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Volumn 55, Issue 4, 2012, Pages 268-280

Identification of Glycine Max MicroRNAs in response to phosphorus deficiency

Author keywords

Deep sequencing; Glycine Max; miRNA; Phosphorus deficiency

Indexed keywords


EID: 84862698430     PISSN: 12269239     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12374-011-0255-4     Document Type: Article
Times cited : (27)

References (63)
  • 5
    • 48249129635 scopus 로고    scopus 로고
    • Membrane transporters for nitrogen, phosphate and potassium uptake in plants
    • Chen YF, Wang Y, Wu WH (2008) Membrane transporters for nitrogen, phosphate and potassium uptake in plants. J Integr Plant Biol 50: 835-848.
    • (2008) J Integr Plant Biol , vol.50 , pp. 835-848
    • Chen, Y.F.1    Wang, Y.2    Wu, W.H.3
  • 6
    • 57749199958 scopus 로고    scopus 로고
    • Differential expression of miRNAs in response to salt stress in maize roots
    • Ding D, Zhang L, Wang H, Liu Z, Zhang Z, Zheng Y (2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot 103: 29-38.
    • (2009) Ann Bot , vol.103 , pp. 29-38
    • Ding, D.1    Zhang, L.2    Wang, H.3    Liu, Z.4    Zhang, Z.5    Zheng, Y.6
  • 7
    • 6444236604 scopus 로고    scopus 로고
    • Organic acid exudation induced by phosphorus deficiency and/or aluminium toxicity in two contrasting soybean genotypes
    • Dong DF, Yan XL, Peng XX (2004) Organic acid exudation induced by phosphorus deficiency and/or aluminium toxicity in two contrasting soybean genotypes. Physiol Plantarum 122: 190-199.
    • (2004) Physiol Plantarum , vol.122 , pp. 190-199
    • Dong, D.F.1    Yan, X.L.2    Peng, X.X.3
  • 8
    • 27844526222 scopus 로고    scopus 로고
    • A miRNA involved in phosphate-starvation response in Arabidopsis
    • Fujii H, Chiou TJ, Lin SI, Aung K, Zhu JK (2005) A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol 15: 2038-2043.
    • (2005) Curr Biol , vol.15 , pp. 2038-2043
    • Fujii, H.1    Chiou, T.J.2    Lin, S.I.3    Aung, K.4    Zhu, J.K.5
  • 9
    • 77954877257 scopus 로고    scopus 로고
    • Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment
    • Ge Y, Li Y, Zhu YM, Bai X, Lv DK, Guo D, Ji W, Cai H (2010) Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment. BMC Plant Biol 10: 153.
    • (2010) BMC Plant Biol , vol.10 , pp. 153
    • Ge, Y.1    Li, Y.2    Zhu, Y.M.3    Bai, X.4    Lv, D.K.5    Guo, D.6    Ji, W.7    Cai, H.8
  • 10
    • 0347755643 scopus 로고    scopus 로고
    • The microRNA Registry
    • Griffiths-Jones S (2004) The microRNA Registry. Nucleic Acids Res 32(Database issue): D109-111.
    • (2004) Nucleic Acids Res , vol.32 , Issue.Databaseissue
    • Griffiths-Jones, S.1
  • 13
    • 74249114752 scopus 로고    scopus 로고
    • Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum
    • Gu M, Xu K, Chen A, Zhu Y, Tang G, Xu G (2010) Expression analysis suggests potential roles of microRNAs for phosphate and arbuscular mycorrhizal signaling in Solanum lycopersicum. Physiol Plant 138: 226-237.
    • (2010) Physiol Plant , vol.138 , pp. 226-237
    • Gu, M.1    Xu, K.2    Chen, A.3    Zhu, Y.4    Tang, G.5    Xu, G.6
  • 14
    • 49349083647 scopus 로고    scopus 로고
    • Identification of temporally and spatially phosphate-starvation responsive genes in Glycine max
    • Guo WB, Zhang LN, Zhao J, Liao H, Zhuang CX, Yan XL (2008) Identification of temporally and spatially phosphate-starvation responsive genes in Glycine max. Plant Sci 175: 574-584.
