-
1
-
-
79957627493
-
A 2020 vision for vaccines against HIV, tuberculosis and malaria
-
Rappuoli R., Aderem A. A 2020 vision for vaccines against HIV, tuberculosis and malaria. Nature 2011, 473:463-469.
-
(2011)
Nature
, vol.473
, pp. 463-469
-
-
Rappuoli, R.1
Aderem, A.2
-
2
-
-
77954357410
-
Correlates of protection induced by vaccination
-
Plotkin S.A. Correlates of protection induced by vaccination. Clin Vaccine Immunol 2010, 17:1055-1065.
-
(2010)
Clin Vaccine Immunol
, vol.17
, pp. 1055-1065
-
-
Plotkin, S.A.1
-
4
-
-
79956079190
-
Immunological mechanisms of vaccination
-
Pulendran B., Ahmed R. Immunological mechanisms of vaccination. Nat Immunol 2011, 131:509-517.
-
(2011)
Nat Immunol
, vol.131
, pp. 509-517
-
-
Pulendran, B.1
Ahmed, R.2
-
5
-
-
57849085182
-
Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans
-
Querec T.D., Akondy R.S., Lee E.K., Cao W., Nakaya H.I., Teuwen D., Pirani A., Gernert K., Deng J., Marzolf B., et al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Nat Immunol 2009, 10:116-125.
-
(2009)
Nat Immunol
, vol.10
, pp. 116-125
-
-
Querec, T.D.1
Akondy, R.S.2
Lee, E.K.3
Cao, W.4
Nakaya, H.I.5
Teuwen, D.6
Pirani, A.7
Gernert, K.8
Deng, J.9
Marzolf, B.10
-
6
-
-
80051989398
-
Systems biology of vaccination for seasonal influenza in humans
-
Nakaya H.I., Wrammert J., Lee E.K., Racioppi L., Marie-Kunze S., Haining W.N., Means A.R., Kasturi S.P., Khan N., Li G-M., et al. Systems biology of vaccination for seasonal influenza in humans. Nat Immunol 2011, 12:786-795.
-
(2011)
Nat Immunol
, vol.12
, pp. 786-795
-
-
Nakaya, H.I.1
Wrammert, J.2
Lee, E.K.3
Racioppi, L.4
Marie-Kunze, S.5
Haining, W.N.6
Means, A.R.7
Kasturi, S.P.8
Khan, N.9
Li, G.-M.10
-
7
-
-
59649129816
-
Yellow fever vaccine induces integrated multilineage and polyfunctional immune responses
-
Gaucher D., Therrien R., Kettaf N., Angermann B., Boucher G., Filali-Mouhim A., Moser J., Mehta R., Drake D., Castro E., et al. Yellow fever vaccine induces integrated multilineage and polyfunctional immune responses. J Exp Med 2008, 10.1084/jem.20082292.
-
(2008)
J Exp Med
-
-
Gaucher, D.1
Therrien, R.2
Kettaf, N.3
Angermann, B.4
Boucher, G.5
Filali-Mouhim, A.6
Moser, J.7
Mehta, R.8
Drake, D.9
Castro, E.10
-
8
-
-
34548436508
-
Blood leukocyte microarrays to diagnose systemic onset juvenile idiopathic arthritis and follow the response to IL-1 blockade
-
Allantaz F., Chaussabel D., Stichweh D., Bennett L., Allman W., Mejias A., Ardura M., Chung W., Wise C., Palucka K., et al. Blood leukocyte microarrays to diagnose systemic onset juvenile idiopathic arthritis and follow the response to IL-1 blockade. J Exp Med 2007, 204:2131-2144.
-
(2007)
J Exp Med
, vol.204
, pp. 2131-2144
-
-
Allantaz, F.1
Chaussabel, D.2
Stichweh, D.3
Bennett, L.4
Allman, W.5
Mejias, A.6
Ardura, M.7
Chung, W.8
Wise, C.9
Palucka, K.10
-
9
-
-
33847408050
-
Gene expression patterns in blood leukocytes discriminate patients with acute infections
-
Ramilo O., Allman W., Chung W., Mejias A., Ardura M., Glaser C., Wittkowski K.M., Piqueras B., Banchereau J., Palucka A.K., et al. Gene expression patterns in blood leukocytes discriminate patients with acute infections. Blood 2007, 109:2066-2077.
