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Volumn 13, Issue 1, 2012, Pages

Comparative proteome analysis of Saccharomyces cerevisiae: A global overview of in vivo targets of the yeast activator protein 1

Author keywords

Proteome; Saccharomyces cerevisiae; Stress response; Transcription factor; Yap1

Indexed keywords

CHAPERONE; FUNGAL PROTEIN; HEAT SHOCK PROTEIN; UNCLASSIFIED DRUG; YEAST ACTIVATOR PROTEIN;

EID: 84861921082     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-230     Document Type: Article
Times cited : (20)

References (44)
  • 1
    • 0033034316 scopus 로고    scopus 로고
    • AP-1 transcription factors in yeast
    • 10.1016/S0959-437X(99)80008-2, 10072349
    • Toone WM, Jones N. AP-1 transcription factors in yeast. Curr Opin Genet Dev 1999, 9:55-61. 10.1016/S0959-437X(99)80008-2, 10072349.
    • (1999) Curr Opin Genet Dev , vol.9 , pp. 55-61
    • Toone, W.M.1    Jones, N.2
  • 2
    • 0024638464 scopus 로고
    • Yeast Yap1 encodes a novel form of the jun family of transcriptional activator proteins
    • 10.1101/gad.3.3.283, 2542125
    • Moye-Rowley WS, Harshman KD, Parker CS. Yeast Yap1 encodes a novel form of the jun family of transcriptional activator proteins. Genes Dev 1989, 3:283-292. 10.1101/gad.3.3.283, 2542125.
    • (1989) Genes Dev , vol.3 , pp. 283-292
    • Moye-Rowley, W.S.1    Harshman, K.D.2    Parker, C.S.3
  • 3
    • 80053215531 scopus 로고    scopus 로고
    • Differential oxidant tolerance determined by the key transcription factor Yap1 is controlled by levels of the Yap1-binding protein, Ybp1
    • 10.1074/jbc.M111.251298, 21844193
    • Gulshan K, Lee SS, Moye-Rowley WS. Differential oxidant tolerance determined by the key transcription factor Yap1 is controlled by levels of the Yap1-binding protein, Ybp1. J Biol Chem 2011, 286:34071-34081. 10.1074/jbc.M111.251298, 21844193.
    • (2011) J Biol Chem , vol.286 , pp. 34071-34081
    • Gulshan, K.1    Lee, S.S.2    Moye-Rowley, W.S.3
  • 4
    • 0026560388 scopus 로고
    • The PAR1 (YAP1/SNQ3) gene of Saccharomyces cerevisiae, a c-jun homologue, is involved in oxygen metabolism
    • 10.1007/BF00351681, 1525853
    • Schnell N, Krems B, Entian KD. The PAR1 (YAP1/SNQ3) gene of Saccharomyces cerevisiae, a c-jun homologue, is involved in oxygen metabolism. Curr Genet 1992, 21:269-273. 10.1007/BF00351681, 1525853.
    • (1992) Curr Genet , vol.21 , pp. 269-273
    • Schnell, N.1    Krems, B.2    Entian, K.D.3
  • 5
    • 0030942294 scopus 로고    scopus 로고
    • Regulation of yAP-1 nuclear localization in response to oxidative stress
    • 10.1093/emboj/16.7.1710, 1169774, 9130715
    • Kuge S, Jones N, Nomoto A. Regulation of yAP-1 nuclear localization in response to oxidative stress. EMBO J 1997, 16:1710-1720. 10.1093/emboj/16.7.1710, 1169774, 9130715.
    • (1997) EMBO J , vol.16 , pp. 1710-1720
    • Kuge, S.1    Jones, N.2    Nomoto, A.3
  • 6
    • 0030016469 scopus 로고    scopus 로고
    • Yeast glutathione reductase is required for protection against oxidative stress and is a target for yAP-1 transcriptional regulation
    • 10.1046/j.1365-2958.1996.6351340.x, 8843443
    • Grant CM, Collinson LP, Roe JH, Dawes IW. Yeast glutathione reductase is required for protection against oxidative stress and is a target for yAP-1 transcriptional regulation. Mol Microbiol 1996, 21:171-179. 10.1046/j.1365-2958.1996.6351340.x, 8843443.
