메뉴 건너뛰기




Volumn 44, Issue 2, 2012, Pages 198-206

Evolutionary analysis of human-origin influenza A virus (H3N2) genes associated with the codon usage patterns since 1993

Author keywords

Codon usage pattern; Computational genomics; Evolution; H3N2 subtype; Influenza A virus

Indexed keywords

ANTIGENICITY; ARTICLE; CODON USAGE; DNA BASE COMPOSITION; GENE SEQUENCE; GENETIC VARIABILITY; HA GENE; INFLUENZA A (H3N2); MOLECULAR EVOLUTION; MP GENE; NA GENE; NONHUMAN; NP GENE; NS GENE; NUCLEIC ACID BASE SUBSTITUTION; PA GENE; PB1 GENE; PB2 GENE; PRIORITY JOURNAL; VIRUS GENE; BIOLOGY; CODON; GENETICS; HUMAN; INFLUENZA; INFLUENZA VIRUS A H3N2; ISOLATION AND PURIFICATION; METHODOLOGY; VIROLOGY;

EID: 84862609275     PISSN: 09208569     EISSN: 1572994X     Source Type: Journal    
DOI: 10.1007/s11262-011-0687-4     Document Type: Article
Times cited : (15)

References (23)
  • 2
    • 0024439330 scopus 로고
    • Avian-to-human transmission of the PB1 gene of influenza A viruses in the 1957 and 1968 pandemics
    • Y. Kawaoka, S. Krauss, R.G. Webster, Avian-to-human transmission of the PB1 gene of influenza A viruses in the 1957 and 1968 pandemics. J. Virol. 63, 4603-4608 (1989) (Pubitemid 19257834)
    • (1989) Journal of Virology , vol.63 , Issue.11 , pp. 4603-4608
    • Kawaoka, Y.1    Krauss, S.2    Webster, R.G.3
  • 7
    • 77949773035 scopus 로고    scopus 로고
    • Comparison of the pathology caused by H1N1, H5N1, and H3N2 influenza viruses
    • J. Guarner, R. Falcon-Escobedo, Comparison of the pathology caused by H1N1, H5N1, and H3N2 influenza viruses. Arch. Med. Res. 40, 655-661 (2009)
    • (2009) Arch. Med. Res. , vol.40 , pp. 655-661
    • Guarner, J.1    Falcon-Escobedo, R.2
  • 8
    • 0034815075 scopus 로고    scopus 로고
    • Cocirculation of avian H9N2 and contemporary "human" H3N2 influenza A viruses in pigs in southeastern China: Potential for genetic reassortment?
    • DOI 10.1128/JVI.75.20.9679-9686.2001
    • J.S. Peiris, Y. Guan, D. Markwell, P. Ghose, R.G. Webster, K.F. Shortridge, Cocirculation of avian H9N2 and contemporary "human" H3N2 influenza A viruses in pigs in southeastern china: potential for genetic reassortment? J. Virol. 75, 9679-9686 (2001) (Pubitemid 32900102)
    • (2001) Journal of Virology , vol.75 , Issue.20 , pp. 9679-9686
    • Peiris, J.S.M.1    Guan, Y.2    Markwell, D.3    Ghose, P.4    Webster, R.G.5    Shortridge, K.F.6
  • 9
    • 35648971220 scopus 로고    scopus 로고
    • Comparative study of the hemagglutinin and neuraminidase genes of influenza A virus H3N2, H9N2, and H5N1 subtypes using bioinformatics techniques
    • DOI 10.1139/W07-044
    • I. Ahn, H.S. Son, Comparative study of the hemagglutinin and neuraminidase genes of influenza A virus H3N2, H9N2, and H5N1 subtypes using bioinformatics techniques. Can. J. Microbiol. 53, 830-839 (2007) (Pubitemid 350032521)
    • (2007) Canadian Journal of Microbiology , vol.53 , Issue.7 , pp. 830-839
    • Ahn, I.1    Son, H.S.2
  • 10
    • 0031664798 scopus 로고    scopus 로고
    • Phylogenetic analysis of the entire genome of influenza A (H3N2) viruses from Japan: Evidence for genetic reassortment of the six internal genes
    • S.E. Lindstrom, Y. Hiromoto, R. Nerome, K. Omoe, S. Sugita, Y. Yamazaki, T. Takahashi, K. Nerome, Phylogenetic analysis of the entire genome of influenza A (H3N2) viruses from japan: evidence for genetic reassortment of the six internal genes. J. Virol. 72, 8021-8031 (1998) (Pubitemid 28421795)
    • (1998) Journal of Virology , vol.72 , Issue.10 , pp. 8021-8031
    • Lindstrom, S.E.1    Hiromoto, Y.2    Nerome, R.3    Omoe, K.4    Sugita, S.5    Yamazaki, Y.6    Takahashi, T.7    Nerome, K.8
  • 11
    • 44849127354 scopus 로고    scopus 로고
    • Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation
    • L. Zaslavsky, Y. Bao, T.A. Tatusova, Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation. BMC Bioinform. 9, 237 (2008)
    • (2008) BMC Bioinform. , vol.9 , pp. 237
    • Zaslavsky, L.1    Bao, Y.2    Tatusova, T.A.3
  • 13
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Epub ahead of print
    • Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, S. Kumar, MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. Epub ahead of print (2011)
    • (2011) Mol. Biol. Evol.
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 14
    • 0023046211 scopus 로고
    • Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons
    • P.M. Sharp, W.H. Li, Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons. Nucleic Acids Res. 14, 7737-7749 (1986)
    • (1986) Nucleic Acids Res. , vol.14 , pp. 7737-7749
    • Sharp, P.M.1    Li, W.H.2
  • 15
    • 79961135005 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna
    • R Development Core Team, R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, Vienna, 2011)
    • (2011) R: A Language and Environment for Statistical Computing
  • 18
    • 0037109119 scopus 로고    scopus 로고
    • Use and misuse of correspondence analysis in codon usage studies
    • G. Perriere, J. Thioulouse, Use and misuse of correspondence analysis in codon usage studies. Nucleic Acids Res. 30, 4548-4555 (2002) (Pubitemid 35277265)
    • (2002) Nucleic Acids Research , vol.30 , Issue.20 , pp. 4548-4555
    • Perriere, G.1    Thioulouse, J.2
  • 19
    • 0028051515 scopus 로고
    • Growth control of influenza A virus by M1 protein: Analysis of transfectant viruses carrying the chimeric M gene
    • J. Yasuda, D.J. Bucher, A. Ishihama, Growth control of influenza A virus by M1 protein: analysis of transfectant viruses carrying the chimeric M gene. J. Virol. 68, 8141-8146 (1994) (Pubitemid 24362704)
    • (1994) Journal of Virology , vol.68 , Issue.12 , pp. 8141-8146
    • Yasuda, J.1    Bucher, D.J.2    Ishihama, A.3
  • 20
    • 0024832702 scopus 로고
    • Characterization of the M protein and nucleoprotein genes of an avian influenza A virus which are involved in host range restriction in monkeys
    • DOI 10.1016/0264-410X(89)90283-1
    • B.R. Murphy, A.J. Buckler-White, W.T. London, M.H. Snyder, Characterization of the M protein and nucleoprotein genes of an avian influenza A virus which are involved in host range restriction in monkeys. Vaccine 7, 557-561 (1989) (Pubitemid 20064271)
    • (1989) Vaccine , vol.7 , Issue.6 , pp. 557-561
    • Murphy, B.R.1    Buckler-White, A.J.2    London, W.T.3    Snyder, M.H.4
  • 21
    • 0026517494 scopus 로고
    • Use of single-gene reassortant viruses to study the role of avian influenza A virus genes in attenuation of wild-type human influenza A virus for squirrel monkeys and adult human volunteers
    • M.L. Clements, E.K. Subbarao, L.F. Fries, R.A. Karron, W.T. London, B.R. Murphy, Use of single-gene reassortant viruses to study the role of avian influenza A virus genes in attenuation of wild-type human influenza A virus for squirrel monkeys and adult human volunteers. J. Clin. Microbiol. 30, 655-662 (1992)
    • (1992) J. Clin. Microbiol. , vol.30 , pp. 655-662
    • Clements, M.L.1    Subbarao, E.K.2    Fries, L.F.3    Karron, R.A.4    London, W.T.5    Murphy, B.R.6
  • 22
    • 0028107688 scopus 로고
    • The influenza virus variant A/FM/1/47-MA possesses single amino acid replacements in the hemagglutinin, controlling virulence, and in the matrix protein, controlling virulence as well as growth
    • C.A. Smeenk, E.G. Brown, The influenza virus variant A/FM/1/47-MA possesses single amino acid replacements in the hemagglutinin, controlling virulence, and in the matrix protein, controlling virulence as well as growth. J. Virol. 68, 530-534 (1994)
    • (1994) J. Virol. , vol.68 , pp. 530-534
    • Smeenk, C.A.1    Brown, E.G.2
  • 23
    • 77956395148 scopus 로고    scopus 로고
    • Codon usage bias and the evolution of influenza A virus. Codon usage biases of influenza virus
    • E.H.M. Wong, D.K. Smith, R. Rabadan, M. Peiris, L.L.M. Poon, Codon usage bias and the evolution of influenza A virus. Codon usage biases of influenza virus. BMC Evol. Biol. 10, 253 (2010)
    • (2010) BMC Evol. Biol. , vol.10 , pp. 253
    • Wong, E.H.M.1    Smith, D.K.2    Rabadan, R.3    Peiris, M.4    Poon, L.L.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.