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Volumn 3, Issue 3, 2012, Pages 106-109

A conserved role for intragenic DNA methylation in alternative pre-mRNA splicing

Author keywords

Alternative pre mRNA splicing; DNA methylation; RNA polymerase II

Indexed keywords

CD45 ANTIGEN; DNA METHYLTRANSFERASE; MESSENGER RNA; RNA POLYMERASE II; TRANSCRIPTION FACTOR CTCF;

EID: 84862650101     PISSN: 21541264     EISSN: 21541272     Source Type: Journal    
DOI: 10.4161/trns.19816     Document Type: Article
Times cited : (36)

References (30)
  • 1
    • 70349333201 scopus 로고    scopus 로고
    • Nucleosomes are well positioned in exons and carry characteristic histone modifications
    • PMID:19687145
    • Andersson R, Enroth S, Rada-Iglesias A, Wadelius C, Komorowski J. Nucleosomes are well positioned in exons and carry characteristic histone modifications. Genome Res 2009; 19:1732-1741; PMID:19687145; http://dx.doi.org/10.1101/gr.092353.109.
    • (2009) Genome Res , vol.19 , pp. 1732-1741
    • Andersson, R.1    Enroth, S.2    Rada-Iglesias, A.3    Wadelius, C.4    Komorowski, J.5
  • 2
    • 61349098460 scopus 로고    scopus 로고
    • Differential chromatin marking of introns and expressed exons by H3K36me3
    • PMID:19182803
    • Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J. Differential chromatin marking of introns and expressed exons by H3K36me3. Nat Genet 2009; 41:376-381; PMID:19182803; http://dx.doi.org/10.1038/ng.322.
    • (2009) Nat Genet , vol.41 , pp. 376-381
    • Kolasinska-Zwierz, P.1    Down, T.2    Latorre, I.3    Liu, T.4    Liu, X.S.5    Ahringer, J.6
  • 3
    • 70350013550 scopus 로고    scopus 로고
    • Biased chromatin signatures around polyadenylation sites and exons
    • PMID:19854133
    • Spies N, Nielsen CB, Padgett RA, Burge CB. Biased chromatin signatures around polyadenylation sites and exons. Mol Cell 2009; 36:245-254; PMID:19854133; http://dx.doi.org/10.1016/j.molcel.2009.10.008.
    • (2009) Mol Cell , vol.36 , pp. 245-254
    • Spies, N.1    Nielsen, C.B.2    Padgett, R.A.3    Burge, C.B.4
  • 5
    • 69949132191 scopus 로고    scopus 로고
    • Chromatin organization marks exon-intron structure
    • PMID:19684600
    • Schwartz S, Meshorer E, Ast G. Chromatin organization marks exon-intron structure. Nat Struct Mol Biol 2009; 16:990-995; PMID:19684600; http://dx.doi.org/10.1038/nsmb.1659.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 990-995
    • Schwartz, S.1    Meshorer, E.2    Ast, G.3
  • 6
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • PMID:19829295
    • Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 2009; 462:315-322; PMID:19829295; http://dx.doi.org/10.1038/nature08514.
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5    Tonti-Filippini, J.6
  • 7
    • 49649125042 scopus 로고    scopus 로고
    • Genome-scale DNA methylation maps of pluripotent and differentiated cells
    • PMID:18600261
    • Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 2008; 454:766-770; PMID:18600261.
    • (2008) Nature , vol.454 , pp. 766-770
    • Meissner, A.1    Mikkelsen, T.S.2    Gu, H.3    Wernig, M.4    Hanna, J.5    Sivachenko, A.6
  • 8
    • 69749092741 scopus 로고    scopus 로고
    • High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
    • PMID:19581485
    • Hodges E, Smith AD, Kendall J, Xuan Z, Ravi K, Rooks M, et al. High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing. Genome Res 2009; 19:1593-1605; PMID:19581485; http://dx.doi.org/10.1101/gr.095190.109.
    • (2009) Genome Res , vol.19 , pp. 1593-1605
    • Hodges, E.1    Smith, A.D.2    Kendall, J.3    Xuan, Z.4    Ravi, K.5    Rooks, M.6
  • 9
    • 42449089029 scopus 로고    scopus 로고
    • Coupling transcription and alternative splicing
    • PMID:18380347
    • Kornblihtt AR. Coupling transcription and alternative splicing. Adv Exp Med Biol 2007; 623:175-189; PMID:18380347; http://dx.doi.org/10.1007/978-0-387-77374-2_11.
    • (2007) Adv Exp Med Biol , vol.623 , pp. 175-189
    • Kornblihtt, A.R.1
  • 11
    • 77149175671 scopus 로고    scopus 로고
    • Regulation of alternative splicing by histone modifications
    • PMID:20133523
    • Luco RF, Pan Q, Tominaga K, Blencowe BJ, Pereira-Smith OM, Misteli T. Regulation of alternative splicing by histone modifications. Science 2010; 327:996-1000; PMID:20133523; http://dx.doi.org/10.1126/science.1184208.