    • (1996) Mol Microbiol , vol.21 , pp. 171-179
    • Grant, C.M.1    Collinson, L.P.2    Roe, J.H.3    Dawes, I.W.4
  • 7
    • 0028168801 scopus 로고
    • GSH1, which encodes γ-glutamylcysteine synthetase, is a target gene for yAP-1 transcriptional regulation
    • 10.1128/MCB.14.9.5832, 359109, 7915005
    • Wu A, Moye-Rowley WS. GSH1, which encodes γ-glutamylcysteine synthetase, is a target gene for yAP-1 transcriptional regulation. Mol Cell Biol 1994, 14:5832-5839. 10.1128/MCB.14.9.5832, 359109, 7915005.
    • (1994) Mol Cell Biol , vol.14 , pp. 5832-5839
    • Wu, A.1    Moye-Rowley, W.S.2
  • 8
    • 0025907960 scopus 로고
    • The SNQ3 gene of Saccharomyces cerevisiae confers hyper-resistance to several functionally unrelated chemicals
    • 10.1007/BF00362080, 2036682
    • Hertle K, Haase E, Brendel M. The SNQ3 gene of Saccharomyces cerevisiae confers hyper-resistance to several functionally unrelated chemicals. Curr Genet 1991, 19:1-4. 10.1007/BF00362080, 2036682.
    • (1991) Curr Genet , vol.19 , pp. 1-4
    • Hertle, K.1    Haase, E.2    Brendel, M.3
  • 9
    • 0025788815 scopus 로고
    • Identification and characterization of a Saccharomyces cerevisiae gene (PAR1) conferring resistance to iron chelators
    • 10.1111/j.1432-1033.1991.tb16209.x, 1889413
    • Schnell N, Entian KD. Identification and characterization of a Saccharomyces cerevisiae gene (PAR1) conferring resistance to iron chelators. Eur J Biochem 1991, 200:487-493. 10.1111/j.1432-1033.1991.tb16209.x, 1889413.
    • (1991) Eur J Biochem , vol.200 , pp. 487-493
    • Schnell, N.1    Entian, K.D.2
  • 10
    • 38349048493 scopus 로고    scopus 로고
    • Yeast adaptation to mancozeb involves the up-regulation of FLR1 under the coordinate control of Yap1, Rpn4, Pdr3, and Yrr1
    • Teixeira MC, Dias PJ, Simoes T, Sa-Correia I. Yeast adaptation to mancozeb involves the up-regulation of FLR1 under the coordinate control of Yap1, Rpn4, Pdr3, and Yrr1. Biochem Bioph Res Commun 2008, 367:249-255.
    • (2008) Biochem Bioph Res Commun , vol.367 , pp. 249-255
    • Teixeira, M.C.1    Dias, P.J.2    Simoes, T.3    Sa-Correia, I.4
  • 11
    • 0031039492 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae exhibits a yAP-1 mediated adaptive response to malondialdehyde
    • 178803, 9023189
    • Turton HE, Dawes IW, Grant CM. Saccharomyces cerevisiae exhibits a yAP-1 mediated adaptive response to malondialdehyde. J Bacteriol 1997, 179:1096-1101. 178803, 9023189.
    • (1997) J Bacteriol , vol.179 , pp. 1096-1101
    • Turton, H.E.1    Dawes, I.W.2    Grant, C.M.3
  • 12
    • 77952965651 scopus 로고    scopus 로고
    • Identification of Saccharomyces cerevisiae genes involved in the resistance to phenolic fermentation inhibitors
    • 10.1007/s12010-009-8811-9, 19847383
    • Sundström L, Larsson S, Jönsson LJ. Identification of Saccharomyces cerevisiae genes involved in the resistance to phenolic fermentation inhibitors. Appl Biochem Biotechnol 2010, 161:106-115. 10.1007/s12010-009-8811-9, 19847383.