    • (2008) Plant Sci , vol.175 , pp. 574-584
    • Guo, W.B.1    Zhang, L.N.2    Zhao, J.3    Liao, H.4    Zhuang, C.X.5    Yan, X.L.6
  • 15
    • 55049138084 scopus 로고    scopus 로고
    • Interspecies regulation of microRNAs and their targets
    • Ha M, Pang MX, Agarwal V, Chen ZJ (2008) Interspecies regulation of microRNAs and their targets. Bba-Gene Regul Mech 1779: 735-742.
    • (2008) Bba-Gene Regul Mech , vol.1779 , pp. 735-742
    • Ha, M.1    Pang, M.X.2    Agarwal, V.3    Chen, Z.J.4
  • 18
    • 47849093133 scopus 로고    scopus 로고
    • Endogenous small RNAs and antibacterial immunity in plants
    • Jin H (2008) Endogenous small RNAs and antibacterial immunity in plants. FEBS Lett 582: 2679-2684.
    • (2008) FEBS Lett , vol.582 , pp. 2679-2684
    • Jin, H.1
  • 19
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • Jones-Rhoades MW, Bartel DP (2004) Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 14: 787-799.
    • (2004) Mol Cell , vol.14 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 21
    • 78651293534 scopus 로고    scopus 로고
    • miRBase: integrating microRNA annotation and deep-sequencing data
    • Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39(Database issue): D152-157.
    • (2011) Nucleic Acids Res , vol.39 , Issue.Databaseissue
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 24
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: short oligonucleotide alignment program
    • Li R, Li Y, Kristiansen K, Wang J (2008) SOAP: short oligonucleotide alignment program. Bioinformatics 24: 713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 25
    • 79954606171 scopus 로고    scopus 로고
    • Identification and analysis of seven HO-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
    • Li T, Li H, Zhang YX, Liu JY (2011) Identification and analysis of seven HO-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica). Nucleic Acids Res 39: 2821-2833.
    • (2011) Nucleic Acids Res , vol.39 , pp. 2821-2833
    • Li, T.1    Li, H.2    Zhang, Y.X.3    Liu, J.Y.4
  • 26
    • 79955802124 scopus 로고    scopus 로고
    • Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways
    • Li Y, Li C, Ding G, Jin Y (2011) Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways. BMC Evol Biol 11: 122.
    • (2011) BMC Evol Biol , vol.11 , pp. 122
    • Li, Y.1    Li, C.2    Ding, G.3    Jin, Y.4
  • 27
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25: 402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 28
    • 47249095055 scopus 로고    scopus 로고
    • Stress-responsive microRNAs in Populus
    • Lu S, Sun YH, Chiang VL (2008) Stress-responsive microRNAs in Populus. Plant J 55(1): 131-151.
    • (2008) Plant J , vol.55 , Issue.1 , pp. 131-151
    • Lu, S.1    Sun, Y.H.2    Chiang, V.L.3
  • 29
    • 77955724345 scopus 로고    scopus 로고
    • Global analysis of microRNA in Arabidopsis in response to phosphate starvation as studied by locked nucleic acid-based microarrays
    • Lundmark M, Korner CJ, Nielsen TH (2010) Global analysis of microRNA in Arabidopsis in response to phosphate starvation as studied by locked nucleic acid-based microarrays. Physiol Plant 140: 57-68.
    • (2010) Physiol Plant , vol.140 , pp. 57-68
    • Lundmark, M.1    Korner, C.J.2    Nielsen, T.H.3
  • 31
    • 77953193344 scopus 로고    scopus 로고
    • miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
    • Maizel A, Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD (2010) miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 22: 1104-1117.
    • (2010) Plant Cell , vol.22 , pp. 1104-1117
    • Maizel, A.1    Marin, E.2    Jouannet, V.3    Herz, A.4    Lokerse, A.S.5    Weijers, D.6    Vaucheret, H.7    Nussaume, L.8    Crespi, M.D.9
  • 32
    • 41849109875 scopus 로고    scopus 로고
    • MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis
    • Pant BD, Buhtz A, Kehr J, Scheible WR (2008) MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant Journal 53: 731-738.