    • (2010) Science , vol.327 , pp. 996-1000
    • Luco, R.F.1    Pan, Q.2    Tominaga, K.3    Blencowe, B.J.4    Pereira-Smith, O.M.5    Misteli, T.6
  • 12
    • 78650961149 scopus 로고    scopus 로고
    • Epigenetics in alternative pre-mRNA splicing
    • PMID:21215366
    • Luco RF, Allo M, Schor IE, Kornblihtt AR, Misteli T. Epigenetics in alternative pre-mRNA splicing. Cell 2011; 144:16-26; PMID:21215366; http://dx.doi.org/10.1016/j.cell.2010.11.056.
    • (2011) Cell , vol.144 , pp. 16-26
    • Luco, R.F.1    Allo, M.2    Schor, I.E.3    Kornblihtt, A.R.4    Misteli, T.5
  • 13
    • 77952734605 scopus 로고    scopus 로고
    • Conservation and divergence of methylation patterning in plants and animals
    • PMID:20395551
    • Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, et al. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA 2010; 107:8689-8694; PMID:20395551; http://dx.doi.org/10.1073/pnas.1002720107.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 8689-8694
    • Feng, S.1    Cokus, S.J.2    Zhang, X.3    Chen, P.Y.4    Bostick, M.5    Goll, M.G.6
  • 14
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • PMID:20395474
    • Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010; 328:916-919; PMID:20395474; http://dx.doi.org/10.1126/science.1186366.
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 15
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • PMID:12042769
    • Jones PA, Baylin SB. The fundamental role of epigenetic events in cancer. Nat Rev Genet 2002; 3:415-428; PMID:12042769.
    • (2002) Nat Rev Genet , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 16
    • 78649955848 scopus 로고    scopus 로고
    • The honey bee epigenomes: Differential methylation of brain DNA in queens and workers
    • PMID:21072239
    • Lyko F, Foret S, Kucharski R, Wolf S, Falckenhayn C, Maleszka R. The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol 2010; 8:1000506; PMID:21072239; http://dx.doi.org/10.1371/journal.pbio.1000506.
    • (2010) PLoS Biol , vol.8 , pp. 1000506
    • Lyko, F.1    Foret, S.2    Kucharski, R.3    Wolf, S.4    Falckenhayn, C.5    Maleszka, R.6
  • 17
    • 77649267695 scopus 로고    scopus 로고
    • Dynamic changes in the human methylome during differentiation
    • PMID:20133333
    • Laurent L, Wong E, Li G, Huynh T, Tsirigos A, Ong CT, et al. Dynamic changes in the human methylome during differentiation. Genome Res 2010; 20:320-331; PMID:20133333; http://dx.doi.org/10.1101/gr.101907.109.
    • (2010) Genome Res , vol.20 , pp. 320-331
    • Laurent, L.1    Wong, E.2    Li, G.3    Huynh, T.4    Tsirigos, A.5    Ong, C.T.6
  • 18
    • 77954171220 scopus 로고    scopus 로고
    • Contrasting chromatin organization of CpG islands and exons in the human genome
    • PMID:20602769
    • Choi JK. Contrasting chromatin organization of CpG islands and exons in the human genome. Genome Biol 2010; 11:70; PMID:20602769; http://dx.doi.org/10.1186/gb-2010-11-7-r70.
    • (2010) Genome Biol , vol.11 , pp. 70
    • Choi, J.K.1
  • 19
    • 77954659099 scopus 로고    scopus 로고
    • Relationship between nucleosome positioning and DNA methylation
    • PMID:20512117
    • Chodavarapu RK, Feng S, Bernatavichute YV, Chen PY, Stroud H, Yu Y, et al. Relationship between nucleosome positioning and DNA methylation. Nature 2010; 466:388-392; PMID:20512117; http://dx.doi.org/10.1038/nature09147.
    • (2010) Nature , vol.466 , pp. 388-392
    • Chodavarapu, R.K.1    Feng, S.2    Bernatavichute, Y.V.3    Chen, P.Y.4    Stroud, H.5    Yu, Y.6
  • 20
    • 70349322609 scopus 로고    scopus 로고
    • Selective anchoring of DNA methyltransferases 3A and 3B to nucleosomes containing methylated DNA
    • PMID:19620278
    • Jeong S, Liang G, Sharma S, Lin JC, Choi SH, Han H, et al. Selective anchoring of DNA methyltransferases 3A and 3B to nucleosomes containing methylated DNA. Mol Cell Biol 2009; 29:5366-5376; PMID:19620278; http://dx.doi.org/10.1128/MCB.00484-09.
    • (2009) Mol Cell Biol , vol.29 , pp. 5366-5376
    • Jeong, S.1    Liang, G.2    Sharma, S.3    Lin, J.C.4    Choi, S.H.5    Han, H.6
  • 21
    • 41349085806 scopus 로고    scopus 로고
    • Nutritional control of reproductive status in honeybees via DNA methylation
    • PMID:18339900
