Environmental factors influencing molinate biodegradation by a two-member mixed culture in rice paddy field floodwater

International Biodeterioration and Biodegradation

Volumn 72, Issue , 2012, Pages 52-58

  Barreiros, Luisa ^a,b   Peres, Joana ^a   Azevedo, Nuno F ^a   Manaia, Célia M ^b   Nunes, Olga C ^a  

^a UNIVERSITY OF PORTO   (Portugal)

^b UNIVERSIDADE CATÓLICA PORTUGUESA   (Portugal)

Author keywords

Bioaugmentation; Biotic and abiotic factors; FISH; Floodwater; Herbicide degradation; Kinetic parameters

Indexed keywords

ABIOTIC FACTORS; BENTAZONE; BIO-AUGMENTATION; CONTAMINATED ENVIRONMENT; CULTURE MEDIA; DEGRADATION RATE; ENVIRONMENTAL CONDITIONS; ENVIRONMENTAL FACTORS; ENVIRONMENTAL WATER; EXPONENTIAL GROWTH; FLOODWATER; FLUORESCENT IN SITU HYBRIDIZATION; MICROBIOTAS; MIXED CULTURES; MOLINATE; NATURAL WATERS; PADDY FIELDS; PROPANIL; PSEUDOMONAS CHLORORAPHIS; PULL UP; RICE PADDY;

BIOREMEDIATION; DEGRADATION; FISH; HERBICIDES; KINETIC PARAMETERS; MICROBIOLOGY; MINERALOGY; WEED CONTROL;

BIODEGRADATION;

BACTERIUM; BIOASSAY; BIODEGRADATION; BIOREMEDIATION; ENVIRONMENTAL CONDITIONS; ENVIRONMENTAL FACTOR; HERBICIDE; MINERALIZATION; PADDY FIELD; POLLUTION EFFECT; REACTION KINETICS; RICE;

GULOSIBACTER MOLINATIVORAX; PSEUDOMONAS CHLORORAPHIS;

EID: 84861973594     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2012.05.003     Document Type: Article

References (55)