    • (2008) Plant Journal , vol.53 , pp. 731-738
    • Pant, B.D.1    Buhtz, A.2    Kehr, J.3    Scheible, W.R.4
  • 33
    • 67650156804 scopus 로고    scopus 로고
    • Identification of nutrient-responsive Arabidopsis and rapeseed MicroRNAs by comprehensive realtime polymerase chain reaction profiling and small RNA sequencing
    • Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR (2009) Identification of nutrient-responsive Arabidopsis and rapeseed MicroRNAs by comprehensive realtime polymerase chain reaction profiling and small RNA sequencing. Plant Physiology 150: 1541-1555.
    • (2009) Plant Physiology , vol.150 , pp. 1541-1555
    • Pant, B.D.1    Musialak-Lange, M.2    Nuc, P.3    May, P.4    Buhtz, A.5    Kehr, J.6    Walther, D.7    Scheible, W.R.8
  • 34
    • 34447550259 scopus 로고    scopus 로고
    • The role of small RNAs in abiotic stress
    • Phillips JR, Dalmay T, Bartels D (2007) The role of small RNAs in abiotic stress. FEBS Lett 581: 3592-3597.
    • (2007) FEBS Lett , vol.581 , pp. 3592-3597
    • Phillips, J.R.1    Dalmay, T.2    Bartels, D.3
  • 35
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the european molecular biology open software suite
    • Rice P, Longden I, Bleasby A (2000) EMBOSS: the european molecular biology open software suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 36
    • 0000865258 scopus 로고    scopus 로고
    • Phosphorus uptake by plants: from soil to cell
    • Schachtman DP, Reid RJ, Ayling SM (1998) Phosphorus uptake by plants: from soil to cell. Plant Physiol 116: 447-453.
    • (1998) Plant Physiol , vol.116 , pp. 447-453
    • Schachtman, D.P.1    Reid, R.J.2    Ayling, S.M.3
  • 37
    • 34347262497 scopus 로고    scopus 로고
    • Nutrient sensing and signaling: NPKS
    • Schachtman DP, Shin R (2007) Nutrient sensing and signaling: NPKS. Annu Rev Plant Biol 58: 47-69.
    • (2007) Annu Rev Plant Biol , vol.58 , pp. 47-69
    • Schachtman, D.P.1    Shin, R.2
  • 40
    • 78650516088 scopus 로고    scopus 로고
    • Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses
    • Shen J, Xie K, Xiong L (2010) Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. Mol Genet Genomics 284: 477-488.
    • (2010) Mol Genet Genomics , vol.284 , pp. 477-488
    • Shen, J.1    Xie, K.2    Xiong, L.3
  • 41
    • 55049139974 scopus 로고    scopus 로고
    • The role of microRNAs and other endogenous small RNAs in plant stress responses
    • Shukla LI, Chinnusamy V, Sunkar R (2008) The role of microRNAs and other endogenous small RNAs in plant stress responses. Biochim Biophys Acta 1779: 743-748.
    • (2008) Biochim Biophys Acta , vol.1779 , pp. 743-748
    • Shukla, L.I.1    Chinnusamy, V.2    Sunkar, R.3
  • 43
    • 34347263491 scopus 로고    scopus 로고
    • Small RNAs as big players in plant abiotic stress responses and nutrient deprivation
    • Sunkar R, Chinnusamy V, Zhu JH, Zhu JK (2007) Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. Trends Plant Sci 12: 301-309.
    • (2007) Trends Plant Sci , vol.12 , pp. 301-309
    • Sunkar, R.1    Chinnusamy, V.2    Zhu, J.H.3    Zhu, J.K.4
  • 44
    • 43149096961 scopus 로고    scopus 로고
    • In silico identification of conserved microRNAs in large number of diverse plant species
    • Sunkar R, Jagadeeswaran G (2008) In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol 8: 37.
