-
1
-
-
0025294528
-
Combination of 16S rRNA-targeted oligonu-cleotide probes with flow cytometry for analyzing mixed microbial populations
-
Amann, R. I., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R., and Stahl, D. A. (1990). Combination of 16S rRNA-targeted oligonu-cleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56, 1919-1925.
-
(1990)
Appl. Environ. Microbiol.
, vol.56
, pp. 1919-1925
-
-
Amann, R.I.1
Binder, B.J.2
Olson, R.J.3
Chisholm, S.W.4
Devereux, R.5
Stahl, D.A.6
-
2
-
-
78651304624
-
Imprint of past and present environmental conditions on microbiology and bio-geochemistry of coastal quaternary sediments
-
Beck, M., Riedel, T., Graue, J., Köster, J., Kowalski, N., Wu, C. S., Wegener, G., Lipsewers, Y., Freund, H., Böttcher, M. E., Brumsack, H.-J., Cypi-onka, H., Rullkötter, J., and Enge-len, B. (2011). Imprint of past and present environmental conditions on microbiology and bio-geochemistry of coastal quaternary sediments. Biogeosciences 8, 55-68.
-
(2011)
Biogeosciences
, vol.8
, pp. 55-68
-
-
Beck, M.1
Riedel, T.2
Graue, J.3
Köster, J.4
Kowalski, N.5
Wu, C.S.6
Wegener, G.7
Lipsewers, Y.8
Freund, H.9
Böttcher, M.E.10
Brumsack, H.-J.11
Cypi-onka, H.12
Rullkötter, J.13
Enge-len, B.14
-
3
-
-
0023526239
-
Estimating the population size for capture-recapture data with unequal catchability
-
Chao,A. (1987). Estimating the population size for capture-recapture data with unequal catchability. Biometrics 43, 783-791.
-
(1987)
Biometrics
, vol.43
, pp. 783-791
-
-
Chao, A.1
-
4
-
-
58149200948
-
The Ribo-somal Database Project: improved alignments and new tools for rRNA analysis
-
Cole, J. R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R. J., Kulam-Syed-Mohideen, A. S., McGarrell, D. M., Marsh, T., Garrity, G. M., and Tiedje, J. M. (2009). The Ribo-somal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
5
-
-
33846087254
-
Thérèse Mound: a case study of coral bank development in the Belgica Mound Province
-
De Mol, B., Kozachenko, M., Wheeler, A., Alvares, H., Henriet, J. P., and Olu-Le Roy, K. (2007). Thérèse Mound: a case study of coral bank development in the Belgica Mound Province, Porcupine Seabight. Int. J. Earth Sci. 96, 103-120.
-
(2007)
Porcupine Seabight. Int. J. Earth Sci.
, vol.96
, pp. 103-120
-
-
De Mol, B.1
Kozachenko, M.2
Wheeler, A.3
Alvares, H.4
Henriet, J.P.5
Olu-Le Roy, K.6
-
6
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong, E. F. (1992). Archaea in coastal marine environments. Proc. Natl. Acad. Sci. U.S.A. 89, 685-689.
-
(1992)
Proc. Natl. Acad. Sci. U. S. A.
, vol.89
, pp. 685-689
-
-
DeLong, E.F.1
-
7
-
-
58149248732
-
and the Expedition 307 Scientists, Modern carbonate mounds: Porcupine drilling," in Proceedings of the Integrated Ocean Drilling Program, Volume 307 Expedition Reports. Washington
-
doi:10.2204/iodp.proc.307.102.2006
-
Ferdelman, T. G., Kano, A., Williams, T., Henriet, J. P., and the Expedition 307 Scientists. (2006). "Modern carbonate mounds: Porcupine drilling," in Proceedings of the Integrated Ocean Drilling Program, Volume 307 Expedition Reports. Washington, DC: IODP Management International. doi:10.2204/iodp.proc.307.102.2006
-
(2006)
DC: IODP Management International
-
-
Ferdelman, T.G.1
Kano, A.2
Williams, T.3
Henriet, J.P.4
-
8
-
-
22944466930
-
and the Polar-stern ARK-XIX/3A Shipboard Party
-
Foubert, A., Beck, T., Wheeler, A. J., Opderbecke, J., Grehan, A., Klages, M., Thiede, J., Henriet, J.-P., and the Polar-stern ARK-XIX/3A Shipboard Party. (2005). "New view of the Belgica Mounds, Porcupine Seabight, NE Atlantic: preliminary results from the Polarstern ARK-XIX/3a ROV cruise," in Cold Water Corals and Ecosystems, eds A. Freiwald and J. M. Roberts (Heidelberg:Springer-Verlag), 403-415.