1. Aislabie J., Lloyd-Jones G. A review of bacterial-degradation of pesticides. Australian Journal of Soil Research 1995, 33:925-942.
2. Alexander M. Biodegradation and Bioremediation 1999, Academic Press, New York. second ed.
3. Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews 1995, 59:143-169.
4. Arshad M., Hussain S., Saleem M. Optimization of environmental parameters for biodegradation of alpha and beta endosulfan in soil slurry by Pseudomonas aeruginosa. Journal of Applied Microbiology 2008, 104:364-370.
5. Barreiros L., Nogales B., Manaia C.M., Silva-Ferreira A.C., Pieper D.H., Reis M.A., Nunes O.C. A novel pathway for mineralization of the thiocarbamate herbicide molinate by a defined bacterial mixed culture. Environmental Microbiology 2003, 5:944-953.
6. Barreiros L., Fernandes A., Silva-Ferreira A.C., Pereira H., Bastos M.M.S.M., Manaia C.M., Nunes O.C. New insights into a bacterial metabolic and detoxifying association responsible for the mineralization of the thiocarbamate herbicide molinate. Microbiology 2008, 154:1038-1046.
7. Barreiros L., Manaia C.M., Nunes O.C. Bacterial diversity and bioaugmentation in floodwater of a paddy field in the presence of the herbicide molinate. Biodegradation 2011, 22:445-461.
8. Benimeli C.S., González A.J., Chaile A.P., Amoroso M.J. Temperature and pH effect on lindane removal by Streptomyces sp. M7 in soil extract. Journal of Basic Microbiology 2007, 47:468-473.
9. Benimeli C.S., Fuentes M.S., Abate C.M., Amoroso M.J. Bioremediation of lindane-contaminated soil by Streptomyces sp. M7 and its effects on Zea mays growth. International Biodeterioration and Biodegradation 2008, 61:233-239.
10. Block R., Stroo H., Swett G.H. Bioremediation - why doesn't it work sometimes?. Chemical Engineering Progress 1993, 89:44-50.
11. Bondarenko S., Gan J., Haver D.L., Kabashima J.N. Persistence of selected organophosphate and carbamate insecticides in waters from a coastal watershed. Environmental Toxicology and Chemistry 2004, 23:2649-2654.
12. Bouchez T., Patureau D., Dabert P., Juretschko S., Dore J., Delgenes P., Molleta R., Wagner M. Ecological study of a bioaugmentation failure. Environmental Microbiology 2000, 2:179-190.
13. Caracciolo A.B., Giuliano G., Di Corcia A., Crescenzi C., Silvestri C. Microbial degradation of terbuthylazine in surface soil and subsoil at two different temperatures. Bulletin of Environmental Contamination and Toxicology 2001, 67:815-820.
14. Castro M., Silva-Ferreira A.C., Manaia C.M., Nunes O.C. A case study of molinate application in a Portuguese rice field: herbicide dissipation and proposal of a clean-up methodology. Chemosphere 2005, 59:1059-1065.
15. Cerejeira M.J., Viana P., Batista S., Pereira T., Silva E., Valério M.J., Silva A., Ferreira M., Silva-Fernandes A.M. Pesticides in Portuguese surface and ground waters. Water Research 2003, 37:1055-1063.
16. Chapalamadugu S., Chaudhry G. Microbiological and biotechnological aspects of metabolism of carbamates and organophosphates. Critical Reviews in Biotechnology 1992, 12:357-389.
17. Claver A., Ormad P., Rodríguez L., Ovelleiro J.L. Study of the presence of pesticides in surface waters in the Ebro river basin (Spain). Chemosphere 2006, 64:1437-1443.
18. Correia P., Boaventura R.A., Reis M.A., Nunes O.C. Effect of operating parameters on molinate biodegradation. Water Research 2006, 40:331-340.
19. Das K., Mukherjee A.K. Crude petroleum-oil biodegradation efficiency of Bacillus subtilis and Pseudomonas aeruginosa strains isolated from a petroleum-oil contaminated soil from North-East India. Bioresource Technology 2007, 98:1339-1345.
20. Diaz E. Microbial Biodegradation: Genomics and Molecular Biology 2008, Caister Academic Press, Norfolk, UK. first ed.
21. T molinate hydrolase, a novel cobalt-dependent amidohydrolase. Journal of Bacteriology 2011, 193:5810-5816.
22. Dunn I.J., Heinzle E., Ingham J., Prenosil J.E. Biological Reaction Engineering 1992, Wiley-VCH, Weinheim, Germany.
23. Gavrilescu M. Fate of pesticides in the environment and its bioremediation. Engineering in Life Sciences 2005, 5:497-526.
24. Ghadiri H., Rose C.W., Connell D.W. Degradation of organochlorine pesticides in soils under controlled environment and outdoor conditions. Journal of Environmental Management 1995, 43:141-151.
25. Hong Q., Zhang Z., Hong Y., Li S. A microcosm study on bioremediation of fenitrothion-contaminated soil using Burkholderia sp. FDS-1. International Biodeterioration and Biodegradation 2007, 59:55-61.
26. Jain R.K., Kapur M., Labana S., Lal B., Sarma P.M., Bhattacharya D., Thakur I.S. Microbial diversity: application of microorganisms for the biodegradation of xenobiotics. Current Science 2005, 89:101-112.
27. Karpouzas D.G., Walker A. Factors influencing the ability of Pseudomonas putida strains epI and II to degrade the organophosphate ethoprophos. Journal of Applied Microbiology 2000, 89:40-48.
28. Kuivila K.M., Jennings B.E. Input, flux, and persistence of six select pesticides in San Francisco Bay. International Journal of Environmental Analytical Chemistry 2007, 87:897-911.
29. Kuster M., de Alda M.J.L., Barata C., Raldúa D., Barceló D. Analysis of 17 polar to semi-polar pesticides in the Ebro river delta during the main growing season of rice by automated on-line solid-phase extraction-liquid chromatography-tandem mass spectrometry. Talanta 2008, 75:390-401.