-
(2007)
Blood
, vol.109
, pp. 2066-2077
-
-
Ramilo, O.1
Allman, W.2
Chung, W.3
Mejias, A.4
Ardura, M.5
Glaser, C.6
Wittkowski, K.M.7
Piqueras, B.8
Banchereau, J.9
Palucka, A.K.10
-
10
-
-
46749152178
-
A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus
-
Chaussabel D., Quinn C., Shen J., Patel P., Glaser C., Baldwin N., Stichweh D., Blankenship D., Li L., Munagala I., et al. A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus. Immunity 2008, 29:150-164.
-
(2008)
Immunity
, vol.29
, pp. 150-164
-
-
Chaussabel, D.1
Quinn, C.2
Shen, J.3
Patel, P.4
Glaser, C.5
Baldwin, N.6
Stichweh, D.7
Blankenship, D.8
Li, L.9
Munagala, I.10
-
11
-
-
77955894773
-
An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis
-
Berry M.P.R., Graham C.M., McNab F.W., Xu Z., Bloch S.A.A., Oni T., Wilkinson K.A., Banchereau R., Skinner J., Wilkinson R.J., et al. An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis. Nature 2010, 466:973-977.
-
(2010)
Nature
, vol.466
, pp. 973-977
-
-
Berry, M.P.R.1
Graham, C.M.2
McNab, F.W.3
Xu, Z.4
Bloch, S.A.A.5
Oni, T.6
Wilkinson, K.A.7
Banchereau, R.8
Skinner, J.9
Wilkinson, R.J.10
-
12
-
-
78650735473
-
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
-
Shi L., Campbell G., Jones W.D., Campagne F., Wen Z., Walker S.J., Su Z., Chu T.-M., Goodsaid F.M., Pusztai L., et al. The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models. Nat Biotechnol 2010, 28:827-838.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 827-838
-
-
Shi, L.1
Campbell, G.2
Jones, W.D.3
Campagne, F.4
Wen, Z.5
Walker, S.J.6
Su, Z.7
Chu, T.-M.8
Goodsaid, F.M.9
Pusztai, L.10
-
13
-
-
0042822243
-
Using DNA microarrays for diagnostic and prognostic prediction
-
Simon R. Using DNA microarrays for diagnostic and prognostic prediction. Expert Rev Mol Diagn 2003, 3:587-595.
-
(2003)
Expert Rev Mol Diagn
, vol.3
, pp. 587-595
-
-
Simon, R.1
-
14
-
-
33846978784
-
Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
-
Dupuy A., Simon R. Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 2007, 99:147-157.
-
(2007)
J Natl Cancer Inst
, vol.99
, pp. 147-157
-
-
Dupuy, A.1
Simon, R.2
-
15
-
-
19344363035
-
Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds
-
Chang H.Y., Sneddon J.B., Alizadeh A.A., Sood R., West R.B., Montgomery K., Chi J.-T., van de Rijn M., Botstein D., Brown P.O. Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds. PLoS Biol 2004, 2:E7.
-
(2004)
PLoS Biol
, vol.2
-
-
Chang, H.Y.1
Sneddon, J.B.2
Alizadeh, A.A.3
Sood, R.4
West, R.B.5
Montgomery, K.6
Chi, J.-T.7
van de Rijn, M.8
Botstein, D.9
Brown, P.O.10
-
16
-
-
33644551073
-
Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers
-
Chi J.-T., Wang Z., Nuyten D.S.A., Rodriguez E.H., Schaner M.E., Salim A., Wang Y., Kristensen G.B., Helland A., Børresen-Dale A-L., et al. Gene expression programs in response to hypoxia: cell type specificity and prognostic significance in human cancers. PLoS Med 2006, 3:e47.