-
(2005)
Porcupine Seabight, NE Atlantic: preliminary results from the Polarstern ARK-XIX/3a ROV cruise," in Cold Water Corals and Ecosystems, eds A. Freiwald and J. M. Roberts (Heidelberg:Springer-Verlag)
, pp. 403-415
-
-
Foubert, A.1
Beck, T.2
Wheeler, A.J.3
Opderbecke, J.4
Grehan, A.5
Klages, M.6
Thiede, J.7
Henriet, J.P.8
-
9
-
-
42349100152
-
Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes
-
Frank, J. A., Reich, C. I., Sharma, S., Weisbaum, J. S., Wilson, B. A., and Olsen, G. J. (2008). Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl. Environ. Microbiol. 74, 2461-2470.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 2461-2470
-
-
Frank, J.A.1
Reich, C.I.2
Sharma, S.3
Weisbaum, J.S.4
Wilson, B.A.5
Olsen, G.J.6
-
10
-
-
33644505436
-
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
-
Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A, Lever, M., Lauer, A., Suzuki, M., Takai, K., Delwiche, M., Col-well, F. S., Nealson, K. H., Horikoshi, K., D'Hondt, S., and Jørgensen, B. B. (2006). Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proc. Natl. Acad. Sci. U.S.A. 103, 2815-2820.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 2815-2820
-
-
Inagaki, F.1
Nunoura, T.2
Nakagawa, S.3
Teske, A.4
Lever, M.5
Lauer, A.6
Suzuki, M.7
Takai, K.8
Delwiche, M.9
Col-well, F.S.10
Nealson, K.H.11
Horikoshi, K.12
D'Hondt, S.13
Jørgensen, B.B.14
-
11
-
-
2142857748
-
Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
-
Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Neal-son, K. H., and Horikoshi, K. (2003). Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl. Environ. Micro-biol. 69, 7224-7235
-
(2003)
Appl. Environ. Micro-biol.
, vol.69
, pp. 7224-7235
-
-
Inagaki, F.1
Suzuki, M.2
Takai, K.3
Oida, H.4
Sakamoto, T.5
Aoki, K.6
Neal-son, K.H.7
Horikoshi, K.8
-
12
-
-
37449015299
-
and Integrated Ocean Drilling Program Expedition 307 Scientists, Age constraints on the origin and growth history of a deep-water coral mound in the northeast Atlantic drilled during Integrated Ocean Drilling Program Expedition 307
-
Kano, A., Ferdelman, T. G., Williams, T., Henriet, J. P., Ishikawa, T., Kawa-goe, N., Takashima, C., Kakizaki, Y., Abe, K., Sakai, S., Browning, E. L., Li, X., and Integrated Ocean Drilling Program Expedition 307 Scientists. (2007). Age constraints on the origin and growth history of a deep-water coral mound in the northeast Atlantic drilled during Integrated Ocean Drilling Program Expedition 307. Geology 35, 1051-1054.
