Phosphoproteomic investigation of a solvent producing bacterium Clostridium acetobutylicum

Applied Microbiology and Biotechnology

Volumn 95, Issue 1, 2012, Pages 201-211

  Bai, Xue ^a,b   Ji, Zhihong ^b,c  

^a Chinese Academy of Sciences   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c INSTITUTE OF CHEMISTRY   (China)

Author keywords

Biological solvent production; Clostridium acetobutylicum; Mass spectrometry; Phosphoproteome

Indexed keywords

ACIDOGENESIS; BIOINFORMATIC ANALYSIS; CARBON METABOLISM; CLOSTRIDIUM ACETOBUTYLICUM; EVOLUTIONARY DIVERSITY; HIGH CONFIDENCE; LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY-MASS SPECTROMETRIES; PHOSPHOPEPTIDES; PHOSPHOPROTEOME; PHOSPHORYLATED PROTEINS; PROTEIN PHOSPHORYLATION; PROTEIN SEQUENCES; SOLVENT PRODUCTION; SOLVENTOGENESIS; TIO;

AMINO ACIDS; BIOINFORMATICS; CYTOLOGY; MASS SPECTROMETRY; METABOLISM; PHOSPHORYLATION; SOLVENTS; TITANIUM DIOXIDE;

PROTEINS;

ABC TRANSPORTER; ACETATE KINASE; ACETIC ACID; ACETONE; ACETYL COENZYME A ACETYLTRANSFERASE; ALANYL TRANSFER RNA SYNTHETASE; ALCOHOL; ALDEHYDE DEHYDROGENASE; BUTANOL; BUTYRIC ACID; CHAPERONIN; ELONGATION FACTOR G; METHIONINE ADENOSYLTRANSFERASE; PHOSPHATE BUTYRYLTRANSFERASE; PHOSPHOGLYCERATE KINASE; PHOSPHOPEPTIDE; PHOSPHOPROTEOME; PROLINE TRANSFER RIBONUCLEIC ACID SYNTHETASE; PROTEIN DNAK; PROTEOME; PYRUVATE KINASE; PYRUVATE SYNTHASE; RIBOSOMAL PROTEIN L1; RIBOSOMAL PROTEIN L21; SERINE; SOLVENT; THREONINE; TITANIUM DIOXIDE; TYROSINE; UNCLASSIFIED DRUG; UNINDEXED DRUG;

BACTERIUM; BIOINFORMATICS; CYTOPLASM; EVOLUTIONARY BIOLOGY; MASS SPECTROMETRY; METABOLISM; MOLECULAR ANALYSIS; PEPTIDE; PROTEIN; PROTEOMICS; SOLVENT; TITANIUM;

ACCURACY; AMINO ACID SEQUENCE; ARTICLE; BACILLUS SUBTILIS; BIOINFORMATICS; CARBON METABOLISM; CLOSTRIDIUM ACETOBUTYLICUM; CYTOPLASM; ESCHERICHIA COLI; LACTOCOCCUS LACTIS; LIQUID CHROMATOGRAPHY; MOLECULAR EVOLUTION; NONHUMAN; PHOSPHOPROTEOMICS; PROTEIN LOCALIZATION; PROTEIN PHOSPHORYLATION; PROTEOMICS; SEQUENCE HOMOLOGY; STREPTOCOCCUS PNEUMONIAE; TANDEM MASS SPECTROMETRY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BIOTECHNOLOGY; CHROMATOGRAPHY, LIQUID; CLOSTRIDIUM ACETOBUTYLICUM; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PHOSPHOPROTEINS; PHOSPHORYLATION; PROTEOME; PROTEOMICS; SOLVENTS;

BACTERIA (MICROORGANISMS); CLOSTRIDIUM; CLOSTRIDIUM ACETOBUTYLICUM;

EID: 84862026384     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-012-4156-3     Document Type: Article

References (37)

