Incorporation of 13C-labelled rice rhizodeposition carbon into soil microbial communities under different water status

Soil Biology and Biochemistry

Volumn 53, Issue , 2012, Pages 72-77

  Yao, Huaiying ^a,b   Thornton, Barry ^c   Paterson, Eric ^c  

^a ZHEJIANG UNIVERSITY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^c SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

Paddy soil; PLFA; Rhizodeposition; Steady state labelling; Water status

Indexed keywords

PADDY SOILS; PLFA; RHIZODEPOSITION; STEADY STATE; WATER STATUS;

BACTERIA; FUNGI; LAKES; PHOSPHOLIPIDS; SOIL MOISTURE; WETLANDS;

CARBON;

CARBON ISOTOPE; COMMUNITY STRUCTURE; FATTY ACID; IRRIGATION; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PADDY FIELD; PHOSPHOLIPID; PHOTOSYNTHESIS; RICE; SOIL MICROORGANISM; SOIL ORGANIC MATTER; SOIL WATER; SUBSTRATE; WATERLOGGING; WETLAND;

BACTERIA (MICROORGANISMS); FUNGI; NEGIBACTERIA; POSIBACTERIA;

EID: 84861970027     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2012.05.006     Document Type: Article

References (42)

1. 2O evolution and PLFA composition. Soil Biology & Biochemistry 2009, 41:1726-1733.
2. 13 along a topoedaphic gradient in a subtropical savanna parkland. Oecologia 2008, 156:479-489.
3. Bapiri A., Bååth E., Rousk J. Drying-rewetting cycles affect fungal and bacterial growth differently in an arable soil. Microbial Ecology 2010, 60:419-428.
4. Bligh E.G., Dyer W.J. A rapid method of total lipid extraction and purification. Canadian Journal of Biochemistry and Physiology 1959, 37:911-917.
5. Boschker H.T.S., de Brouwer J.F.C., Cappenberg T.E. The contribution of macrophyte-derived organic matter to microbial biomass in salt marsh sediments: stable carbon-isotope analysis of microbial biomarkers. Limnology and Oceanography 1999, 44:309-319.
6. Butler J.L., Williams M.A., Bottomley P.J., Myrold D.D. Microbial community dynamics associated with rhizosphere carbon flow. Applied and Environmental Microbiology 2003, 69:6793-6800.
7. Cai W.M., Yao H.Y., Feng W.L., Jin Q.L., Liu Y.Y., Li N.Y., Zheng Z. Microbial community structure of casing oil during mushroom (Agaricus bisporus ) growth. Pedosphere 2009, 19:446-452.
8. Chen M.M., Zhu Y.G., Su Y.H., Chen B.D., Fu B.J., Marschner P. Effects of soil moisture and plant interactions on the soils microbial community structure. European Journal of Soil Biology 2007, 43:31-38.
9. De Visser R., Vianden H., Schnyder H. Kinetics and relative significance of remobilized and current C and N incorporation in leaf and root growth zones of Lolium perenne after defoliation: assessment by C-13 and N-15 steady-state labeling. Plant Cell and Environment 1997, 20:37-46.
10. 2. Proceedings of the National Academy of Sciences of the United States of America 2010, vol. 107:10938-10942.
11. 2. Plant and Soil 2009, 323:21-29.
12. Feng Y., Motta A.C., Reeves D.W., Burmester C.H., van Santen E., Osborne J.A. Soil microbial communities under conventional till and no-till continuous cotton systems. Soil Biology & Biochemistry 2003, 35:1693-1703.
13. Frostegård Å., Tunlid A., Bååth E. Phospholipid fatty acid composition, biomass and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Applied and Environmental Microbiology 1993, 59:3605-3617.
14. Frostegård Å., Tunlid A., Bååth E. Use and misuse of PLFA measurements in soils. Soil Biology & Biochemistry 2011, 43:1621-1625.
15. Garland J.L. Patterns of potential C source utilisation by rhizosphere communities. Soil Biology & Biochemistry 1996, 28:223-230.
16. Gordon H., Haygarth P.M., Bardgett R.D. Drying and rewetting effects on soil microbial community composition and nutrient leaching. Soil Biology & Biochemistry 2008, 40:302-311.
17. Henson J.M., McInerney M.J., Beaty P.S., Nickels J., White D.C. Phospholipid fatty acid composition of the syntrophic anaerobic bacterium Syntrophomonaswolfei. Applied and Environmental Microbiology 1988, 54:1570-1574.
18. Högberg M.N., Briones M.J.I., Keel S.G., Metcalfe D.B., Campbell C., Midwood A.J., Thornton B., Hurry V., Linder S., Näsholm T., Högberg P. Quantification of effects of season and nitrogen supply on tree below-ground carbon transfer to ectomycorrhizal fungi and other soil organisms in a boreal pine forest. New Phytologist 2010, 187:485-493.
19. Huygens D., Schouppe J., Roobroeck D., Alvarez M., Balocchi O., Valenzuela E., Pinochet D., Boeckx P. Drying-rewetting effects on N cycling in grassland soils of varying microbial community composition and management intensity in south central Chile. Applied Soil Ecology 2011, 48:270-279.
