Energy coupling factor-type ABC transporters for vitamin uptake in prokaryotes

Biochemistry

Volumn 51, Issue 22, 2012, Pages 4390-4396

  Erkens, Guus B ^a   Majsnerowska, Maria ^a   Ter Beek, Josy ^a   Slotboom, Dirk Jan ^a  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ABC TRANSPORTER; ATP-BINDING CASSETTE TRANSPORTERS; DIFFERENT SUBSTRATES; ENERGY COUPLINGS; INTEGRAL MEMBRANE PROTEINS; NUCLEOTIDE-BINDING DOMAIN; SUBSTRATE BINDING; SUBSTRATE BINDING PROTEINS; TRANS-MEMBRANE PROTEINS;

BIOLOGICAL MEMBRANES; MICROORGANISMS; SUBSTRATES; TRACE ELEMENTS;

BINDING ENERGY;

ABC TRANSPORTER; ADENOSINE TRIPHOSPHATASE; ENERGY COUPLING FACTOR TRANSPORTER; MEMBRANE PROTEIN; NUCLEOTIDE BINDING PROTEIN; TRACE ELEMENT; UNCLASSIFIED DRUG;

ARTICLE; CRYSTAL STRUCTURE; DNA HELIX; PRIORITY JOURNAL; PROKARYOTE;

ATP-BINDING CASSETTE TRANSPORTERS; BACTERIA; BACTERIAL PROTEINS; MODELS, MOLECULAR; PROTEIN CONFORMATION; VITAMINS;

PROKARYOTA;

EID: 84861874699     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi300504v     Document Type: Article

References (42)

