Facilitated molecular typing of shigella isolates using ERIC-PCR

American Journal of Tropical Medicine and Hygiene

Volumn 86, Issue 6, 2012, Pages 1018-1025

  Kosek, Margaret ^a,f   Yori, Pablo Peñataro ^b,f   Gilman, Robert H ^a,f   Vela, Henry ^b,f   Olortegui, Maribel Paredes ^c,f   Chavez, Cesar Banda ^c,f   Calderon, Maritza ^b,f   Bao, Juan Perez ^d,f   Hall, Eric ^d,f   Maves, Ryan ^d,f   Burga, Rosa ^d,f   Sanchez, Graciela Meza ^e,f  

^a JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

^b UNIVERSIDAD PERUANA CAYETANO HEREDIA   (Peru)

^c ASOCIACIÓN BENÉFICA PRISMA   (Peru)

^d Peru   (Peru)

^e MINISTERIO DE SALUD   (Peru)

^f Hospital Regional   (Peru)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM ISOLATE; CLONAL VARIATION; CONTROLLED STUDY; DIARRHEA; ENTEROBACTERIAL REPETITIVE INTERGENIC SEQUENCE BASED POLYMERASE CHAIN REACTION; INTERMETHOD COMPARISON; MOLECULAR TYPING; NONHUMAN; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; SEROTYPING; SHIGELLA; SHIGELLA BOYDII; SHIGELLA DYSENTERIAE; SHIGELLA FLEXNERI; SHIGELLA SONNEI; SHIGELLOSIS;

BACTERIAL TYPING TECHNIQUES; DIARRHEA; DNA, BACTERIAL; DNA, INTERGENIC; DYSENTERY, BACILLARY; ELECTROPHORESIS, GEL, PULSED-FIELD; HUMANS; POLYMERASE CHAIN REACTION; PREVALENCE; REPETITIVE SEQUENCES, NUCLEIC ACID; SEROTYPING; SHIGELLA;

EID: 84862162318     PISSN: 00029637     EISSN: None     Source Type: Journal    
DOI: 10.4269/ajtmh.2012.11-0671     Document Type: Article

References (29)