1. Bai X, Zhao J, Wang Q, Tong W, Zhang J, Zi J, Chen Z, Liu S, Wang Q (2010) Phosphoproteomic investigation of Clostridium acetobutylicum. Chin J Biotech 26:1357-1362
2. Balodimos IA, Rapaport E, Kashket ER (1990) Protein phosphorylation in response to stress in Clostridium acetobutylicum. Appl Environ Microb 56:2170-2173 (Pubitemid 20218596)
3. Bermejo LL, Welker NE, Papoutsakis ET (1998) Expression of Clostridium acetobutylicum ATCC824 genes in Escherichia coli for acetone production and acetate detoxification. Appl Environ Microb 64:1079-1085 (Pubitemid 28108490)
4. Chen JS (1995) Alcohol dehydrogenase multiplicity and relatedness in the solvent-producing Clostridia. FEMS Microbiol Rev 17:263-273
5. Cozzone AJ (2005) Role of protein phosphorylation on serine/threonine and tyrosine in the virulence of bacterial pathogens. J Mol Microbiol Biotechnol 9:198-213
6. Deutscher J, Saier MH Jr (2005) Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established. J Mol Microbiol Biotechnol 9:125-131
7. Deutscher J, Francke C, Postma PW (2006) How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol Mol Biol 70:939-1031
8. Dürre P (2008) Fermentative butanol production. Ann NY Acad Sci 1125:353-362
9. Dürre P, Fischer R-J, Kuhn A, Lorenz K, Schreiber W, Stürzenhofecker B, Ullmann S, Winzer K, Sauer U (1995) Solventogenic enzymes of Clostridium acetobutylicum: catalytic properties, genetic organization, and transcriptional regulation. FEMS Microbiol Rev 17:251-262
10. Fischer RJ, Helms J, Dürre P (1993) Cloning, sequencing, and molecular analysis of the sol operon of Clostridium acetobutylicum, a chromosomal locus involved in solventogenesis. J Bacteriol 175 (21):6959-6969 (Pubitemid 23322448)
11. Girbal L, Soucaille P (1998) Regulation of solvent production in Clostridium acetobutylicum. Trends Biotechnol 16:11-16 (Pubitemid 28064813)
12. Grimmler C, Janssen H, Krauße D, Fischer RJ, Bahl H, Dürre P, Liebl W, Ehrenreich A (2011) Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum. J Mol Microbiol Biotechnol 20:1-15
13. Grupe H, Gottschalk G (1992) Physiological events in Clostridium acetobutylicum during the shift from acidogenesis to solventogenesis in continuous culture and presentation of a model for shift induction. Appl Environ Microb 58:3896-3902
14. Hartmanis MG (1987) Butyrate kinase from Clostridium acetobutylicum. J Biol Chem 262:617-621
15. Hartmanis MGN, Klason T, Gatenbeck S (1984) Uptake and activation of acetate and butyrate in Clostridium acetobutylicum. Appl Environ Microb 20:66-71 (Pubitemid 14070566)
16. Hoffert J, Knepper M (2008) Taking aim at shotgun phosphoproteomics. Anal Biochem 375:1-10
17. Holt RA, Stephens GM, Morris JG (1984) Production of solvents by Clostridium acetobutylicum cultures maintained at neutral pH. Appl Environ Microb 48:1166-1170 (Pubitemid 15190688)
18. Janssen H, Döring C, Ehrenreich A, Voigt B, Hecker M, Bahl H, Fischer R-J (2010) A proteomic and transcriptional view of acidogenic and solventogenic steady-state cells of Clostridium acetobutylicum in a chemostat culture. Appl Environ Microb 87:2209-2226
19. Jones DT, Woods DR (1986) Acetone-butanol fermentation revisited. Microbiol Res 50:484-524 (Pubitemid 17202900)
20. Klein G, Dartigalongue C, Raina S (2003) Phosphorylation-mediated regulation of heat shock response in Escherichia coli. Mol Microbiol 48:269-285 (Pubitemid 36411482)
