메뉴 건너뛰기




Volumn 40, Issue D1, 2012, Pages

Plantmetabolomics.org: Mass spectrometry-based Arabidopsis metabolomics-database and tools update

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; DATA ANALYSIS; DATA BASE; DATA MINING; GENE FUNCTION; HYPOTHESIS; MASS SPECTROMETRY; METABOLOMICS; MUTANT; PLANT GENE; PLANT METABOLISM; PLANT STRUCTURES; PLANTMETABOLOMICS.ORG DATABASE; PRIORITY JOURNAL;

EID: 84862214842     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkr969     Document Type: Article
Times cited : (21)

References (23)
  • 3
    • 38949104774 scopus 로고    scopus 로고
    • Quality control for plant metabolomics: Reporting MSI-compliant studies
    • DOI 10.1111/j.1365-313X.2007.03387.x
    • Fiehn,O., Wohlgemuth,G., Scholz,M., Kind,T., Lee do,Y., Lu,Y., Moon,S. and Nikolau,B. (2008) Quality control for plant metabolomics: reporting MSI-compliant studies. Plant J., 53, 691-704. (Pubitemid 351224695)
    • (2008) Plant Journal , vol.53 , Issue.4 , pp. 691-704
    • Fiehn, O.1    Wohlgemuth, G.2    Scholz, M.3    Kind, T.4    Lee, D.Y.5    Lu, Y.6    Moon, S.7    Nikolau, B.8
  • 6
    • 84861331816 scopus 로고    scopus 로고
    • Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity
    • Matsuda,F., Nakabayashi,R., Sawada,Y., Suzuki,M., Hirai,M.Y., Kanaya,S. and Saito,K. (2011) Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity. Front. Plant Sci., 2, 40.
    • (2011) Front. Plant Sci. , vol.2 , pp. 40
    • Matsuda, F.1    Nakabayashi, R.2    Sawada, Y.3    Suzuki, M.4    Hirai, M.Y.5    Kanaya, S.6    Saito, K.7
  • 8
    • 77955695587 scopus 로고    scopus 로고
    • Creation of a genome-wide metabolic pathway database for populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants
    • Zhang,P., Dreher,K., Karthikeyan,A., Chi,A., Pujar,A., Caspi,R., Karp,P., Kirkup,V., Latendresse,M., Lee,C. et al. (2010) Creation of a genome-wide metabolic pathway database for populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants. Plant Physiol., 153, 1479-1491.
    • (2010) Plant Physiol. , vol.153 , pp. 1479-1491
    • Zhang, P.1    Dreher, K.2    Karthikeyan, A.3    Chi, A.4    Pujar, A.5    Caspi, R.6    Karp, P.7    Kirkup, V.8    Latendresse, M.9    Lee, C.10
  • 9
    • 36048945922 scopus 로고    scopus 로고
    • ImageJ for microscopy
    • Collins,T.J. (2007) ImageJ for microscopy. BioTechniques, 43, S25-S30.
    • (2007) BioTechniques , vol.43
    • Collins, T.J.1
  • 12
    • 33747019547 scopus 로고    scopus 로고
    • Centering, scaling, and transformations: Improving the biological information content of metabolomics data
    • van den Berg,R.A., Hoefsloot,H.C., Westerhuis,J.A., Smilde,A.K. and van der Werf,M.J. (2006) Centering, scaling, and transformations: improving the biological information content of metabolomics data. BMC Genom., 7, 142.
    • (2006) BMC Genom. , vol.7 , pp. 142
    • Van Den Berg, R.A.1    Hoefsloot, H.C.2    Westerhuis, J.A.3    Smilde, A.K.4    Van Der Werf, M.J.5
  • 14
    • 0002965815 scopus 로고
    • The proof and measurement of association between two things
    • Spearman,C. (1904) The proof and measurement of association between two things. Am. J. Psychol., 15, 72-101.
    • (1904) Am. J. Psychol. , vol.15 , pp. 72-101
    • Spearman, C.1
  • 16
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • 2001
    • Breiman,L. (2001) Random forests. Mach. Learn., 2001, 45, 5-32.
    • (2001) Mach. Learn. , vol.45 , pp. 5-32
    • Breiman, L.1
  • 17
    • 30644464444 scopus 로고    scopus 로고
    • Gene selection and classification of microarray data using random forest
    • Díaz-Uriarte,R. and Alvarez de Andrés,S. (2006) Gene selection and classification of microarray data using random forest. BMC Bioinform., 7, 3.
    • (2006) BMC Bioinform. , vol.7 , pp. 3
    • Díaz-Uriarte, R.1    Alvarez De Andrés, S.2
  • 18
    • 0345040873 scopus 로고    scopus 로고
    • Classification and regression by randomForest
    • Liaw,A. and Wiener,M. (2002) Classification and regression by randomForest. R. News, 2/3, 18-22.
    • (2002) R. News , vol.2-3 , pp. 18-22
    • Liaw, A.1    Wiener, M.2
  • 19
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa,M., Goto,S., Furumichi,M., Tanabe,M. and Hirakawa,M. (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res., 38, D355-D360.
    • (2010) Nucleic Acids Res. , vol.38
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 21
  • 22
    • 77956501805 scopus 로고    scopus 로고
    • PathwayAccess: CellDesigner plugins for pathway databases
    • Van Hemert,J.L. and Dickerson,J.A. (2010) PathwayAccess: CellDesigner plugins for pathway databases. Bioinformatics, 26, 2345-2346.
    • (2010) Bioinformatics , vol.26 , pp. 2345-2346
    • Van Hemert, J.L.1    Dickerson, J.A.2
  • 23
    • 34548841428 scopus 로고    scopus 로고
    • The Golm Metabolome Database: A database for GC-MS based metabolite profiling
    • Nielsen,J. and Jewett,M. (eds), Springer-Verlag, Berlin, Heidelberg, New York
    • Hummel,J., Selbig,J., Walther,D. and Kopka,J. (2007) The Golm Metabolome Database: a database for GC-MS based metabolite profiling. In: Nielsen,J. and Jewett,M. (eds), Metabolomics. Springer-Verlag, Berlin, Heidelberg, New York, pp. 75-96.
    • (2007) Metabolomics , pp. 75-96
    • Hummel, J.1    Selbig, J.2    Walther, D.3    Kopka, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.