A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework

Database

Volumn 2012, Issue , 2012, Pages

  Bandrowski, A E ^a   Cachat, J ^a   Li, Y ^b   Muller H M ^b   Sternberg, P W ^b   Ciccarese, P ^c   Clark, T ^c   Marenco, L ^d   Wang, R ^d   Astakhov, V ^a   Grethe, J S ^a   Martone, M E ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

^d YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA;

ARTICLE; BIOLOGY; CLASSIFICATION; COMPUTER PROGRAM; DATA BASE; DOCUMENTATION; FACTUAL DATABASE; HUMAN; METHODOLOGY; NEUROSCIENCE;

ABSTRACTING AND INDEXING AS TOPIC; COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; HUMANS; NEUROSCIENCES; SOFTWARE;

EID: 84862264166     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bas005     Document Type: Article

References (13)

1. Gupta, A., Bug, W., Marenco, L et al. (2008) Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). Neuroinformatics, 6, 205-217.
2. Gardner, D., Akil, H., Ascoli, G.A et al. (2008) The Neuroscience Information Framework: A data and knowledge environment for neuroscience. Neuroinformatics, 6, 149-160.
3. Müller, H.M., Rangarajan, A., Teal, T.K. et al. (2008) Textpresso for neuroscience: Searching the full text of thousands of neuroscience research papers. Neuroinformatics, 6, 195-204.
4. Bug, W.J., Ascoli, G.A., Grethe, J.S. et al. (2008) The NIFSTD and BIRNLex vocabularies: Building comprehensive ontologies for neuroscience. Neuroinformatics, 6, 175-194.
5. Marenco, L., Wang, R., Shepherd, G.M. et al. (2010) The NIF DISCO Framework: Facilitating automated integration of neuroscience content on the web. Neuroinformatics, 8, 101-112.
6. Marenco, L., Ascoli, G.A., Martone, M.E. et al. (2010) The NIF LinkOut broker: A web resource to facilitate federated data integration using NCBI identifiers. Neuroinformatics, 6, 219-227.
7. Ciccarese, P., Ocana, M. and Clark, T. (2011) DOMEO: A web-based tool for semantic annotation of online documents. Paper at Bio-Ontologies, 2011.
8. Ciccarese, P., Ocana, M., Castro, L.J.G. et al. (2011) An open annotation ontology for science on web 3.0. J. Biomed. Semantics, 2 (Suppl. 2), S4.
9. Akil, H., Martone, M.E. and Van Essen, D.C. (2011) Challenges and opportunities in mining neuroscience data. Science, 331, 708-712.
10. Tenenbaum, J.D., Whetzel, P.L., Anderson, K et al. (2011) The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. J. Biomed. Inform., 44, 137-145.
11. Torniai, C., Brush, M., Vasilevsky, N. et al. (2011) Developing an application ontology for biomedical resource annotation and retrieval: Challenges and lessons learned. In: Proceedings of the International Conference on Biomedical Ontology. Buffalo, NY.
12. Gaudet, P., Bairoch, A., Field, D et al. (2011) Towards BioDBcore: A community-defined information specification for biological databases. Database, 2011, baq027; doi:10.1093/database/ baq027.
13. Galperin, M.Y. and Fernández-Suárez, X.M. (2012) The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. Nucleic Acids Res., 40, D1-D8.