    • (2010) Appl Biochem Biotechnol , vol.161 , pp. 106-115
    • Sundström, L.1    Larsson, S.2    Jönsson, L.J.3
  • 13
    • 71249132746 scopus 로고    scopus 로고
    • Overexpression of Saccharomyces cerevisiae transcription factor and multidrug resistance genes conveys enhanced resistance to lignocelluloses-derived fermentation inhibitors
    • Alriksson B, Horvath HS, Jönsson LJ. Overexpression of Saccharomyces cerevisiae transcription factor and multidrug resistance genes conveys enhanced resistance to lignocelluloses-derived fermentation inhibitors. Process Biochem 2010, 45:264-271.
    • (2010) Process Biochem , vol.45 , pp. 264-271
    • Alriksson, B.1    Horvath, H.S.2    Jönsson, L.J.3
  • 14
    • 0030712874 scopus 로고    scopus 로고
    • Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions
    • 232555, 9372930
    • Fernandes L, Rodrigues-Pousada C, Struhl K. Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions. Mol Cell Biol 1997, 17:6982-6993. 232555, 9372930.
    • (1997) Mol Cell Biol , vol.17 , pp. 6982-6993
    • Fernandes, L.1    Rodrigues-Pousada, C.2    Struhl, K.3
  • 15
    • 0035846932 scopus 로고    scopus 로고
    • Multiple Yap1p-binding sites mediate induction of the yeast major facilitator FLR1 gene in response to drugs, oxidants, and alkylating agents
    • 10.1074/jbc.M008377200, 11056165
    • Nguyen DT, Alarco AM, Raymond M. Multiple Yap1p-binding sites mediate induction of the yeast major facilitator FLR1 gene in response to drugs, oxidants, and alkylating agents. J Biol Chem 2001, 276:1138-1145. 10.1074/jbc.M008377200, 11056165.
    • (2001) J Biol Chem , vol.276 , pp. 1138-1145
    • Nguyen, D.T.1    Alarco, A.M.2    Raymond, M.3
  • 16
    • 28244500972 scopus 로고    scopus 로고
    • Identification of novel Yap1p and Skn7p binding sites involved in the oxidative stress response of Saccharomyces cerevisiae
    • 10.1111/j.1365-2958.2005.04917.x, 2916641, 16313629
    • He XJ, Fassler JS. Identification of novel Yap1p and Skn7p binding sites involved in the oxidative stress response of Saccharomyces cerevisiae. Mol Microbiol 2005, 58:1454-1467. 10.1111/j.1365-2958.2005.04917.x, 2916641, 16313629.
    • (2005) Mol Microbiol , vol.58 , pp. 1454-1467
    • He, X.J.1    Fassler, J.S.2
  • 17
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • 10.1126/science.278.5338.680, 9381177
    • DeRisi JL, Lyer VR, Brown PO. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 1997, 278:680-686. 10.1126/science.278.5338.680, 9381177.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Lyer, V.R.2    Brown, P.O.3
  • 18
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • 10.1126/science.270.5235.467, 7569999
    • Schema M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270:467-470. 10.1126/science.270.5235.467, 7569999.
