Improved signal peptide predictions in mycobacteria?

Tuberculosis

Volumn 92, Issue 4, 2012, Pages 291-292

  Leversen, Nils Anders ^a   Wiker, Harald G ^a,b  

^a UNIVERSITY OF BERGEN   (Norway)

^b HAUKELAND UNIVERSITY HOSPITAL   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CELL PROTEIN; MEMBRANE PROTEIN; SIGNAL PEPTIDASE I; SIGNAL PEPTIDE;

ALGORITHM; AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTIFICIAL NEURAL NETWORK; HIDDEN MARKOV MODEL; LETTER; MYCOBACTERIUM; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CLEAVAGE; PROTEIN DOMAIN; PROTEOMICS; TRANSLATION INITIATION; VALIDITY;

ALGORITHMS; BACTERIAL PROTEINS; MYCOBACTERIUM; PROTEIN SORTING SIGNALS;

EID: 84861998702     PISSN: 14729792     EISSN: 1873281X     Source Type: Journal    
DOI: 10.1016/j.tube.2012.03.002     Document Type: Letter

References (9)

1. T.N. Petersen, S. Brunak, G. Heijne von, and H. Nielsen SignalP 4.0: discriminating signal peptides from transmembrane regions Nat Methods 8 2011 785 786
2. V. Jarlier, and H. Nikaido Mycobacterial cell-wall - structure and role in natural-resistance to antibiotics FEMS Microbiol Lett 123 1994 11 18
3. D.E. Minnikin, L. Kremer, L.G. Dover, and G.S. Besra The methyl-branched fortifications of Mycobacterium tuberculosis Chem Biol 9 2002 545 553
4. C. Hoffmann, A. Leis, M. Niederweis, J.M. Plitzko, and H. Engelhardt Disclosure of the mycobacterial outer membrane: cryo-electron tomography and vitreous sections reveal the lipid bilayer structure PNAS 105 2008 3963 3967
5. B. Zuber, M. Chami, C. Houssin, J. Dubochet, G. Griffiths, and M. Daffe Direct visualization of the outer membrane of mycobacteria and corynebacteria in their native state J Bacteriol 190 2008 5672 5680
6. G.A. de Souza, N.A. Leversen, H. Målen, and H.G. Wiker Bacterial proteins with cleaved or uncleaved signal peptides of the general secretory pathway J Proteomics 75 2011 502 510
7. N.A. Leversen, G.A. de Souza, H. Målen, S. Prasad, I. Jonassen, and H.G. Wiker Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods Microbiology 155 2009 2375 2383
8. G.A. de Souza, M.O. Arntzen, S. Fortuin, A.C. Schurch, H. Målen, and C.R.E. McEvoy Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database Mol Cell Proteomics 2011 1 10 10.0.1074/mcp.M110.002527
9. D.S. Kelkar, D. Kumar, P. Kumar, L. Balakrishnan, B. Muthusamy, and A.K. Yadav Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry Mol Cell Proteomics 10 12 2011 M111