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Volumn 23, Issue 4, 2012, Pages 745-752

High speed data processing for imaging MS-based molecular histology using graphical processing units

Author keywords

Bioinformatics; GPU; Graphical processor units; Imaging mass spectrometry; Molecular histology

Indexed keywords

BIOMOLECULAR IONS; CLINICAL APPLICATION; COMPUTATIONAL CAPACITY; COST-EFFECTIVE SOLUTIONS; DATA SETS; GPU; GRAPHICAL PROCESSING UNIT (GPUS); GRAPHICAL PROCESSOR UNITS; HIGH-SPEED DATA; HIGH-SPEED PROCESSING; IMAGING MASS SPECTROMETRY; MULTIVARIATE METHODS; OFF-THE-SHELF COMPONENTS; SPEED IMPROVEMENT; TISSUE SAMPLES;

EID: 84862571676     PISSN: 10440305     EISSN: 18791123     Source Type: Journal    
DOI: 10.1007/s13361-011-0327-1     Document Type: Article
Times cited : (14)

References (18)
  • 1
    • 4644326645 scopus 로고    scopus 로고
    • Proteomics in diagnostic pathology-profiling and imaging proteins directly in tissue sections
    • Chaurand, P., Sanders, M.E., Jensen, R.A., Caprioli, R.M.: Proteomics in diagnostic pathology-profiling and imaging proteins directly in tissue sections. Am. J. Pathol. 165, 1057-1068 (2004)
    • (2004) Am. J. Pathol. , vol.165 , pp. 1057-1068
    • Chaurand, P.1    Sanders, M.E.2    Jensen, R.A.3    Caprioli, R.M.4
  • 4
    • 69949095925 scopus 로고    scopus 로고
    • Imaging mass spectrometry of a specific fragment of mitogen-activated protein kinase/extracellular signal-regulated kinase kinase kinase 2 discriminates cancer from uninvolved prostate tissue
    • Cazares, L.H., Troyer, D., Mendrinos, S., Lance, R.A., Nyalwidhe, J.O., Beydoun, H.A., Clements, M.A., Drake, R.R., Semmes, O.J.: Imaging mass spectrometry of a specific fragment of mitogen-activated protein kinase/extracellular signal-regulated kinase kinase kinase 2 discriminates cancer from uninvolved prostate tissue. Clin. Cancer Res. 15, 5541-5551 (2009)
    • (2009) Clin. Cancer Res. , vol.15 , pp. 5541-5551
    • Cazares, L.H.1    Troyer, D.2    Mendrinos, S.3    Lance, R.A.4    Nyalwidhe, J.O.5    Beydoun, H.A.6    Clements, M.A.7    Drake, R.R.8    Semmes, O.J.9
  • 5
    • 79957666608 scopus 로고    scopus 로고
    • Protein signatures for survival and recurrence in metastatic melanoma
    • Hardesty, W.M., Kelley, M.C., Mi, D., Low, R.L., Caprioli, R.M.: Protein signatures for survival and recurrence in metastatic melanoma. J. Proteom. 74, 1002-1014 (2011)
    • (2011) J. Proteom. , vol.74 , pp. 1002-1014
    • Hardesty, W.M.1    Kelley, M.C.2    Mi, D.3    Low, R.L.4    Caprioli, R.M.5
  • 6
    • 77957758578 scopus 로고    scopus 로고
    • Imaging mass spectrometry of myxoid sarcomas identifies proteins and lipids specific to tumor type and grade, and reveals biochemical intratumor heterogeneity
    • Willems, S.M., van Remoortere, A., van Zeijl, R., Deelder, A.M., McDonnell, L.A., Hogendoorn, P.C.W.: Imaging mass spectrometry of myxoid sarcomas identifies proteins and lipids specific to tumor type and grade, and reveals biochemical intratumor heterogeneity. J. Pathol. 222, 400-409 (2010)
    • (2010) J. Pathol. , vol.222 , pp. 400-409
    • Willems, S.M.1    Van Remoortere, A.2    Van Zeijl, R.3    Deelder, A.M.4    McDonnell, L.A.5    Hogendoorn, P.C.W.6
  • 7
    • 61349147183 scopus 로고    scopus 로고
    • MALDI imaging combined with hierarchical clustering as a new tool for the interpretation of complex human cancers
    • Deininger, S.-O., Ebert, M.P., Fütterer, A., Gerhard, M., Röcken, C.: MALDI imaging combined with hierarchical clustering as a new tool for the interpretation of complex human cancers. J. Proteome Res. 7, 5230-5236 (2008)
    • (2008) J. Proteome Res. , vol.7 , pp. 5230-5236
    • Deininger, S.-O.1    Ebert, M.P.2    Fütterer, A.3    Gerhard, M.4    Röcken, C.5
  • 10
    • 77952035951 scopus 로고    scopus 로고
    • Molecular analysis of tumor margins by MALDI mass spectrometry in renal carcinoma
    • Oppenheimer, S.R., Mi, D., Sanders, M.E., Caprioli, R.M.: Molecular analysis of tumor margins by MALDI mass spectrometry in renal carcinoma. J. Proteome Res. 9, 2182-2190 (2010)
    • (2010) J. Proteome Res. , vol.9 , pp. 2182-2190
    • Oppenheimer, S.R.1    Mi, D.2    Sanders, M.E.3    Caprioli, R.M.4
  • 11
    • 79958191849 scopus 로고    scopus 로고
    • Fast parallel tandem mass spectral library searching using GPU hardware acceleration
    • Baumgardner, L.A., Shanmugam, A.K., Lam, H., Eng, J.K., Martin, D. B.: Fast parallel tandem mass spectral library searching using GPU hardware acceleration. J. Proteome Res. 10, 2882-2888 (2011)
    • (2011) J. Proteome Res. , vol.10 , pp. 2882-2888
    • Baumgardner, L.A.1    Shanmugam, A.K.2    Lam, H.3    Eng, J.K.4    Martin, D.B.5
  • 12
    • 67650733220 scopus 로고    scopus 로고
    • Highly accelerated feature detection in proteomics data sets using modern graphics processing units
    • Hussong, R., Gregorius, B., Tholey, A., Hildebrandt, A.: Highly accelerated feature detection in proteomics data sets using modern graphics processing units. Bioinformatics 25, 1937-1943 (2009)
    • (2009) Bioinformatics , vol.25 , pp. 1937-1943
    • Hussong, R.1    Gregorius, B.2    Tholey, A.3    Hildebrandt, A.4
  • 15
    • 0033592606 scopus 로고    scopus 로고
    • Learning the parts of objects by non-negative matrix factorization
    • Lee, D.D., Seung, H.S.: Learning the parts of objects by non-negative matrix factorization. Nature 401, 788-791 (1999)
    • (1999) Nature , vol.401 , pp. 788-791
    • Lee, D.D.1    Seung, H.S.2
  • 17
    • 43549118876 scopus 로고    scopus 로고
    • Automated, feature-based image alignment for high-resolution imaging mass spectrometry of large biological samples
    • Broersen, A., van Liere, R., Altelaar, A.F.M., Heeren, R.M.A., McDonnell, L.A.: Automated, feature-based image alignment for high-resolution imaging mass spectrometry of large biological samples. J. Am. Soc. Mass Spectrom. 19, 823-832 (2008)
    • (2008) J. Am. Soc. Mass Spectrom. , vol.19 , pp. 823-832
    • Broersen, A.1    Van Liere, R.2    Altelaar, A.F.M.3    Heeren, R.M.A.4    McDonnell, L.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.