    • (1995) Science , vol.270 , pp. 467-470
    • Schema, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 20
    • 0036545614 scopus 로고    scopus 로고
    • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
    • 10.1074/mcp.M200001-MCP200, 12096114
    • Criffin TJ, Gygi SP, Ideker T, Rist B, Eng J, Hood L, Aebersold R. Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics 2002, 1:323-333. 10.1074/mcp.M200001-MCP200, 12096114.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 323-333
    • Criffin, T.J.1    Gygi, S.P.2    Ideker, T.3    Rist, B.4    Eng, J.5    Hood, L.6    Aebersold, R.7
  • 21
    • 14644395537 scopus 로고    scopus 로고
    • Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol
    • Kolkman A, Olsthoorn MMA, Heeremans CEM, Heck AJR, Slijper M. Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol. Mol Cell Proteomics 2005, 4:1-11.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1-11
    • Kolkman, A.1    Olsthoorn, M.M.A.2    Heeremans, C.E.M.3    Heck, A.J.R.4    Slijper, M.5
  • 23
    • 0038820029 scopus 로고    scopus 로고
    • Calorimetric determination of thermodynamic parameters of reaction reveals different enthalpic compensations of the yeast hexokinase isozymes
    • 10.1074/jbc.M211103200, 12611889
    • Bianconi ML. Calorimetric determination of thermodynamic parameters of reaction reveals different enthalpic compensations of the yeast hexokinase isozymes. J Biol Chem 2003, 278:18709-18713. 10.1074/jbc.M211103200, 12611889.
    • (2003) J Biol Chem , vol.278 , pp. 18709-18713
    • Bianconi, M.L.1
  • 24
    • 0020534311 scopus 로고
    • Cloning of genes that complement yeast kexokinase and glucokinase mutants
    • 217559, 6341351
    • Walsh RB, Kawasaki G, Fraenkel DG. Cloning of genes that complement yeast kexokinase and glucokinase mutants. J Bacteriol 1983, 154:1002-1004. 217559, 6341351.
    • (1983) J Bacteriol , vol.154 , pp. 1002-1004
    • Walsh, R.B.1    Kawasaki, G.2    Fraenkel, D.G.3
  • 25
    • 0031810672 scopus 로고    scopus 로고
    • Yeast carbon catabolite repression
    • 98918, 9618445
    • Gancedo JM. Yeast carbon catabolite repression. Microbiol Mol Biol Rev 1998, 62:334-361. 98918, 9618445.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 334-361
    • Gancedo, J.M.1
  • 26
    • 0035339662 scopus 로고    scopus 로고
    • The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae
    • 1221776, 11311123
    • Rodriquez A, De La Gera T, Herrero P, Moreno F. The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae. Biochem J 2001, 355:625-631. 1221776, 11311123.
    • (2001) Biochem J , vol.355 , pp. 625-631
    • Rodriquez, A.1    De La Gera, T.2    Herrero, P.3    Moreno, F.4
  • 27
    • 0030971548 scopus 로고    scopus 로고
    • Characterization of a glucose-repressed pyruvate kinase (Pyk2p) in Saccharomyces cerevisiae that is catalytically insensitive to fructose-1, 6-bisphosphate
    • 179064, 9139918
    • Boles E, Schulte F, Miosqa T, Freidel K, Schluter E, Zimmermann FK, Hollenberg CP, Heinishch JJ. Characterization of a glucose-repressed pyruvate kinase (Pyk2p) in Saccharomyces cerevisiae that is catalytically insensitive to fructose-1, 6-bisphosphate. J Bacteriol 1997, 179:2987-2993. 179064, 9139918.
    • (1997) J Bacteriol , vol.179 , pp. 2987-2993
    • Boles, E.1    Schulte, F.2    Miosqa, T.3    Freidel, K.4    Schluter, E.5    Zimmermann, F.K.6    Hollenberg, C.P.7    Heinishch, J.J.8
  • 28
    • 0025030281 scopus 로고
    • Regulation of sugar and ethanol metabolism in Saccharomyces cerevisiae
    • 10.3109/10409239009090611, 2171877
    • Wills C. Regulation of sugar and ethanol metabolism in Saccharomyces cerevisiae. Crit Rev Biochem Mol Biol 1990, 25:245-280. 10.3109/10409239009090611, 2171877.
