDIOMYCOTA; ENDANGERED SPECIES; MYCOSES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RANIDAE; SKIN; TRANSCRIPTOME; XENOPUS;

AMPHIBIA; ANURA; BATRACHOCHYTRIUM DENDROBATIDIS; FUNGI; RANA MUSCOSA; XENOPUS TROPICALIS;

EID: 84862732420     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2012.05481.x     Document Type: Article

References (40)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
2. Baeuerle PA, Henkel T, (1994) Function and activation of NF-kappa B in the immune system. Annual Review of Immunology, 12, 141-179.
3. Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate-a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B, 57, 289-300.
4. Berger L, Speare R, Daszak P, et al. (1998) Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America. Proceedings of the National Academy of Sciences of the United States of America, 95, 9031-9036.
5. Berger L, Marantelli G, Skerratt LL, Speare R, (2005) Virulence of the amphibian chytrid fungus Batrachochytrium dendrobatidis varies with the strain. Diseases of Aquatic Organisms, 68, 47-50.
6. Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19, 185-193.
7. Boyle DG, Boyle DB, Olsen V, Morgan JAT, Hyatt AD, (2004) Rapid quantitative detection of chytridiomycosis (Batrachochytrium dendrobatidis) in amphibian samples using real-time Taqman PCR assay. Diseases of Aquatic Organisms, 60, 141-148.
8. Briggs CJ, Vredenburg VT, Knapp RA, Rachowicz LJ, (2005) Investigating the population-level effects of chytridiomycosis, a fungal disease of amphibians. Ecology, 86, 3149-3159.
9. Briggs CJ, Knapp RA, Vredenburg VT, (2010) Enzootic and epizootic dynamics of the chytrid fungal pathogen of amphibians. Proceedings of the National Academy of Sciences of the United States of America, 107, 9695-9970.
10. Carver S, Bell BD, Waldman B, (2010) Does chytridiomycosis disrupt amphibian skin function? Copeia, 2010, 487-495.
11. Daszak P, Strieby A, Cunningham AA, Longcore JE, Brown CC, Porter D, (2004) Experimental evidence that the bullfrog (Rana catesbeiana) is a potential carrier of chytridiomycosis, an emerging fungal disease of amphibians. Herpetological Journal, 14, 201-207.
12. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YE, Antonellis KJ, Scherf U, Speed TP, (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4, 249-264.
13. Kilpatrick AM, Briggs CJ, Daszak P, (2010) The ecology and impact of chytridiomycosis: an emerging disease of amphibians. Trends in Ecology and Evolution, 25, 109-118.
14. Lips KR, Brem F, Brenes R, et al. (2006) Emerging infectious disease and the loss of biodiversity in a Neotropical amphibian community. Proceedings of the National Academy of Sciences of the United States of America, 103, 3165-3170.
15. Longcore JE, Pessier AP, Nichols DK, (1999) Batrachochytrium dendrobatidis gen et sp nov, a chytrid pathogenic to amphibians. Mycologia, 91, 219-227.
16. Marcum RD, St-Hilaire S, Murphy PJ, Rodnick KJ, (2010) Effects of Batrachochytrium dendrobatidis infection on ion concentrations in the boreal toad Anaxyrus (Bufo) boreas boreas. Diseases of Aquatic Organisms, 91, 17-21.
17. Mohneke M, Roedel MO, (2009) Declining amphibian populations and possible ecological consequences-a review. Salamandra, 45, 203-210.
18. Morey JS, Ryan JC, Van Dolah FM, (2006) Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biological Procedures Online, 8, 175-193.
19. Myrkov I, Stojanovic I, Stosic-Grujicic S, Glamoclija J, Zolotarevski L, Kataranovski D, Kataranovski M, (2010) Splenic and lung response to nonlethal systemic Aspergillus fumigatus infection in C57BL/6 mice. Medical Mycology, 48, 735-743.
