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Volumn 62, Issue 6, 2012, Pages 1300-1306

Herbaspirillum canariense sp. nov., Herbaspirillum aurantiacum sp. nov. and Herbaspirillum soli sp. nov., isolated from volcanic mountain soil, and emended description of the genus Herbaspirillum

Author keywords

[No Author keywords available]

Indexed keywords

DNA; FATTY ACID; RNA 16S;

EID: 84861914154     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.031336-0     Document Type: Article
Times cited : (23)

References (30)
  • 1
    • 0000603831 scopus 로고
    • Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria
    • Alexander, D. B. & Zuberer, D. A. (1991). Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria. Biol Fertil Soils 12, 39-45.
    • (1991) Biol Fertil Soils , vol.12 , pp. 39-45
    • Alexander, D.B.1    Zuberer, D.A.2
  • 3
    • 0022629490 scopus 로고
    • Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int J Syst Bacteriol 36, 86-93. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences
    • Baldani, J. I., Baldani, V. L. D., Seldin, L. & Döbereiner, J. (1986). Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int J Syst Bacteriol 36, 86-93. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240-245.
    • (1986) Int J Syst Bacteriol , vol.45 , pp. 240-245
    • Baldani, J.I.1    Baldani, V.L.D.2    Seldin, L.3    Döbereiner, J.4
  • 4
    • 35648991375 scopus 로고    scopus 로고
    • EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences
    • Chun, J., Lee, J. H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2259-2261
    • Chun, J.1    Lee, J.H.2    Jung, Y.3    Kim, M.4    Kim, S.5    Kim, B.K.6    Lim, Y.W.7
  • 5
    • 0000738385 scopus 로고
    • AL
    • Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins
    • AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1138. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
    • (1986) In Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1105-1138
    • Claus, D.1    Berkeley, R.C.W.2
  • 6
    • 10044231713 scopus 로고    scopus 로고
    • Proposals of Curvibacter gracilis gen. nov., sp. nov. and Herbaspirillum putei sp. nov. for bacterial strains isolated from well water and reclassification of [Pseudomonas] huttiensis
    • [Pseudomonas] lanceolata, [Aquaspirillum] delicatum and [Aquaspirillum] autotrophicum as Herbaspirillum huttiense comb. nov., Curvibacter lanceolatus comb. nov., Curvibacter delicatus comb. nov. and Herbaspirillum autotrophicum comb. nov
    • Ding, L. & Yokota, A. (2004). Proposals of Curvibacter gracilis gen. nov., sp. nov. and Herbaspirillum putei sp. nov. for bacterial strains isolated from well water and reclassification of [Pseudomonas] huttiensis, [Pseudomonas] lanceolata, [Aquaspirillum] delicatum and [Aquaspirillum] autotrophicum as Herbaspirillum huttiense comb. nov., Curvibacter lanceolatus comb. nov., Curvibacter delicatus comb. nov. and Herbaspirillum autotrophicum comb. nov. Int J Syst Evol Microbiol 54, 2223-2230.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 2223-2230
    • Ding, L.1    Yokota, A.2
  • 7
    • 77953350009 scopus 로고    scopus 로고
    • Reclassification of Herbaspirillum putei as a later heterotypic synonym of Herbaspirillum huttiense, with the description of H. huttiense subsp. huttiense subsp. nov. and H. huttiense subsp. putei subsp. nov., comb. nov., and description of Herbaspirillum aquaticum sp. nov
    • Dobritsa, A. P., Reddy, M. C. S. & Samadpour, M. (2010). Reclassification of Herbaspirillum putei as a later heterotypic synonym of Herbaspirillum huttiense, with the description of H. huttiense subsp. huttiense subsp. nov. and H. huttiense subsp. putei subsp. nov., comb. nov., and description of Herbaspirillum aquaticum sp. nov. Int J Syst Evol Microbiol 60, 1418-1426.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1418-1426
    • Dobritsa, A.P.1    Reddy, M.C.S.2    Samadpour, M.3
  • 8
    • 0001991903 scopus 로고
    • Determinative methods of light microscopy
    • In, Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. H. Phillips. Washington, DC: American Society for Microbiology
    • Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21-33. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. H. Phillips. Washington, DC: American Society for Microbiology.
    • (1981) Manual of Methods for General Bacteriology , pp. 21-33
    • Doetsch, R.N.1
  • 9
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 10
    • 0020933869 scopus 로고
    • Parsimony in systematics: Biological and statistical issues
    • Felsenstein, J. (1983). Parsimony in systematics: biological and statistical issues. Annu Rev Ecol Syst 14, 313-333.
    • (1983) Annu Rev Ecol Syst , vol.14 , pp. 313-333
    • Felsenstein, J.1
  • 11
    • 2942672565 scopus 로고    scopus 로고
    • Herbaspirillum chlorophenolicum sp. nov., a 4-chlorophenol-degrading bacterium
    • Im, W. T., Bae, H. S., Yokota, A. & Lee, S. T. (2004). Herbaspirillum chlorophenolicum sp. nov., a 4-chlorophenol-degrading bacterium. Int J Syst Evol Microbiol 54, 851-855.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 851-855