    • (1990) Crit Rev Biochem Mol Biol , vol.25 , pp. 245-280
    • Wills, C.1
  • 29
    • 0037795745 scopus 로고    scopus 로고
    • The oxidative pentose phosphate pathway: structure and organization
    • 10.1016/S1369-5266(03)00039-6, 12753973
    • Kruger NJ, von Schaewen A. The oxidative pentose phosphate pathway: structure and organization. Curr Opin Plant Biol 2003, 6:236-246. 10.1016/S1369-5266(03)00039-6, 12753973.
    • (2003) Curr Opin Plant Biol , vol.6 , pp. 236-246
    • Kruger, N.J.1    von Schaewen, A.2
  • 30
    • 0029829625 scopus 로고    scopus 로고
    • Mutants that show increased sensitivity to hydrogen peroxide reveal an important role for the pentose-phosphate pathway in protection of yeast against oxidative stress
    • 10.1007/BF02173011, 8879247
    • Juhnke H, Krems B, Kotter P, Entian KD. Mutants that show increased sensitivity to hydrogen peroxide reveal an important role for the pentose-phosphate pathway in protection of yeast against oxidative stress. Mol Gen Genet 1996, 252:456-464. 10.1007/BF02173011, 8879247.
    • (1996) Mol Gen Genet , vol.252 , pp. 456-464
    • Juhnke, H.1    Krems, B.2    Kotter, P.3    Entian, K.D.4
  • 31
    • 0032608038 scopus 로고    scopus 로고
    • Heat shock proteins: facts, thoughts, and dreams
    • De Maio A. Heat shock proteins: facts, thoughts, and dreams. Shock 1999, 11:1-12.
    • (1999) Shock , vol.11 , pp. 1-12
    • De Maio, A.1
  • 33
    • 0028848045 scopus 로고
    • Clinical implications of the stress response
    • 10.1172/JCI117655, 295356, 7814629
    • Minowada G, Welch WJ. Clinical implications of the stress response. J Clin Invest 1995, 95:3-12. 10.1172/JCI117655, 295356, 7814629.
    • (1995) J Clin Invest , vol.95 , pp. 3-12
    • Minowada, G.1    Welch, W.J.2
  • 34
    • 0028084437 scopus 로고
    • Stress-induced transcriptional activation mediated YAP1 and YAP2 genes that encode the Jun family of transcriptional activators in Saccharomyces cerevisiae
    • 10.1007/BF00280413, 8107671
    • Hirata D, Yano K, Miyakawa T. Stress-induced transcriptional activation mediated YAP1 and YAP2 genes that encode the Jun family of transcriptional activators in Saccharomyces cerevisiae. Mol Gen Genet 1994, 242:250-256. 10.1007/BF00280413, 8107671.
    • (1994) Mol Gen Genet , vol.242 , pp. 250-256
    • Hirata, D.1    Yano, K.2    Miyakawa, T.3
  • 35
    • 19444375216 scopus 로고    scopus 로고
    • Peroxiredoxins: a historical overview and speculative preview of novel mechanisms and emerging concepts in cell signaling
    • 10.1016/j.freeradbiomed.2005.02.026, 15917183
    • Rhee SG, Chae HZ, Kim K. Peroxiredoxins: a historical overview and speculative preview of novel mechanisms and emerging concepts in cell signaling. Free Radic Biol Med 2005, 38:1543-1552. 10.1016/j.freeradbiomed.2005.02.026, 15917183.
    • (2005) Free Radic Biol Med , vol.38 , pp. 1543-1552
    • Rhee, S.G.1    Chae, H.Z.2    Kim, K.3
  • 36
    • 67651202633 scopus 로고    scopus 로고
    • Peroxiredoxin Tsa1 is the key peroxidase suppressing geneome instability and protecting against cell death in Saccharomyces cerevisiae
    • Iraqui I, Kienda G, Soeur J, Faye G, Baldacci G, Kolodner RD, Huang ME. Peroxiredoxin Tsa1 is the key peroxidase suppressing geneome instability and protecting against cell death in Saccharomyces cerevisiae. PLoS One 2009, 5:e1000524.