    • Kucharski R, Maleszka J, Foret S, Maleszka R. Nutritional control of reproductive status in honeybees via DNA methylation. Science 2008; 319:1827-1830; PMID:18339900; http://dx.doi.org/10.1126/science.1153069.
    • (2008) Science , vol.319 , pp. 1827-1830
    • Kucharski, R.1    Maleszka, J.2    Foret, S.3    Maleszka, R.4
  • 22
    • 80455176999 scopus 로고    scopus 로고
    • CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
    • PMID:21964334
    • Shukla S, Kavak E, Gregory M, Imashimizu M, Shutinoski B, Kashlev M, et al. CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. Nature 2011; 479:74-79; PMID:21964334; http://dx.doi.org/10.1038/nature10442.
    • (2011) Nature , vol.479 , pp. 74-79
    • Shukla, S.1    Kavak, E.2    Gregory, M.3    Imashimizu, M.4    Shutinoski, B.5    Kashlev, M.6
  • 23
    • 0038815306 scopus 로고    scopus 로고
    • CD45: A critical regulator of signaling thresholds in immune cells
    • PMID:12414720
    • Hermiston ML, Xu Z, Weiss A. CD45: a critical regulator of signaling thresholds in immune cells. Annu Rev Immunol 2003; 21:107-137; PMID:12414720; http://dx.doi.org/10.1146/annurev.immunol.21.120601.140946.
    • (2003) Annu Rev Immunol , vol.21 , pp. 107-137
    • Hermiston, M.L.1    Xu, Z.2    Weiss, A.3
  • 24
    • 48749100692 scopus 로고    scopus 로고
    • Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL
    • PMID:18669861
    • Oberdoerffer S, Moita LF, Neems D, Freitas RP, Hacohen N, Rao A. Regulation of CD45 alternative splicing by heterogeneous ribonucleoprotein, hnRNPLL. Science 2008; 321:686-691; PMID:18669861; http://dx.doi.org/10.1126/science.1157610.
    • (2008) Science , vol.321 , pp. 686-691
    • Oberdoerffer, S.1    Moita, L.F.2    Neems, D.3    Freitas, R.P.4    Hacohen, N.5    Rao, A.6
  • 25
    • 70849129503 scopus 로고    scopus 로고
    • A wave of nascent transcription on activated human genes
    • PMID:19826084
    • Wada Y, Ohta Y, Xu M, Tsutsumi S, Minami T, Inoue K, et al. A wave of nascent transcription on activated human genes. Proc Natl Acad Sci USA 2009; 106:18357-18361; PMID:19826084; http://dx.doi.org/10.1073/pnas.0902573106.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 18357-18361
    • Wada, Y.1    Ohta, Y.2    Xu, M.3    Tsutsumi, S.4    Minami, T.5    Inoue, K.6
  • 26
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: Master weaver of the genome
    • PMID:19563753
    • Phillips JE, Corces VG. CTCF: master weaver of the genome. Cell 2009; 137:1194-1211; PMID:19563753; http://dx.doi.org/10.1016/j.cell.2009.06.001.
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 27
    • 74749089043 scopus 로고    scopus 로고
    • Contextdependent regulatory mechanism of the splicing factor hnRNP L
    • PMID:20122404
    • Motta-Mena LB, Heyd F, Lynch KW. Contextdependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell 2010; 37:223-234; PMID:20122404; http://dx.doi.org/10.1016/j.molcel.2009.12.027.
    • (2010) Mol Cell , vol.37 , pp. 223-234
    • Motta-Mena, L.B.1    Heyd, F.2    Lynch, K.W.3
  • 28
    • 79956308473 scopus 로고    scopus 로고
    • Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
    • PMID:21552279
    • Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, et al. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature 2011; 473:394-397; PMID:21552279; http://dx.doi.org/10.1038/nature10102.
    • (2011) Nature , vol.473 , pp. 394-397
    • Pastor, W.A.1    Pape, U.J.2    Huang, Y.3    Henderson, H.R.4    Lister, R.5    Ko, M.6
  • 29
    • 79956323623 scopus 로고    scopus 로고
    • Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
    • PMID:21460836
    • Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, et al. Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 2011; 473:398-402; PMID:21460836; http://dx.doi.org/10.1038/nature10008.
    • (2011) Nature , vol.473 , pp. 398-402
    • Ficz, G.1    Branco, M.R.2    Seisenberger, S.3    Santos, F.4    Krueger, F.5    Hore, T.A.6
  • 30
    • 84555189745 scopus 로고    scopus 로고
    • DNA methylation: TET proteins-guardians of CpG islands?
    • PMID:22157888
    • Williams K, Christensen J, Helin K. DNA methylation: TET proteins-guardians of CpG islands? EMBO Rep 2011; 13:28-35; PMID:22157888; http://dx.doi.org/10.1038/embor.2011.233.
    • (2011) EMBO Rep , vol.13 , pp. 28-35
    • Williams, K.1    Christensen, J.2    Helin, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.