-
(2007)
Geology
, vol.35
, pp. 1051-1054
-
-
Kano, A.1
Ferdelman, T.G.2
Williams, T.3
Henriet, J.P.4
Ishikawa, T.5
Kawa-goe, N.6
Takashima, C.7
Kakizaki, Y.8
Abe, K.9
Sakai, S.10
Browning, E.L.11
Li, X.12
-
13
-
-
64749102782
-
Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico
-
Kellogg, C. A., Lisle, J. T., and Galkiewicz, J. P. (2009). Culture-independent characterization of bacterial communities associated with the cold-water coral Lophelia pertusa in the northeastern Gulf of Mexico. Appl. Environ. Microbiol. 75, 2294-2303.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 2294-2303
-
-
Kellogg, C.A.1
Lisle, J.T.2
Galkiewicz, J.P.3
-
14
-
-
0003456793
-
-
2nd Edn, Menlo Park, CA: Benjamin/Cummings. Martin
-
Krebs, C. J. (1989). Ecological Methodology, 2nd Edn. Menlo Park, CA: Benjamin/Cummings. Martin, A. P. (2002). Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl. Environ. Micro-biol. 68, 3673-3682.
-
Ecological Methodology
-
-
Krebs, C.J.1
-
15
-
-
0036324293
-
Phylogenetic approaches for describing and comparing the diversity of microbial communities
-
Martin, A. P. (2002). Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl. Environ. Micro-biol. 68, 3673-3682.
-
(2002)
Appl. Environ. Micro-biol.
, vol.68
, pp. 3673-4368
-
-
Martin, A.P.1
-
16
-
-
78651533203
-
Bio-archive core storage and subsampling procedure for subseafloor molecular biological research
-
Masui, N., Morono, Y., and Inagaki, F. (2009). Bio-archive core storage and subsampling procedure for subseafloor molecular biological research. Sci. Drill. 8, 35-37.
-
(2009)
Sci. Drill.
, vol.8
, pp. 35-37
-
-
Masui, N.1
Morono, Y.2
Inagaki, F.3
-
17
-
-
67650711680
-
Development of 16S rRNA gene-targeted primers for detection of archaeal anaerobic methanotrophs (ANMEs)
-
Miyashita, A., Mochimaru, H., Kazama, H., Ohashi, A., Yamaguchi, T.,Nunoura, T.,Horikoshi, K., Takai,K., and Imachi, H. (2009). Development of 16S rRNA gene-targeted primers for detection of archaeal anaerobic methanotrophs (ANMEs). FEMS Microbiol. Lett. 297, 31-37.
-
(2009)
FEMS Microbiol. Lett.
, vol.297
, pp. 31-37
-
-
Miyashita, A.1
Mochimaru, H.2
Kazama, H.3
Ohashi, A.4
Yamaguchi, T.5
Nunoura, T.6
Horikoshi, K.7
Takai, K.8
Imachi, H.9
-
18
-
-
57149110226
-
Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scle-ractinia) and their implications for the coral's nutrition, health, and distribution
-
Neulinger, S. C., Jarnegren, J., Lud-vigsen, M., Lochte, K., and Dullo, W. C. (2008). Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scle-ractinia) and their implications for the coral's nutrition, health, and distribution. Appl. Environ. Microbiol. 74, 7272-7285.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 7272-7285
-
-
Neulinger, S.C.1
Jarnegren, J.2
Lud-vigsen, M.3
Lochte, K.4
Dullo, W.C.5
-
19
-
-
0013875699
-
Species-diversity and pattern-diversity in the study of ecological succession
-
Pielou, E. C. (1966). Species-diversity and pattern-diversity in the study of ecological succession. J. Theor. Biol. 10, 370-383.
-
(1966)