    • (2009) PLoS One , vol.5
    • Iraqui, I.1    Kienda, G.2    Soeur, J.3    Faye, G.4    Baldacci, G.5    Kolodner, R.D.6    Huang, M.E.7
  • 37
    • 0027409809 scopus 로고
    • Purification and characterization of the Saccharomyces cerevisiae BGL2 gene product, a cell wall endo-β-1,3-glucanase
    • 204315, 8458852
    • Mrsa V, Klebl F, Tanner W. Purification and characterization of the Saccharomyces cerevisiae BGL2 gene product, a cell wall endo-β-1,3-glucanase. J Bacteriol 1993, 175:2102-2106. 204315, 8458852.
    • (1993) J Bacteriol , vol.175 , pp. 2102-2106
    • Mrsa, V.1    Klebl, F.2    Tanner, W.3
  • 38
    • 0029122698 scopus 로고
    • Membrane fusion and the cell cycle: Cdc48p participates in the fusion of ER membranes
    • 10.1016/0092-8674(95)90268-6, 7553849
    • Latterich M, Frohlich KU, Schekman R. Membrane fusion and the cell cycle: Cdc48p participates in the fusion of ER membranes. Cell 1995, 82:885-893. 10.1016/0092-8674(95)90268-6, 7553849.
    • (1995) Cell , vol.82 , pp. 885-893
    • Latterich, M.1    Frohlich, K.U.2    Schekman, R.3
  • 39
    • 30344460667 scopus 로고    scopus 로고
    • The role of p97/Cdc48p in endoplasmic reticulum-associated degradation: from the immune system to yeast
    • 10.1007/3-540-28007-3_5, 16573238
    • Bar-Nun S. The role of p97/Cdc48p in endoplasmic reticulum-associated degradation: from the immune system to yeast. Curr Top Microbiol Immunol 2005, 300:95-125. 10.1007/3-540-28007-3_5, 16573238.
    • (2005) Curr Top Microbiol Immunol , vol.300 , pp. 95-125
    • Bar-Nun, S.1
  • 40
    • 30744451400 scopus 로고    scopus 로고
    • Functional division of substrate processing cofactors of the ubiquitin-selective Cdc48 chaperone
    • 10.1016/j.molcel.2005.12.014, 16427015
    • Rumpf S, Jentsch S. Functional division of substrate processing cofactors of the ubiquitin-selective Cdc48 chaperone. Mol Cell 2006, 21:261-269. 10.1016/j.molcel.2005.12.014, 16427015.
    • (2006) Mol Cell , vol.21 , pp. 261-269
    • Rumpf, S.1    Jentsch, S.2
  • 41
    • 79955370792 scopus 로고    scopus 로고
    • Cdc48 and cofactors Npi4-Ufd1 are important for G1 progression during heat stress by maintaining cell wall integrity in Saccharomyces cerevisiae
    • 10.1371/journal.pone.0018988, 3079750, 21526151
    • Hsieh MT, Chen RH. Cdc48 and cofactors Npi4-Ufd1 are important for G1 progression during heat stress by maintaining cell wall integrity in Saccharomyces cerevisiae. PLoS One 2011, 6:e18988. 10.1371/journal.pone.0018988, 3079750, 21526151.
    • (2011) PLoS One , vol.6
    • Hsieh, M.T.1    Chen, R.H.2
  • 42
    • 27944456827 scopus 로고    scopus 로고
    • Development and application of proteomics technologies in Saccharomyces cerevisiae
    • 10.1016/j.tibtech.2005.09.004, 16202464
    • Kolkman A, Slijper M, Heck AJR. Development and application of proteomics technologies in Saccharomyces cerevisiae. Trends Biotechnol 2005, 23:598-604. 10.1016/j.tibtech.2005.09.004, 16202464.
    • (2005) Trends Biotechnol , vol.23 , pp. 598-604
    • Kolkman, A.1    Slijper, M.2    Heck, A.J.R.3


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