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Volumn 6, Issue 7, 2012, Pages 1277-1280

Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

EID: 84862613173     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.187     Document Type: Note
Times cited : (22)

References (10)
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  • 2
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  • 3
    • 80054745897 scopus 로고    scopus 로고
    • Tax collector: Modifying current 16S rRNA databases for the rapid classification at six taxonomic levels
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    • (2010) Diversity , vol.2 , pp. 1015-1025
    • Giongo, A.1    Richardson, A.G.D.2    Crabb, D.B.3    Triplett, E.W.4
  • 4
    • 42449109109 scopus 로고    scopus 로고
    • PARTS: Probabilistic alignment for RNA joinT secondary structure prediction
    • DOI 10.1093/nar/gkn043
    • Harmanci AO, Sharma G, Mathews DH. (2008). PARTS: Probabilistic Alignment for RNA joinT Secondary structure prediction. Nucleic Acids Res 36: 2406-2417. (Pubitemid 351567012)
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    • Harmanci, A.O.1    Sharma, G.2    Mathews, D.H.3
  • 5
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    • (2010) Environ Microbiol. , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 6
    • 65549111754 scopus 로고    scopus 로고
    • Infernal 1.0: Inference of RNA alignments
    • Nawrocki EP, Kolbe DL, Eddy SR. (2009). Infernal 1.0: Inference of RNA alignments. Bioinformatics 25: 1335-1337.
    • (2009) Bioinformatics , vol.25 , pp. 1335-1337
    • Nawrocki, E.P.1    Kolbe, D.L.2    Eddy, S.R.3
  • 7
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    • Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis
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  • 8
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    • Cluster ensembles - A knowledge reuse framework for combining multiple partitions
    • Strehl A, Ghosh J. (2002). Cluster ensembles - A knowledge reuse framework for combining multiple partitions. J Mach Learn Res 3: 583-617.
    • (2002) J. Mach. Learn Res. , vol.3 , pp. 583-617
    • Strehl, A.1    Ghosh, J.2
  • 9
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    • A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
    • 27 April 2011; doi: 10.1093/bib/ bbr009
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.