    • Im, W.T.1    Bae, H.S.2    Yokota, A.3    Lee, S.T.4
  • 12
    • 35648971046 scopus 로고    scopus 로고
    • Herbaspirillum rhizosphaerae sp. nov., isolated from rhizosphere soil of Allium victorialis var. platyphyllum
    • Jung, S. Y., Lee, M. H., Oh, T. K. & Yoon, J. H. (2007). Herbaspirillum rhizosphaerae sp. nov., isolated from rhizosphere soil of Allium victorialis var. platyphyllum. Int J Syst Evol Microbiol 57, 2284-2288.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2284-2288
    • Jung, S.Y.1    Lee, M.H.2    Oh, T.K.3    Yoon, J.H.4
  • 13
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 14
    • 0035147657 scopus 로고    scopus 로고
    • Herbaspirillum frisingense sp. nov., a new nitrogen-fixing bacterial species that occurs in C4-fibre plants
    • Kirchhof, G., Eckert, B., Stoffels, M., Baldani, J. I., Reis, V. M. & Hartmann, A. (2001). Herbaspirillum frisingense sp. nov., a new nitrogen-fixing bacterial species that occurs in C4-fibre plants. Int J Syst Evol Microbiol 51, 157-168.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 157-168
    • Kirchhof, G.1    Eckert, B.2    Stoffels, M.3    Baldani, J.I.4    Reis, V.M.5    Hartmann, A.6
  • 16
    • 77956996468 scopus 로고
    • Use of ultraviolet absorbancetemperature profile for determining the guanine plus cytosine content of DNA
    • Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbancetemperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
    • (1968) Methods Enzymol 12B , pp. 195-206
    • Mandel, M.1    Marmur, J.2
  • 17
    • 0035116353 scopus 로고    scopus 로고
    • Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil
    • Poly, F., Monrozier, L. J. & Bally, R. (2001). Improvement in the RFLP procedure for studying the diversity of nifH genes in communities of nitrogen fixers in soil. Res Microbiol 152, 95-103.
    • (2001) Res Microbiol , vol.152 , pp. 95-103
    • Poly, F.1    Monrozier, L.J.2    Bally, R.3
  • 18
    • 33846456991 scopus 로고    scopus 로고
    • Characterization of xylanolytic bacteria present in the bract phyllosphere of the date palm Phoenix dactylifera
    • Rivas, R., García-Fraile, P., Mateos, P. F., Martínez-Molina, E. & Velázquez, E. (2007). Characterization of xylanolytic bacteria present in the bract phyllosphere of the date palm Phoenix dactylifera. Lett Appl Microbiol 44, 181-187.
    • (2007) Lett Appl Microbiol , vol.44 , pp. 181-187
    • Rivas, R.1    García-Fraile, P.2    Mateos, P.F.3    Martínez-Molina, E.4    Velázquez, E.5
  • 19
    • 0032025769 scopus 로고    scopus 로고
    • A fast method for approximating maximum likelihoods of phylogenetic trees from nucleotide sequences
    • Rogers, J. S. & Swofford, D. L. (1998). A fast method for approximating maximum likelihoods of phylogenetic trees from nucleotide sequences. Syst Biol 47, 77-89.
    • (1998) Syst Biol , vol.47 , pp. 77-89
    • Rogers, J.S.1    Swofford, D.L.2
  • 21
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 51249194274 scopus 로고
    • A simple method for the detection of lipolytic activity of micro-organisms and some observations on the influence of the contact between cells and fatty substrates
    • Sierra, G. (1957). A simple method for the detection of lipolytic activity of micro-organisms and some observations on the influence of the contact between cells and fatty substrates. Antonie van Leeuwenhoek 23, 15-22.
    • (1957) Antonie van Leeuwenhoek , vol.23 , pp. 15-22
    • Sierra, G.1
  • 24
    • 0030665873 scopus 로고    scopus 로고
    • Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen
    • Stoltzfus, J. R., So, R., Malarvithi, P. P., Ladha, J. K. & deBruijn, F. J. (1997). Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil 194, 25-36.
    • (1997) Plant Soil , vol.194 , pp. 25-36
    • Stoltzfus, J.R.1    So, R.2    Malarvithi, P.P.3    Ladha, J.K.4    de Bruijn, F.J.5
  • 25
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 26
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 28
    • 0344034153 scopus 로고    scopus 로고
    • Herbaspirillum lusitanum sp. nov., a novel nitrogen-fixing bacterium associated with root nodules of Phaseolus vulgaris
    • Valverde, A., Velázquez, E., Gutiérrez, C., Cervantes, E., Ventosa, A. & Igual, J. M. (2003). Herbaspirillum lusitanum sp. nov., a novel nitrogen-fixing bacterium associated with root nodules of Phaseolus vulgaris. Int J Syst Evol Microbiol 53, 1979-1983.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 1979-1983
    • Valverde, A.1    Velázquez, E.2    Gutiérrez, C.3    Cervantes, E.4    Ventosa, A.5    Igual, J.M.6
  • 29
    • 0000770675 scopus 로고
    • International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • other authors
    • Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
    • (1987) Int J Syst Bacteriol , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3    Grimont, P.A.D.4    Kandler, O.5    Krichevsky, M.I.6    Moore, L.H.7    Moore, W.E.C.8    Murray, R.G.E.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.