-
(2006)
PLoS Med
, vol.3
-
-
Chi, J.-T.1
Wang, Z.2
Nuyten, D.S.A.3
Rodriguez, E.H.4
Schaner, M.E.5
Salim, A.6
Wang, Y.7
Kristensen, G.B.8
Helland, A.9
Børresen-Dale, A.-L.10
-
17
-
-
33846425793
-
The prognostic role of a gene signature from tumorigenic breast-cancer cells
-
Liu R., Wang X., Chen G.Y., Dalerba P., Gurney A., Hoey T., Sherlock G., Lewicki J., Shedden K., Clarke M.F. The prognostic role of a gene signature from tumorigenic breast-cancer cells. N Engl J Med 2007, 356:217-226.
-
(2007)
N Engl J Med
, vol.356
, pp. 217-226
-
-
Liu, R.1
Wang, X.2
Chen, G.Y.3
Dalerba, P.4
Gurney, A.5
Hoey, T.6
Sherlock, G.7
Lewicki, J.8
Shedden, K.9
Clarke, M.F.10
-
18
-
-
33846459466
-
Sorting out breast-cancer gene signatures
-
Massague J. Sorting out breast-cancer gene signatures. N Engl J Med 2007, 356:294-297.
-
(2007)
N Engl J Med
, vol.356
, pp. 294-297
-
-
Massague, J.1
-
19
-
-
58249103214
-
Cell cycle correlated genes dictate the prognostic power of breast cancer gene lists
-
Mosley J.D., Keri R.A. Cell cycle correlated genes dictate the prognostic power of breast cancer gene lists. BMC Med Genomics 2008, 1:11.
-
(2008)
BMC Med Genomics
, vol.1
, pp. 11
-
-
Mosley, J.D.1
Keri, R.A.2
-
20
-
-
76949094687
-
Integrating genomic signatures for immunologic discovery
-
Haining W.N., Wherry E.J. Integrating genomic signatures for immunologic discovery. Immunity 2010, 32:152-161.
-
(2010)
Immunity
, vol.32
, pp. 152-161
-
-
Haining, W.N.1
Wherry, E.J.2
-
21
-
-
27344435774
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A., Tamayo P., Mootha V., Mukherjee S., Ebert B.L., Gillette M., Paulovich A., Pomeroy S., Golub T.R., Lander E., et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 2005, 102:15545-15550.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.6
Paulovich, A.7
Pomeroy, S.8
Golub, T.R.9
Lander, E.10
-
23
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
Ashburner M., Ball C., Blake J., Botstein D., Butler H., Cherry J., Davis A., Dolinski K., Dwight S., Eppig J., et al. Gene Ontology: tool for the unification of biology. Nat Genet 2000, 25:25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.2
Blake, J.3
Botstein, D.4
Butler, H.5
Cherry, J.6
Davis, A.7
Dolinski, K.8
Dwight, S.9
Eppig, J.10
-
24
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Ogata H., Goto S., Sato K., Fujibuchi W., Bono H., Kanehisa M. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 1999, 27:29-34.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
25
-
-
79958135926
-
Molecular Signatures Database (MSigDB) 3.0
-
Liberzon A., Subramanian A., Pinchback R., Thorvaldsdóttir H., Tamayo P., Mesirov J.P. Molecular Signatures Database (MSigDB) 3.0. Bioinformatics 2011, 10.1093/bioinformatics/btr260.
-
(2011)
Bioinformatics
-
-
Liberzon, A.1
Subramanian, A.2
Pinchback, R.3
Thorvaldsdóttir, H.4
Tamayo, P.5
Mesirov, J.P.6
-
26
-
-
79953146403
-
Predicting relapse in patients with medulloblastoma by integrating evidence from clinical and genomic features
-
Tamayo P., Cho Y.-J., Tsherniak A., Greulich H., Ambrogio L., Schouten-van Meeteren N., Zhou T., Buxton A., Kool M., Meyerson M., et al. Predicting relapse in patients with medulloblastoma by integrating evidence from clinical and genomic features. J Clin Oncol 2011, 29:1415-1423.