20. Owais M, Ansari MA, Ahmad I, Zia Q, Pierard G, Chauhan A, (2010) Innate immunity in pathogenesis and treatment of dermatomycosis. In: Combating Fungal Infections: Problems and Remedy, editors:, Ahmad I, Owais M, Shahid M,. Springer.
21. R Development Core Team (2011) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL.
22. Rafael A, Bolstad BM, Collin F, Cope LM, Hobbs B, Speed TP, (2003) Summaries of affymetrix genechip probe level data. Nucleic Acids Research, 31, e15.
23. Ramsey JP, Reinert LK, Woodhams DC, Rollins-Smith LA, (2010) Immune defenses against Batrachochytrium dendrobatidis, a fungus linked to global amphibian declines, in the South African clawed frog, Xenopus laevis. Infection and Immunity, 78, 3981-3992.
24. Retallick RWR, Miera V, (2007) Strain differences in the amphibian chytrid Batrachochytrium dendrobatidis and non-permanent, sub-lethal effects of infection. Diseases of Aquatic Organisms, 75, 201-207.
25. Retallick RWR, McCallum H, Speare R, (2004) Endemic infection of the amphibian chytrid fungus in a frog community post-decline. PLoS Biology, 2, 5-1971.
26. Ribas L, Li MS, Doddington BJ, (2009) Expression profiling the temperature-dependent amphibian response to infection by Batrachochytrium dendrobatidis. PLoS ONE, 4, e8408.
27. Rivera A, Ro G, Van Epps HL, Simpson T, Leiner I, Sant'Angelo DB, Pamer EG, (2006) Innate immune activation and CD4+ T cell priming during respiratory fungal infection. Immunity, 25, 665-675.
28. Rosenblum EB, Poorten TJ, Settles M, Murdoch GK, Robert J, Maddox N, Eisen MB, (2009) Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus. PLoS ONE, 4, e6494.
29. Sims JE, Smith DE, (2010) The IL-1 family: regulators of immunity. Nature Reviews Immunology, 10, 89-102.
30. Skerratt LF, Berger L, Speare R, et al. (2007) Spread of chytridiomycosis has caused the rapid global decline and extinction of frogs. EcoHealth, 4, 125-134.
31. Smith FF, (2003) The molecular genetics of keratin disorders. American Journal of Clinical Dermatology, 4, 347-364.
32. Smith KF, Acevedo-Whitehouse K, Pedersen AB, (2009) The role of infectious diseases in biological conservation. Animal Conservation, 12, 1-12.
33. Smyth GK, (2005) Limma: Linear Models for Microarray Data. Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Springer, New York City, New York. pp. 397-420.
34. Soto-Azat C, Clarke BT, Poynton JC, Cunningham AA, (2010) Widespread historical presence of Batrachochytrium dendrobatidis in African pipid frogs. Diversity and Distributions, 16, 126-131.
35. Stice MJ, Briggs CJ, (2010) Immunization is ineffective at preventing infection and mortality due to the amphibian chytrid fungus Batrachochytrium dendrobatidis. Journal of Wildlife Diseases, 46, 70-77.
36. Voyles J, Young S, Berger L, et al. (2009) Pathogenesis of chytridiomycosis, a cause of catastrophic amphibian declines. Science, 326, 582-585.
37. Vredenburg VT, Fellers G, Davidson C, (2005) The mountain yellow-legged frog Rana muscosa (Camp 1917). In: Status and Conservation of US Amphibians (ed., Lanoo M,), pp. 563-566. University of California Press, Berkeley, California.
38. Vredenburg VT, Bingham R, Knapp R, Morgan JAT, Moritz C, Wake D, (2007) Concordant molecular and phenotypic data delineate new taxonomy and conservation priorities for the endangered mountain yellow-legged frog (Ranidae: Rana muscosa). Journal of Zoology, 271, 361-374.
39. Vredenburg VT, Knapp RA, Tunstall T, Briggs CJ, (2010) Large-scale amphibian die-offs driven by the dynamics of an emerging infectious disease. Proceedings of the National Academy of Sciences of the United States of America, 107, 9689-9694.
40. Wake DB, Vredenburg VT, (2008) Are we in the midst of the sixth mass extinction? A view from the world of amphibians. Proceedings of the National Academy of Sciences of the United States of America, 105, 11466-11473.