30. Labana S., Singh O.V., Basu A., Pandey G., Jain R.K. A microcosm study on bioremediation of p-nitrophenol-contaminated soil using Arthrobacter protophormiae RKJ100. Applied Microbiology and Biotechnology 2005, 68:417-424.
31. Leahy J.G., Colwell R.R. Microbial degradation of hydrocarbons in the environment. Microbiological Reviews 1990, 54:305-315.
32. Levene H. Robust tests for equality of variances. Contributions to Probability and Statistics 1960, 278-292. Stanford University Press, Stanford, California, USA. I. Olkin, G. Ghurye, W. Hoeffding, W.G. Madow, H.B. Mann (Eds.).
33. Lima D., Viana P., André S., Chelinho S., Costa C., Ribeiro R., Sousa J.P., Fialho A.M., Viegas C.A. Evaluating a bioremediation tool for atrazine contaminated soils in open soil microcosms: the effectiveness of bioaugmentation and biostimulation approaches. Chemosphere 2009, 74:187-192.
34. Manaia C.M., Nogales B., Weiss N., Nunes O.C. Gulosibacter molinativorax gen. nov., sp. nov., a molinate degrading bacterium, and classification of " Brevibacterium helvolum" DSM 20419 as Pseudoclavibacter helvolus gen. nov., sp. nov. International Journal of Systematic and Evolutionary Microbiology 2004, 54:783-789.
35. Manz W., Amann R., Ludwig W., Wagner M., Schleifer K.H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of proteobacteria: problems and solutions. Systematic and Applied Microbiology 1992, 15:593-600.
36. MATLAB Version 7.10.0.499, Computer Software 2010, The MathWorks Inc., Natick, Massachusetts.
37. Mohanty G., Mukherji S. Biodegradation rate of diesel range n-alkanes by bacterial cultures Exiguobacterium aurantiacum and Burkholderia cepacia. International Biodeterioration and Biodegradation 2008, 61:240-250.
38. Morra M.J. Bioremediation in soil: influence of soil properties on organic contaminants and bacteria. Bioremediation - Principles and Applications 1996, 35-60. Cambridge University Press, Cambridge, UK. R.L. Crawford, D.L. Crawford (Eds.).
39. Nagy I., Schoofs G., Compernolle F., Proost P., Vanderleyden J., De Mot R. Degradation of the thiocarbamate herbicide EPTC (S-Ethyl diproylcarbamothioate) and biosafening by Rhodococcus sp. strain NI86/21 involve an inducible cytochrome P-450 system and aldehyde dehydrogenase. Journal of Bacteriology 1995, 177:676-687.
40. Nakayama N., Okumura M., Inoue K., Asakawa S., Kimura M. Seasonal variations in the abundance of virus-like particles and bacteria in the floodwater of a Japanese paddy field. Soil Science and Plant Nutrition 2007, 53:420-429.
41. Okabe A., Oike H., Toyota K., Kimura M. Comparison of phospholipid fatty acid composition in floodwater and plow layer soil during the rice cultivation period in a Japanese paddy field. Soil Science and Plant Nutrition 2000, 46:893-904.
42. Palleroni N.J. Family I. Pseudomonadaceae. Bergey's Manual of Systematic Bacteriology 1984, 141-199. Williams & Wilkins, USA. N.R. Krieg, J.G. Holt (Eds.).
43. R: a Language and Environment for Statistical Computing 2010, R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria, Online at URL:. http://www.R-project.org/.
44. Ross S.M. Introduction to Probability and Statistics for Engineers and Scientists 2004, Elsevier Academic Press, London, UK.
45. Shapiro S.S., Wilk M.B. An analysis of variance test for normality (complete samples). Biometrika 1965, 52:591-611.
46. Siddique T., Okeke B.C., Arshad M., Frakenberger W.T. Temperature and pH effects on biodegradation of hexachlorocyclohexane isomers in water and a soil slurry. Journal of Agricultural and Food Chemistry 2002, 50:5070-5076.
47. Silva E., Fialho A.M., Sá-Correia I., Burns R.G., Shaw L.J. Combined bioaugmentation and biostimulation to cleanup soil contaminated with high concentrations of atrazine. Environmental Science and Technology 2004, 38:632-637.
48. Singer A.C., Van der Gast C.J., Thompson I.P. Perspectives and vision for strain selection in bioaugmentation. Trends in Biotechnology 2005, 23:74-77.
49. Singh A., Ward O.P. Biotechnology and bioremediation - an overview. Biodegradation and Bioremediation 2004, vol. 2:1-18. Springer Verlag, Berlin, Heidelberg. A. Singh, O.P. Ward (Eds.).
50. Singh D.K. Biodegradation and bioremediation of pesticide in soil: concept, method and recent developments. Indian Journal of Microbiology 2008, 48:35-40.
51. Steinle P., Thalmann P., Höhener P., Hanselmann K.W., Stucki G. Effect of environmental factors on the degradation of 2,6-dichlorophenol in soil. Environmental Science and Technology 2000, 34:771-775.
52. Sudo M., Okubo T., Kaneki R. Paddy herbicide inputs in the entire river inflow reaching Lake Biwa, Japan. Limnology 2005, 6:91-99.
53. Supaphol S., Panichsakpatana S., Trakulnaleamsai S., Tungkananuruk N., Roughjanajirapa P., O'Donnell A.G. The selection of mixed microbial inocula in environmental biotechnology: example using petroleum contaminated tropical soils. Journal of Microbiological Methods 2006, 65:432-441.
54. Wackett L.P., Hershberger C.D. Metabolic logic and pathway maps. Biocatalysis and Biodegradation: Microbial Transformation of Organic Compounds 2001, 135-155. ASM Press, Washington. L.P. Wackett, C.D. Hershberger (Eds.).
55. Wenderoth D.F., Rosenbrock P., Abraham W.-R., Pieper D.H., Höfle M.G. Bacterial community dynamics during biostimulation and bioaugmentation experiments aiming at chlorobenzene degradation in groundwater. Microbial Ecology 2003, 46:161-176.