    • (2008) BMC Plant Biol , vol.8 , pp. 37
    • Sunkar, R.1    Jagadeeswaran, G.2
  • 46
    • 53549084847 scopus 로고    scopus 로고
    • Transcriptional regulation and signaling in phosphorus starvation: what about legumes?
    • Valdes-Lopez O, Hernandez G (2008) Transcriptional regulation and signaling in phosphorus starvation: what about legumes? J Integr Plant Biol 50: 1213-1222.
    • (2008) J Integr Plant Biol , vol.50 , pp. 1213-1222
    • Valdes-Lopez, O.1    Hernandez, G.2
  • 47
    • 77955159749 scopus 로고    scopus 로고
    • MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity
    • Valdes-Lopez O, Yang SS, Aparicio-Fabre R, Graham PH, Reyes JL, Vance CP, Hernandez G (2010) MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity. New Phytol 187: 805-818.
    • (2010) New Phytol , vol.187 , pp. 805-818
    • Valdes-Lopez, O.1    Yang, S.S.2    Aparicio-Fabre, R.3    Graham, P.H.4    Reyes, J.L.5    Vance, C.P.6    Hernandez, G.7
  • 49
    • 0037341752 scopus 로고    scopus 로고
    • Phosphorus acquisition and use: critical adaptations by plants for securing a nonrenewable resource
    • Vance CP, Uhde-Stone C, Allan DL (2003) Phosphorus acquisition and use: critical adaptations by plants for securing a nonrenewable resource. New Phytol 157: 423-447.
    • (2003) New Phytol , vol.157 , pp. 423-447
    • Vance, C.P.1    Uhde-Stone, C.2    Allan, D.L.3
  • 50
    • 68149136715 scopus 로고    scopus 로고
    • AGO1 homeostasis involves differential production of 21-nt and 22-nt miR168 species by MIR168a and MIR168b
    • Vaucheret H (2009) AGO1 homeostasis involves differential production of 21-nt and 22-nt miR168 species by MIR168a and MIR168b. PLoS One 4: e6442.
    • (2009) PLoS One , vol.4
    • Vaucheret, H.1
  • 51
    • 33646137364 scopus 로고    scopus 로고
    • The diversity of RNA silencing pathways in plants
    • Voinnet O, Brodersen P (2006) The diversity of RNA silencing pathways in plants. Trends in Genetics 22: 268-280.
    • (2006) Trends in Genetics , vol.22 , pp. 268-280
    • Voinnet, O.1    Brodersen, P.2
  • 52
    • 27744596243 scopus 로고    scopus 로고
    • Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis
    • Wang JW, Wang LJ, Mao YB, Cai WJ, Xue HW, Chen XY (2005) Control of root cap formation by MicroRNA-targeted auxin response factors in Arabidopsis. Plant Cell 17: 2204-2216.
    • (2005) Plant Cell , vol.17 , pp. 2204-2216
    • Wang, J.W.1    Wang, L.J.2    Mao, Y.B.3    Cai, W.J.4    Xue, H.W.5    Chen, X.Y.6
  • 53
    • 57849145093 scopus 로고    scopus 로고
    • Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
    • Wang Y, Li P, Cao X, Wang X, Zhang A, Li X (2009) Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules. Biochem Biophys Res Commun 378: 799-803.
    • (2009) Biochem Biophys Res Commun , vol.378 , pp. 799-803
    • Wang, Y.1    Li, P.2    Cao, X.3    Wang, X.4    Zhang, A.5    Li, X.6
  • 54
  • 55
    • 77950365831 scopus 로고    scopus 로고
    • Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development
    • Yoon EK, Yang JH, Lim J, Kim SH, Kim SK, Lee WS (2010) Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development. Nucleic Acids Res 38: 1382-1391.
    • (2010) Nucleic Acids Res , vol.38 , pp. 1382-1391
    • Yoon, E.K.1    Yang, J.H.2    Lim, J.3    Kim, S.H.4    Kim, S.K.5    Lee, W.S.6
  • 56
    • 48249112537 scopus 로고    scopus 로고
    • Signaling components involved in plant responses to phosphate starvation
    • Yuan H, Liu D (2008) Signaling components involved in plant responses to phosphate starvation. J Integr Plant Biol 50: 849-859.
