Measuring distance from single spike feedback signals in molecular communication

IEEE Transactions on Signal Processing

Volumn 60, Issue 7, 2012, Pages 3576-3587

  Moore, Michael J ^a   Nakano, Tadashi ^a   Enomoto, Akihiro ^b   Suda, Tatsuya ^c  

^a OSAKA UNIVERSITY   (Japan)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c University Netgroup Inc   (United States)

Author keywords

Bionanomachine; distance measurement protocol; molecular communication; single spike signal

Indexed keywords

BIONANOMACHINE; COMMUNICATION MECHANISMS; FEEDBACK SIGNAL; FUTURE APPLICATIONS; LOCATION BASED; MEASURE DISTANCE; MEASURING DISTANCES; MICRO-SCALES; MOLECULAR COMMUNICATION; ROUND-TRIP-TIME; SHORT TIME INTERVALS; SIGNAL ATTENUATION; SINGLE SPIKE SIGNAL;

BIOLOGICAL SYSTEMS; MOLECULES; SIGNAL PROCESSING;

COMMUNICATION;

EID: 84861940994     PISSN: 1053587X     EISSN: None     Source Type: Journal    
DOI: 10.1109/TSP.2012.2193571     Document Type: Article

References (27)

1. M. Moore, A. Enomoto, T. Suda, T. Nakano, and Y. Okaie., Molecular Communication: New Paradigm for Communication among Nano-scale Biological Machines, in The Handbook of Computer Networks. New York: Wiley , 2007, vol. 3, pp. 1034-1054.
2. I. F. Akyildiz, F. Brunetti, and C. Blazquez, Nanonetworks: A new communication paradigm, Comput. Netw. J. (Elsevier), vol. 52, pp. 2260-2279, 2008.
3. B. Atakan, O. Akan, and S. Balasubramaniam, Body area nanonetworks with molecular communications in nanomedicine, IEEE Commun. Mag., vol. 50, no. 1, pp. 28-34, 2012.
4. K. E. Drexler, Building molecular machine systems, Nanotechnol., vol. 17, pp. 5-7, 1999.
5. C. Mavroidis, A. Dubey, andM. L. Yarmush, Molecular machines, Ann. Rev. Biomed. Eng., vol. 6, pp. 363-395, 2004.
6. S. Hiyama,Y.Moritani, T. Suda,R. Egashira, A. Enomoto,M.Moore, and T. Nakano, Molecular communication, in Proc. Tech. NSTI Nantechnol. Conf. Trade Show, 2005, vol. 3, pp. 391-394.
7. T. D. Schneider, Theory of molecular machines. information channel capacity of molecular machines, J. Theoret. Biol., vol. 148, no. 1, pp. 83-123, 1991.
8. M. Pierobon and I. F. Akyildiz, Diffusion-based noise analysis for molecular communication in nanonetworks, IEEE Trans. Signal Process., vol. 59, no. 6, pp. 2532-2547, 2011.
9. M. Moore, T. Suda, and K. Oiwa, Molecular communication: Modeling noise effects on information rate, IEEE Trans. Nanobiosci., vol. 8, no. 2, pp. 169-180, 2009.
10. M. Pierobon and I. F. Akyildiz, A physical end-To-end model for molecular communication in nanonetworks, IEEE J. Sel. Areas Commun., vol. 28, no. 4, pp. 602-611, 2010.
11. A. W. Eckford, N. Farsad, S. Hiyama, and Y.Moritani, Microchannel molecular communication with nanoscale carriers: Brownian motion versus active transport, in Proc. IEEE Int. Conf. Nanotechnol., 2010, pp. 854-858.
12. B. Atakan and O. B. Akan, An information theoretical approach for molecular communication, in Proc. 2nd Int. Conf. Bio-Inspired Models of Netw., Inf., Comput. Syst. (BIONETICS), 2007, pp. 33-40.
13. N. Farsad, A. W. Eckford, S. Hiyama, and Y. Moritani, Information rates of active propagation in microchannel molecular communication, in Proc. 5th Int. Conf. Bio-Inspired Models of Netw., Inf., Comput. Syst. (BIONETICS), 2010.
14. T. Nakano and J. Q. Liu, Design and analysis of molecular relay channels: An information theoretic approach, IEEE Trans. NanoBiosci., vol. 9, no. 3, pp. 213-221, 2010.
15. A. Eckford, Achievable information rates for molecular communication with distinct molecules, in Proc.Workshop on Comput. Commun. Biological Systems: Theory Appl., 2007, pp. 313-315.
16. T. Nakano and M. Moore, In-sequence molecule delivery over an aqueous medium, Nano Commun. Netw., vol. 1, no. 3, pp. 181-188, 2010.
17. B. Atakan and O. B. Akan, Deterministic capacity of information flow in molecular nanonetworks, Nano Commun. Netw., vol. 1, no. 1, pp. 31-42, 2010.
18. E. Gul, B. Atakan, and O. B. Akan, Nanons: A nanoscale network simulator framework for molecular communications, Nano Commun. Netw., vol. 1, no. 2, pp. 138-156, 2010.
19. F. Tostevin, P. R. ten Wolde, and M. Howard, Fundamental limits to position determination by concentration gradients, Plos Computat. Biol., vol. 3, no. 4, pp. 763-771, 2011.
20. J. Hightower and G. Borriello, Location Sensing Techniques Univ. Wash. Tech. Rep., 2001, vol. UW-CSE-01-07-01, pp. 1-8.
21. M. J. Moore, S. Nakano, A. Enomoto, and T. Suda, Measuring distance with molecular communication feedback protocols, in Proc. Bio-Inspired Models of Netw., Inf., Comput. Syst. (BIONETICS), 2010.
22. M. Haller, C. Heinemann, R. H. Chow, R. Heidelberger, and E. Nehe, Comparison of secretory responses as measured by membrane, Biophys. J., vol. 74, pp. 2100-2113, 1998.
23. E.Mosharov and E. Sulzer, Analysis of exocytotic events recorded by amprometry, Nature Method, vol. 2, no. 9, pp. 651-658, 2005.
24. H. C. Berg, RandomWalks in Biology. Princeton,NJ: PrincetonUniv. Press, 1993.
25. U. Alon, An Introduction to Systems Biology: Design Principles of Biological Circuits. Boca Raton, FL: Chapman and Hall/CRC, 2007.
26. D. Bruns and R. Jahn, Real-Time measurement of transmitter release from single synaptic vesicles, Letters to Nature, vol. 377, pp. 62-65, 2011.
27. M. E. Grachevanw and J. D. Gunton, Intercellular communication via intracellular calcium oscillations, J. Theor. Biol., vol. 221, pp. 513-518, 2003.