-
(2011)
J Clin Oncol
, vol.29
, pp. 1415-1423
-
-
Tamayo, P.1
Cho, Y.-J.2
Tsherniak, A.3
Greulich, H.4
Ambrogio, L.5
Schouten-van Meeteren, N.6
Zhou, T.7
Buxton, A.8
Kool, M.9
Meyerson, M.10
-
27
-
-
57149092133
-
Inferring pathway activity toward precise disease classification
-
Lee E., Chuang H.-Y., Kim J.-W., Ideker T., Lee D. Inferring pathway activity toward precise disease classification. PLoS Comput Biol 2008, 4:e1000217.
-
(2008)
PLoS Comput Biol
, vol.4
-
-
Lee, E.1
Chuang, H.-Y.2
Kim, J.-W.3
Ideker, T.4
Lee, D.5
-
28
-
-
77951634577
-
Cell type-specific gene expression differences in complex tissues
-
Shen-Orr S.S., Tibshirani R., Khatri P., Bodian D.L., Staedtler F., Perry N.M., Hastie T., Sarwal M.M., Davis M.M., Butte A.J. Cell type-specific gene expression differences in complex tissues. Nat Methods 2010, 7:287-289.
-
(2010)
Nat Methods
, vol.7
, pp. 287-289
-
-
Shen-Orr, S.S.1
Tibshirani, R.2
Khatri, P.3
Bodian, D.L.4
Staedtler, F.5
Perry, N.M.6
Hastie, T.7
Sarwal, M.M.8
Davis, M.M.9
Butte, A.J.10
-
29
-
-
79959480919
-
Towards systematic functional characterization of cancer genomes
-
Boehm J.S., Hahn W.C. Towards systematic functional characterization of cancer genomes. Nat Rev Genet 2011, 12:487-498.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 487-498
-
-
Boehm, J.S.1
Hahn, W.C.2
-
30
-
-
79960987021
-
A public genome-scale lentiviral expression library of human ORFs
-
Yang X., Boehm J.S., Yang X., Salehi-Ashtiani K., Hao T., Shen Y., Lubonja R., Thomas S.R., Alkan O., Bhimdi T., et al. A public genome-scale lentiviral expression library of human ORFs. Nat Methods 2011, 10.1038/nmeth.1638.
-
(2011)
Nat Methods
-
-
Yang, X.1
Boehm, J.S.2
Yang, X.3
Salehi-Ashtiani, K.4
Hao, T.5
Shen, Y.6
Lubonja, R.7
Thomas, S.R.8
Alkan, O.9
Bhimdi, T.10
-
31
-
-
70349882120
-
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses
-
Amit I., Garber M., Chevrier N., Leite A.P., Donner Y., Eisenhaure T., Guttman M., Grenier J.K., Li W., Zuk O., et al. Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses. Science 2009, 326:257-263.
-
(2009)
Science
, vol.326
, pp. 257-263
-
-
Amit, I.1
Garber, M.2
Chevrier, N.3
Leite, A.P.4
Donner, Y.5
Eisenhaure, T.6
Guttman, M.7
Grenier, J.K.8
Li, W.9
Zuk, O.10
-
32
-
-
81055129618
-
Systematic discovery of TLR signaling components delineates viral-sensing circuits
-
Chevrier N., Mertins P., Artyomov M.N., Shalek A.K., Iannacone M., Ciaccio M.F., Gat-Viks I., Tonti E., DeGrace M.M., Clauser K.R., et al. Systematic discovery of TLR signaling components delineates viral-sensing circuits. Cell 2011, 147:853-867.
-
(2011)
Cell
, vol.147
, pp. 853-867
-
-
Chevrier, N.1
Mertins, P.2
Artyomov, M.N.3
Shalek, A.K.4
Iannacone, M.5
Ciaccio, M.F.6
Gat-Viks, I.7
Tonti, E.8
DeGrace, M.M.9
Clauser, K.R.10
-
33
-
-
82255175259
-
Strategies to discover regulatory circuits of the mammalian immune system
-
Amit I., Regev A., Hacohen N. Strategies to discover regulatory circuits of the mammalian immune system. Nat Rev Immunol 2011, 11:873-880.
-
(2011)
Nat Rev Immunol
, vol.11
, pp. 873-880
-
-
Amit, I.1
Regev, A.2
Hacohen, N.3
|