1. Riddle MS, Sanders JW, Putnam SD, Tribble DR, 2006. Incidence, etiology, and impact of diarrhea among long-term travelers (US military and similar populations): a systematic review. Am J Trop Med Hyg 74: 891-900. (Pubitemid 46774414)
2. Agtini MD, Soeharno R, Lesmana M, Punjabi NH, Simanjuntak C, Wangsasaputra F, Nurdin D, Pulungsih SP, Rofiq A, Santoso H, Pujarwoto H, Sjahrurachman A, Sudarmono P, Von Seidlein L, Deen JL, Ali M, Lee H, Kim DR, Han O, Park JK, Suwandono A, Ingerani, Oyofo BA, Campbell JR, Beecham HJ, Corwin AL, Clemens JD, 2005. The burden of diarrhoea, shigellosis, and cholera in North Jakarta, Indonesia: findings from 24 months surveillance. BMC Infect Dis 5: 89-100.
3. Jones FR, Sanchez JL, Meza R, Batsel TM, Burga R, Canal E, Block K, Perez J, Bautista CT, Escobedo J, Walz SE, 2004. Short report: high incidence of shigellosis among Peruvian soldiers deployed in the Amazon River basin. Am J Trop Med Hyg 70: 663-665. (Pubitemid 38802398)
4. Thornton SA, Sherman SS, Farkas T, Zhong W, Torres P, Jiang X, 2005. Gastroenteritis in US Marines during Operation Iraqi Freedom. Clin Infect Dis 40: 519-525. (Pubitemid 40270220)
5. Kolavic SA, Kimura A, Simons SL, Slutsker L, Barth S, Haley CE, 1997. An outbreak of Shigella dysenteriae type 2 among laboratory workers due to intentional food contamination. JAMA 278: 396-398. (Pubitemid 27327458)
6. Anon, 1995. Public health impact of Rwandan refugee crisis: what happened in Goma, Zaire, in July, 1994? Goma Epidemiology Group. Lancet 345: 339-344.
7. Buysse JM, Hartman AB, Strockbine N, Venkatesan M, 1995. Genetic polymorphism of the ipaH multicopy antigen gene in Shigella spps. and enteroinvasive Escherichia coli. Microb Pathog 19: 335-349.
8. Karaolis DK, Lan R, Reeves PR, 1994. Sequence variation in Shigella sonnei (Sonnei), a pathogenic clone of Escherichia coli, over four continents and 41 years. J Clin Microbiol 32: 796-802. (Pubitemid 24062963)
9. Soldati L, Piffaretti JC, 1991. Molecular typing of Shigella strains using pulsed field gel electrophoresis and genome hybridization with insertion sequences. Res Microbiol 142: 489-498.
10. Coimbra RS, Grimont F, Grimont PA, 1999. Identification of Shigella serotypes by restriction of amplified O-antigen gene cluster. Res Microbiol 150: 543-553. (Pubitemid 29510638)
11. Liu PY, Lau YJ, Hu BS, Shyr JM, Shi ZY, Tsai WS, Lin YH, Tseng CY, 1995. Analysis of clonal relationships among isolates of Shigella sonnei by different molecular typing methods. J Clin Microbiol 33: 1779-1783.
12. Navia MM, Capitano L, Ruiz J, Vargas M, Urassa H, Schellemberg D, Gascon J, Vila J, 1999. Typing and characterization of mechanisms of resistance of Shigella spp. isolated from feces of children under 5 years of age from Ifakara, Tanzania. J Clin Microbiol 37: 3113-3117. (Pubitemid 29455191)
13. Bando SY, do Valle GR, Martinez MB, Trabulsi LR, Moreira-Filho CA, 1998. Characterization of enteroinvasive Escherichia coli and Shigella strains by RAPD analysis. FEMS Microbiol Lett 165: 159-165. (Pubitemid 28359449)
14. Kosek M, Yori PP, Pan WK, Olortegui MP, Gilman RH, Perez J, Chavez CB, Sanchez GM, Burga R, Hall E, 2008. Epidemiology of highly endemic multiply antibiotic-resistant shigellosis in children in the Peruvian Amazon. Pediatrics 122: e541-e549.
15. Hunter PR, Gaston MA, 1988. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol 26: 2465-2466.
16. Grundmann H, Hori S, Tanner G, 2001. Determining confidence intervals when measuring genetic diversity and the discriminatory abilities of typing methods for microorganisms. J Clin Microbiol 39: 4190-4192. (Pubitemid 33029810)
17. Surdeanu M, Ciudin L, Pencu E, Straut M, 2003. Comparative study of three different DNA fingerprint techniques for molecular typing of Shigella flexneri strains isolated in Romania. Eur J Epidemiol 18: 703-710. (Pubitemid 36998951)
18. Tenover FC, Arbeit RD, Goering RV, Mickelsen PA, Murray BE, Persing DH, Swaminathan B, 1995. Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 33: 2233-2239.
19. Wilson LA, Sharp PM, 2006. Enterobacterial repetitive intergenic consensus (ERIC) sequences in Escherichia coli: Evolution and implications for ERIC-PCR. Mol Biol Evol 23: 1156-1168. (Pubitemid 43781591)
20. Finger SA, Velapatino B, Kosek M, Santivanez L, Dailidiene D, Quino W, Balqui J, Herrera P, Berg DE, Gilman RH, 2006. Effectiveness of enterobacterial repetitive intergenic consensus PCR and random amplified polymorphic DNA fingerprinting for Helicobacter pylori strain differentiation. Appl Environ Microbiol 72: 4713-4716. (Pubitemid 44078796)
21. Drinka PJ, Stemper ME, Gauerke CD, Miller JM, Reed KD, 2004. The identification of genetically related bacterial isolates using pulsed field gel electrophoresis on nursing home units: a clinical experience. J Am Geriatr Soc 52: 1373-1377. (Pubitemid 39038213)
22. Dalla-Costa LM, Irino K, Rodrigues J, Rivera IN, Trabulsi LR, 1998. Characterisation of diarrhoeagenic Escherichia coli clones by ribotyping and ERIC-PCR. J Med Microbiol 47: 227-234. (Pubitemid 28090052)
23. Manges AR, Natarajan P, Solberg OD, Dietrich PS, Riley LW, 2006. The changing prevalence of drug-resistant Escherichia coli clonal groups in a community: evidence for community outbreaks of urinary tract infections. Epidemiol Infect 134: 425-431. (Pubitemid 43280255)
24. Silbert S, Pfaller MA, Hollis RJ, Barth AL, Sader HS, 2004. Evaluation of three molecular typing techniques for non-fermentative Gram-negative bacilli. Infect Control Hosp Epidemiol 25: 847-851. (Pubitemid 40036761)
25. Davin-Regli A, Bollet C, Chamorey E, Colonna D'istria V, Cremieux A, 1998. A cluster of cases of infections due to Aeromonas hydrophila revealed by combined RAPD and ERIC-PCR. J Med Microbiol 47: 499-504. (Pubitemid 28267568)
26. Wong HC, Lin CH, 2001. Evaluation of typing of vibrio parahaemolyticus by three PCR methods using specific primers. J Clin Microbiol 39: 4233-4240. (Pubitemid 33120942)
27. Gazouli M, Kaufmann ME, Tzelepi E, Dimopoulou H, Paniara O, Tzouvelekis LS, 1997. Study of an outbreak of cefoxitin-resistant Klebsiella pneumoniae in a general hospital. J Clin Microbiol 35: 508-510. (Pubitemid 27043936)
28. Souza RA, Pitondo-Silva A, Falcao DP, Falcao JP, 2010. Evaluation of four molecular typing methodologies as tools for determining taxonomy relations and for identifying species among Yersinia isolates. J Microbiol Methods 82: 141-150.
29. Sander A, Ruess M, Bereswill S, Schuppler M, Steinbrueckner B, 1998. Comparison of different DNA fingerprinting techniques for molecular typing of Bartonella henselae isolates. J Clin Microbiol 36: 2973-2981. (Pubitemid 28429424)