J. Theor. Biol.
, vol.10
, pp. 370-383
-
-
Pielou, E.C.1
-
20
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribo-somal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J., and Glockner, F. O. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribo-somal RNA sequence data compatible with ARB. Nucleic Acids Res. 35, 7188-7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glockner, F.O.7
-
21
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., Sahl, J. W., Stres, B., Thallinger, G. G., Van Horn, D. J., and Weber, C. F. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
22
-
-
67549142694
-
Inter- and intra-habitat bacterial diversity associated with cold-water corals
-
Schöttner, S., Hoffmann, F., Wild, C., Rapp, H. T., Boetius, A., and Ram-ette, A. (2009). Inter- and intra-habitat bacterial diversity associated with cold-water corals. ISME J. 3, 756-759
-
(2009)
ISME J
, vol.3
, pp. 756-759
-
-
Schöttner, S.1
Hoffmann, F.2
Wild, C.3
Rapp, H.T.4
Boetius, A.5
Ram-ette, A.6
-
23
-
-
0002969802
-
A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons
-
Sørensen,T. (1957). A method of establishing groups of equal amplitude in plant sociology based on similarity of species and its application to analyses of the vegetation on Danish commons. Biologiske Skrifter/Kongelige Danske Vidensk-abernes Selskab 5, 1-34
-
(1957)
Biologiske Skrifter/Kongelige Danske Vidensk-abernes Selskab
, vol.5
, pp. 1-34
-
-
Sørensen, T.1
-
24
-
-
85023884574
-
Microbial communities of deep marine subsurface sediments: molecular and cultivation surveys
-
Teske, A. P. (2006). Microbial communities of deep marine subsurface sediments: molecular and cultivation surveys. Geomicrobiol. J. 23, 357-368.
-
(2006)
Geomicrobiol. J.
, vol.23
, pp. 357-368
-
-
Teske, A.P.1
-
25
-
-
58149265284
-
Subsurface microbiology and biogeochem-istry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307)
-
Webster, G., Blazejak, A., Cragg, B. A., Schippers, A., Sass, H., Rinna, J., Tang, X., Mathes, F., Ferdelman, T. G., Fry, J. C., Weightman, A. J.and Parkes, R. J. (2009). Subsurface microbiology and biogeochem-istry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307). Environ. Microbiol. 11, 239-257.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 239-257
-
-
Webster, G.1
Blazejak, A.2
Cragg, B.A.3
Schippers, A.4
Sass, H.5
Rinna, J.6
Tang, X.7
Mathes, F.8
Ferdelman, T.G.9
Fry, J.C.10
Weightman, A.J.11
Parkes, R.J.12
-
26
-
-
33746716094
-
Prokaryotic community composition and bio-geochemical processes in deep sub-seafloor sediments from the Peru Margin
-
Webster, G., Parkes, R. J., Cragg, B. A., Newberry, C. J., Weightman, A. J., and Fry, J. C. (2006). Prokaryotic community composition and bio-geochemical processes in deep sub-seafloor sediments from the Peru Margin. FEMS Microbiol. Ecol. 58, 65-85.
-
(2006)
FEMS Microbiol. Ecol.
, vol.58
, pp. 65-85
-
-
Webster, G.1
Parkes, R.J.2
Cragg, B.A.3
Newberry, C.J.4
Weightman, A.J.5
Fry, J.C.6
-
27
-
-
4644305740
-
Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments
-
Webster, G., Parkes, R. J., and Weight-man, A. (2004). Widespread occurrence of a novel division of bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments. Appl. Environ. Microbiol. 70, 5708-5713.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 5708-5713
-
-
Webster, G.1
Parkes, R.J.2
Weight-man, A.3
-
28
-
-
30144439304
-
Phylogenetic survey of metabolically active microbial communities associated with the deep-sea coral Lophe-lia pertusa from Apulian plateau Central Mediterranean Sea
-
Yakimov, M. M., Cappello, S., Crisafi, E., Tursi, A., Savini, A., Corselli, C., Scarfi, S., and Giuliano, L. (2006). Phylogenetic survey of metabolically active microbial communities associated with the deep-sea coral Lophe-lia pertusa from Apulian plateau, Central Mediterranean Sea. Deep Sea Res. Part I. 53, 62-75.
-
(2006)
Deep Sea Res. Part 1
, vol.53
, pp. 62-75
-
-
Yakimov, M.M.1
Cappello, S.2
Crisafi, E.3
Tursi, A.4
Savini, A.5
Corselli, C.6
Scarfi, S.7
Giuliano, L.8
|