Development of microsatellite primers for Jatropha curcas (Euphorbiaceae) and transferability to congeners

American Journal of Botany

Volumn 99, Issue 6, 2012, Pages 237-239

  de Bressan, Eduardo A ^a   Scotton, Danielle C ^a   Ferreira, Renato R ^a   Jorge, Erika C ^b   Sebbenn, Alexandre M ^c   Gerald, Lee T S ^d   Figueira, Antonio ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^c Instituto Florestal de Sao Paulo   (Brazil)

^d FEDERAL UNIVERSITY OF SÃO CARLOS   (Brazil)

Author keywords

Biofuel; Euphorbiaceae; Genetic diversity; Jatropha curcas; Phorbol; Physic nut

Indexed keywords

MICROSATELLITE DNA; PLANT DNA; PRIMER DNA;

ALLELE; BIOFUEL; CLONE; CONSERVATION GENETICS; DICOTYLEDON; GENE FLOW; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; POLYMORPHISM; REPRODUCTIVE STRATEGY;

ALLELE; ARTICLE; CHEMISTRY; CLASSIFICATION; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GENOTYPE; HEVEA; JATROPHA; MANIHOT; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT LEAF; RICINUS COMMUNIS; SPECIES DIFFERENCE;

ALLELES; CASTOR BEAN; DNA PRIMERS; DNA, PLANT; GENETIC VARIATION; GENOTYPE; HEVEA; JATROPHA; MANIHOT; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PLANT LEAVES; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EUPHORBIACEAE; HEVEA BRASILIENSIS; JATROPHA CURCAS; MANIHOT ESCULENTA; RICINUS COMMUNIS;

EID: 84862119084     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1100532     Document Type: Article

References (11)

1. BASHA, S. D., F. GEORGE, H. P. S. MAKKAR, K. BECHER, and M. SUJATHA. 2009. A comparative study of biochemical traits and molecular markers for assessment of genetic relationships between Jatropha curcas L. germplasm from different countries. Plant Science 176: 812-823.
2. BERCHMANS, H. J., and S. HIRATA. 2008. Biodiesel production from crude Jatropha curcas L. seed oil with a high content of free fatty acids. Bioresource Technology 99: 1716-1721.
3. BILLOTTE, N., P. J. L. LAGODA, A. M. RISTERUCCI, and F. C. BAURENS. 1999. Microsatellite-enriched libraries: Applied methodology for the development of SSR markers in tropical crops. Fruits 54: 277-288.
4. CRESTE, S., A. TULMANN-NETO, and A. FIGUEIRA. 2001. A detection of single sequence repeat polymorphisms in denaturing polyacrylamide sequencing gels by silver staining. Plant Molecular Biology Reporter 19: 299-306.
5. KIJAS, J. M., J. C. FOWLER, C. A. GARBETT, and M. R. THOMAS. 1994. Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin coated magnetic particles. BioTechniques 16: 656-662.
6. LEWIS, P. O., and D. ZAYKIN. 2002. Genetic Data Analysis: Computer program for the analysis of allelic data. Version 1.1. Free program distributed by the authors over the internet. Website http://hydrodictyon.eeb.uconn.edu/people/plewis/software.php [accessed 29 March 2012].
7. MARTINS, W. A., D. C. S. LUCAS, K. F. S. NEVES, and D. J. BERTIOLI. 2009. WebSat: A web software for microsatellite marker development. Bioinformation 6: 282-283.
8. RAJU, A. J. S., and V. EZRADANAM. 2002. Pollination ecology and fruiting behavior in a monoecious species, Jatropha curcas L. (Euphorbiaceae). Current Science 83: 1395-1398.
9. ROZEN, S., and H. J. SKALETSKY. 2000. Primer3 on the WWW for general users and for biologist programmers. In S. Krawetz and S. Misener [eds.], Bioinformatics, methods and protocols: Methods in molecular biology, 365-386. Humana Press, Totowa, New Jersey, USA.
10. SERENO, M. L., R. VENCOVSKY, P. S. B. ALBUQUERQUE, and A. FIGUEIRA. 2006. Genetic diversity and natural population structure of cacao (Theobroma cacao L.) from the Brazilian Amazon evaluated by microsatellite markers. Conservation Genetics 7: 13-24.
11. SUDHEER, P. D. V. N., H. RAHMAN, S. G. MASTAN, and M. P. REDDY. 2010. Isolation of novel microsatellites using FIASCO by dual probe enrichment from Jatropha curcas L. and study on genetic equilibrium and diversity of Indian population revealed by isolated microsatellites. Molecular Biology Reports 37: 3785-3793.