20. Johnson D.A., Aguirre L. Effect of water on morphological development in seedlings of 3 range grasses - root branching patterns. Journal of Range Management 1991, 44:355-360.
21. Kimura M., Asakama S. Comparison of community structures of microbiota at main habitats in rice field ecosystems based on phospholipid fatty acid analysis. Biology and Fertility of Soils 2006, 43:20-29.
22. Klamer M., Bååth E. Estimation of conversion factors for fungal biomass determination in compost using ergosterol and PLFA 18:2ω6, 9. Soil Biology & Biochemistry 2004, 36:57-65.
23. Liu Y.Y., Yao H.Y., Huang C.Y. Assessing the effect of air-drying and storage on microbial biomass and community structure in paddy soils. Plant and Soil 2009, 317:213-221.
24. Lu Y.H., Murase J., Watanabe A., Sugimoto A., Kimura M. Linking microbial community dynamics to rhizosphere carbon flow in a wetland rice soil. FEMS Microbiology Ecology 2004, 48:179-186.
25. Macdonald L.M., Paterson E., Dawson L.A., McDonald A.J.S. Short-term effects of defoliation on the soil microbial community associated with two contrasting Lolium perenne cultivars. Soil Biology & Biochemistry 2004, 36:489-498.
26. Mazumber R., Pinkart H.C., Alban P.S., Phelps T.J., Benoit R.E. Low-substrate regulated microaerophilic behavior as a stress response of aquatic and soil bacteria. Current Microbiology 2000, 41:79-83.
27. 13C-labeled rice-straw-derived carbon into microbial communities in submerged rice field soil and percolating water. Soil Biology & Biochemistry 2006, 38:3483-3491.
28. Nguyen C. Rhizodeposition of organic C by plants: mechanisms and controls. Agronomie 2003, 23:375-396.
29. Paterson E., Gebbing T., Abel C., Sim A., Telfer G. Rhizodeposition shapes rhizosphere microbial community structure in organic soil. New Phytologist 2007, 173:600-610.
30. Paterson E., Neilson R., Midwood A.J., Osborne S.M., Sim A., Thornton B., Millard P. Altered food web structure and C-flux pathways associated with mineralisation of organic amendments to agricultural soil. Applied Soil Ecology 2011, 48:107-116.
31. Paterson E., Osler G., Dawson L.A., Gebbing T., Sim A., Ord B. Labile and recalcitrant plant fractions are utilized by distinct microbial communities in soil: independent of the presence of roots and mycorrhizal fungi. Soil Biology & Biochemistry 2008, 40:1103-1113.
32. Petersen S.O., Frohne P.S., Kennedy A.C. Dynamics of a soil microbial community under spring wheat. Soil Science Society of America Journal 2002, 66:826-833.
33. 13C labelling. Physiologia Plantarum 2004, 120:434-441.
34. Thornton B., Zhang Z., Mayes R.W., Högberg M.N., Midwood A.J. Can gas chromatography combustion isotope ratio mass spectrometry be used to quantify organic compound abundance?. Rapid Communications in Mass Spectrometry 2011, 25:2433-2438.
35. Treonis A.M., Olstle N.J., Stott A.W., Primrose R., Grayston S.J., Inseson P. Identification of groups of metabolically active rhizosphere microorganisms by stable isotope probing of PLFAs. Soil Biology & Biochemistry 2004, 36:533-537.
36. Tunlid A., White D.C. Biochemical analysis of biomass, community structure, nutritional status and metabolic activity of microbial communities in soil. Soil Biochemistry 1992, vol. 7:229-262. Marcel Dekker, New York.
37. Williams M.A. Response of microbial communities to water stress in irrigated and drought-prone tallgrass prairie soils. Soil Biology & Biochemistry 2007, 36:533-537.
38. 13C labeling to assess carbon partitioning in transgenic and nontransgenic (parental) rice and their rhizosphere soil microbial communities. FEMS Microbiology Ecology 2009, 67:93-102.
39. Xue D., Yao H.Y., Ge D.Y., Huang C.Y. Soil microbial community structure in diverse land use systems: a comparative study using BIOLOG, DGGE and PLFA analyses. Pedosphere 2008, 18:653-663.
40. Yao H., He Z., Wilson M.J., Campbell C.D. Microbial community structure in a sequence of soil with increasing fertility and changing land use. Microbial Ecology 2000, 40:223-237.
41. Zelles L. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterization of microbial communities in soil: a review. Biology and Fertility of Soils 1999, 29:111-129.
42. Zou J.W., Huang Y., Jiang J.Y., Zheng X.H., Sass R.L. A 3-year field measurement of methane and nitrous oxide emissions from rice paddies in China: effects of water regime, crop residue, and fertilizer application. Global Biogeochemical Cycles 2005, 19:1-9.