    • (2008) J Integr Plant Biol , vol.50 , pp. 849-859
    • Yuan, H.1    Liu, D.2
  • 57
    • 77955662130 scopus 로고    scopus 로고
    • Analysis of phosphorus-deficient responsive miRNAs and cis-elements from soybean (Glycine max L.)
    • Zeng HQ, Zhu YY, Huang SQ, Yang ZM (2010) Analysis of phosphorus-deficient responsive miRNAs and cis-elements from soybean (Glycine max L.). J Plant Physiol 167: 1289-1297.
    • (2010) J Plant Physiol , vol.167 , pp. 1289-1297
    • Zeng, H.Q.1    Zhu, Y.Y.2    Huang, S.Q.3    Yang, Z.M.4
  • 58
    • 29144527030 scopus 로고    scopus 로고
    • Plant microRNA: a small regulatory molecule with big impact
    • Zhang B, Pan X, Cobb GP, Anderson TA (2006) Plant microRNA: a small regulatory molecule with big impact. Dev Biol 289: 3-16.
    • (2006) Dev Biol , vol.289 , pp. 3-16
    • Zhang, B.1    Pan, X.2    Cobb, G.P.3    Anderson, T.A.4
  • 59
    • 56649120500 scopus 로고    scopus 로고
    • Identification of soybean microRNAs and their targets
    • Zhang B, Pan X, Stellwag EJ (2008) Identification of soybean microRNAs and their targets. Planta 229: 161-182.
    • (2008) Planta , vol.229 , pp. 161-182
    • Zhang, B.1    Pan, X.2    Stellwag, E.J.3
  • 60
    • 65349110326 scopus 로고    scopus 로고
    • Members of miR169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor
    • Zhao B, Ge L, Liang R, Li W, Ruan K, Lin H, Jin Y (2009) Members of miR169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor. BMC Mol Biol 10: 29.
    • (2009) BMC Mol Biol , vol.10 , pp. 29
    • Zhao, B.1    Ge, L.2    Liang, R.3    Li, W.4    Ruan, K.5    Lin, H.6    Jin, Y.7
  • 61
    • 33745636695 scopus 로고    scopus 로고
    • Characterization of root architecture in an applied core collection for phosphorus efficiency of soybean germplasm
    • Zhao J, Fu JB, Liao H, He Y, Nian H, Hu YM, Qiu LJ, Dong YS, Yan XL (2004) Characterization of root architecture in an applied core collection for phosphorus efficiency of soybean germplasm. Chinese Sci Bull 49: 1611-1620.
    • (2004) Chinese Sci Bull , vol.49 , pp. 1611-1620
    • Zhao, J.1    Fu, J.B.2    Liao, H.3    He, Y.4    Nian, H.5    Hu, Y.M.6    Qiu, L.J.7    Dong, Y.S.8    Yan, X.L.9
  • 62
    • 80051554563 scopus 로고    scopus 로고
    • MiR398 and plant stress responses
    • Zhu C, Ding Y, Liu H (2011) MiR398 and plant stress responses. Physiol Plant 143: 1-9.
    • (2011) Physiol Plant , vol.143 , pp. 1-9
    • Zhu, C.1    Ding, Y.2    Liu, H.3
  • 63
    • 70449528642 scopus 로고    scopus 로고
    • microRNA expression profiles associated with phosphorus deficiency in white lupin (Lupinus albus L.)
    • Zhu YY, Zeng HQ, Dong CX, Yin XM, Shen QR, Yang ZM (2010) microRNA expression profiles associated with phosphorus deficiency in white lupin (Lupinus albus L.). Plant Sci 178: 23-29.
    • (2010) Plant Sci , vol.178 , pp. 23-29
    • Zhu, Y.Y.1    Zeng, H.Q.2    Dong, C.X.3    Yin, X.M.4    Shen, Q.R.5    Yang, Z.M.6


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