21. Larsen MR, Thingholm TE, Jensen ON, Roepstorff P, Jørgensen TJD (2005) Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns. Mol Cell Proteomics 4:873-886 (Pubitemid 41309146)
22. Macek B, Mijakovic I, Olsen JV, Gnad F, Kumar C, Jensen PR, Mann M (2007) The Serine/Threonine/Tyrosine phosphoproteome of the model bacterium Bacillus subtilis. Mol Cell Proteomics 6:697-707 (Pubitemid 46630102)
23. Macek B, Gnad F, Soufi B, Kumar C, Olsen JV, Mijakovic I, Mann M (2008) Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation. Mol Cell Proteomics 7:299-307 (Pubitemid 351298444)
24. Mijakovic I, Petranovic D, Macek B, Cepo T, Mann M, Davies J, Jensen PR, Vujaklija D (2006) Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine. Nucleic Acids Res 34:1588-1596
25. Nölling J, Breton G, Omelchenko MV, Makarova KS, Zeng Q, Gibson R, Lee HM, Dubois J, Qiu D, Hitti J, GTC Sequencing Center Production Finishing, Teams B, Wolf YI, Tatusov RL, Sabathe F, Doucette-Stamm L, Soucaille P, Daly MJ, Bennett GN, Koonin EV, Smith DR (2001) Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J Bacteriol 183:4823-4838 (Pubitemid 32708967)
26. Pich A, Bahl H (1991) Purification and characterization of the DNA-dependent RNA polymerase from Clostridium acetobutylicum. J Bacteriol 173:2120-2124
27. Ravagnani A, Jennert KCB, Steiner E, Grünberg R, Jefferies JR, Wilkinson SR, Young DI, Tidswell EC, Brown DP, Youngman P, Morris JG, Young M (2000) Spo0A directly controls the switch from acid to solvent production in solvent-forming Clostridia. Mol Microbiol 37:1172-1185
28. Roos JW, McLaughlin JK, Papoutsakis ET (1985) The effect of pH on nitrogen supply, cell lysis, and solvent production in fermentations of Clostridium acetobutylicum. Biotechnol Bioeng 27:681-694 (Pubitemid 15121249)
29. Schaffer S, Isci N, Zickner B, Dürre P (2002) Changes in protein synthesis and identification of proteins specifically induced during solventogenesis in Clostridium acetobutylicum. Electrophoresis 23:110-121
30. Sivagnanam K, Raghavan VG, Shah M, Hettich RL, Verberkmoes NC, Lefsrud MG (2011) Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose. Proteome Sci 9:66
31. Soufi B, Gnad F, Jensen PR, Petranovic D, Mann M, Mijakovic I, Macek B (2008) The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins. Proteomics 8:3486-3493
32. Sullivan L, Bennett GN (2006) Proteome analysis and comparison of Clostridium acetobutylicum ATCC 824 and Spo0A strain variants. J Ind Microbiol Biotechnol 33:298-308 (Pubitemid 43345195)
33. Sun X, Ge F, Xiao C-L, Yin X-F, Ge R, Zhang L-H, He Q-Y (2009) Phosphoproteomic analysis reveals the multiple roles of phosphorylation in pathogenic bacterium Streptococcus pneumoniae. J Proteome Res 9:275-282
34. Thingholm TE, Jensen ON, Larsen MR (2009) Analytical strategies for phosphoproteomics. Proteomics 9:1451-1468
35. Wang S, Zhang Y, Dong H, Mao S, Zhu Y, Wang R, Luan G, Li Y (2011) Formic acid triggers the "acid crash" of acetone-butanolethanol fermentation by Clostridium acetobutylicum. Appl Environ Microb 77:1674-1680
36. Wiesenborn DP, Rudolph FB, Papoutsakis ET (1989) Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis. Appl Environ Microb 55:317-322
37. Winzer K, Lorenz K, Dürre P (1997) Acetate kinase from Clostridium acetobutylicum: a highly specific enzyme that is actively transcribed during acidogenesis and solventogenesis. Microbiol 143:3279-3286 (Pubitemid 27470176)