Mapping enhancer and promoter interactions

Cell Research

Volumn 22, Issue 5, 2012, Pages 789-790

  Ernst, Jason ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE;

ARTICLE; CD4+ T LYMPHOCYTE; CHROMATIN; ENHANCER REGION; GENETICS; HUMAN; IMMUNOLOGY; METABOLISM; PROMOTER REGION;

CD4-POSITIVE T-LYMPHOCYTES; CHROMATIN; ENHANCER ELEMENTS, GENETIC; HISTONES; HUMANS; PROMOTER REGIONS, GENETIC;

EID: 84862005740     PISSN: 10010602     EISSN: 17487838     Source Type: Journal    
DOI: 10.1038/cr.2012.49     Document Type: Article

References (14)

1. Heintzman ND, Stuart RK, Hon G, et al. Distinct and predictiVe chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 2007; 39:311-318.
2. Heintzman ND, Hon GC, Hawkins RD, et al. Histone modifications at human enhancers reflect global cell-typespecific gene expression. Nature 2009; 459:108-112.
3. Ernst J, Kheradpour P, Mikkelsen TS, et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature 2011; 473:43-49.
4. Sakabe NJ, SaVic D, Nobrega MA. Transcriptional enhancers in deVelopment and disease. Genome Biol 2012; 13:238.
5. Schadt EE, Molony C, Chudin E, et al. Mapping the genetic architecture of gene expression in human liVer. PLoS Biol 2008; 6:e107.
6. de Wit E, de Laat W. A decade of 3C technologies: Insights into nuclear organization. Genes DeV 2012; 26:11-24.
7. Dekker J, Rippe K, Dekker M, Kleckner N. Capturing chromosome conformation. Science 2002; 295:1306-1311.
8. Lieberman-Aiden E,Van Berkum NL, Williams L, et al. ComprehensiVe mapping of long-range interactions reVeals folding principles of the human genome. Science 2009; 326:289-293.
9. Fullwood MJ, Liu MH, Pan YF, et al. An oestrogen-receptor-alpha-bound human chromatin interactome. Nature 2009; 462:58-64.
10. Handoko L, Xu H, Li G, et al. CTCFmediated functional chromatin interactome in pluripotent cells. Nat. Genet. 2011; 43:630-638.
11. Li G, et al. ExtensiVe promoter-centered chromatin interactions proVide a topological basis for transcription regulation. Cell 2012; 148:84-98.
12. ChepeleV I, Wei G, Wangsa D, Tang Q, Zhao K. Characterization of genomewide enhancer-promoter interactions reVeals co-expression of interacting genes and modes of higher order chromatin organization. Cell Res 2012; 22:490-503.
13. Barski A, Cuddapah S, Cui K, et al. High-resolution profiling of histone methylations in the human genome. Cell 2007; 129:823-837.
14. Visel A, Blow MJ, Li Z, et al. ChIPseq accurately predicts tissue-specific actiVity of enhancers. Nature 2009; 457:854-858.