1. Davidson, A. L., Dassa, E., Orelle, C., and Chen, J. (2008) Structure, function, and evolution of bacterial ATP-binding cassette systems. Microbiol. Mol. Biol. Rev. 72, 317-364 (table). (Pubitemid 351822295)
2. Wang, B., Dukarevich, M., Sun, E. I., Yen, M. R., and Saier, M. H., Jr. (2009) Membrane porters of ATP-binding cassette transport systems are polyphyletic. J. Membr. Biol. 231, 1-10.
3. Dassa, E., and Bouige, P. (2001) The ABC of ABCS: A phylogenetic and functional classification of ABC systems in living organisms. Res. Microbiol. 152, 211-229. (Pubitemid 32436481)
4. Van der Heide, T., Stuart, M. C., and Poolman, B. (2001) On the osmotic signal and osmosensing mechanism of an ABC transport system for glycine betaine. EMBO J. 20, 7022-7032. (Pubitemid 34062294)
5. Hollenstein, K., Dawson, R. J., and Locher, K. P. (2007) Structure and mechanism of ABC transporter proteins. Curr. Opin. Struct. Biol. 17, 412-418. (Pubitemid 47451766)
6. Rodionov, D. A., Hebbeln, P., Eudes, A., ter Beek, J., Rodionova, I. A., Erkens, G. B., Slotboom, D. J., Gelfand, M. S., Osterman, A. L., Hanson, A. D., and Eitinger, T. (2009) A novel class of modular transporters for vitamins in prokaryotes. J. Bacteriol. 191, 42-51.
7. Duurkens, R. H., Tol, M. B., Geertsma, E. R., Permentier, H. P., and Slotboom, D. J. (2007) Flavin binding to the high affinity riboflavin transporter RibU. J. Biol. Chem. 282, 10380-10386. (Pubitemid 47093433)
8. Erkens, G. B., and Slotboom, D. J. (2010) Biochemical characterization of ThiT from Lactococcus lactis: A thiamin transporter with picomolar substrate binding affinity. Biochemistry 49, 3203-3212.
9. Eudes, A., Erkens, G. B., Slotboom, D. J., Rodionov, D. A., Naponelli, V., and Hanson, A. D. (2008) Identification of genes encoding the folate- and thiamine-binding membrane proteins in Firmicutes. J. Bacteriol. 190, 7591-7594.
10. Hebbeln, P., Rodionov, D. A., Alfandega, A., and Eitinger, T. (2007) Biotin uptake in prokaryotes by solute transporters with an optional ATP-binding cassette-containing module. Proc. Natl. Acad. Sci. U.S.A. 104, 2909-2914. (Pubitemid 46327977)
11. Siche, S., Neubauer, O., Hebbeln, P., and Eitinger, T. (2010) A bipartite S unit of an ECF-type cobalt transporter. Res. Microbiol. 161,824-829.
12. Ter Beek, J., Duurkens, R. H., Erkens, G. B., and Slotboom, D. J. (2011) Quaternary Structure and Functional Unit of Energy Coupling Factor (ECF)-type Transporters. J. Biol. Chem. 286, 5471-5475.
13. Zhang, P., Wang, J., and Shi, Y. (2010) Structure and mechanism of the S component of a bacterial ECF transporter. Nature 468, 717-720.
14. Erkens, G. B., Berntsson, R. P.-A., Fulyani, F., Majsnerowska, M., Vujicic-Žagar, A., ter Beek, J., Poolman, B., and Slotboom, D. J. (2011) The structural basis of modularity in ECF-type ABC transporters. Nat. Struct. Mol. Biol. 18, 755-760.
15. Rodionov, D. A., Hebbeln, P., Gelfand, M. S., and Eitinger, T. (2006) Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: Evidence for a novel group of ATP-binding cassette transporters. J. Bacteriol. 188, 317-327.
16. Burgess, C. M., Slotboom, D. J., Geertsma, E. R., Duurkens, R. H., Poolman, B., and van Sinderen, D. (2006) The riboflavin transporter RibU in Lactococcus lactis: Molecular characterization of gene expression and the transport mechanism. J. Bacteriol. 188, 2752- 2760.
17. Henderson, G. B., Zevely, E. M., and Huennekens, F. M. (1977) Purification and properties of a membrane-associated, folate-binding protein from Lactobacillus casei. J. Biol. Chem. 252, 3760-3765. (Pubitemid 8116113)
18. Henderson, G. B., Kojima, J. M., and Kumar, H. P. (1985) Differential interaction of cations with the thiamine and biotin transport proteins of Lactobacillus casei. Biochim Biophys Acta. 813,201-206. (Pubitemid 15141017)
19. Rodionov, D. A., Vitreschak, A. G., Mironov, A. A., and Gelfand, M. S. (2002) Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms. J. Biol. Chem. 277, 48949-48959. (Pubitemid 35470866)
20. Zhang, J., Lau, M. W., and Ferre-D'Amare, A. R. (2010) Ribozymes and riboswitches: Modulation of RNA function by small molecules. Biochemistry 49, 9123-9131.
21. Doolittle, R. F. (1986) Of Urfs and Orfs: Primer on how to analyze derived amino acid sequences, University Science Books, Mill Valley, CA.
22. Sander, C., and Schneider, R. (1991) Database of homologyderived protein structures and the structural meaning of sequence alignment. Proteins 9, 56-68.
23. Finkenwirth, F., Neubauer, O., Gunzenhauser, J., Schoknecht, J., Scolari, S., Stockl, M., Korte, T., Herrmann, A., and Eitinger, T. (2010) Subunit composition of an energy-coupling-factor-type biotin transporter analysed in living bacteria. Biochem. J. 431, 373-380.
24. Lemmon, M. A., Flanagan, J. M., Treutlein, H. R., Zhang, J., and Engelman, D. M. (1992) Sequence specificity in the dimerization of transmembrane á-helices. Biochemistry 31, 12719-12725. (Pubitemid 23027049)
25. Russ, W. P., and Engelman, D. M. (2000) The GxxxG motif: A framework for transmembrane helix-helix association. J. Mol. Biol. 296,911-919.
26. Schneider, D., Finger, C., Prodohl, A., and Volkmer, T. (2007) From interactions of single transmembrane helices to folding of á- helical membrane proteins: Analyzing transmembrane helix-helix interactions in bacteria. Curr. Protein Pept. Sci. 8, 45-61. (Pubitemid 46322269)
27. MacKenzie, K. R., Prestegard, J. H., and Engelman, D. M. (1997) A transmembrane helix dimer: Structure and implications. Science 276, 131-133. (Pubitemid 27161261)
28. Joh, N. H., Min, A., Faham, S., Whitelegge, J. P., Yang, D., Woods, V. L., and Bowie, J. U. (2008) Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins. Nature 453, 1266-1270. (Pubitemid 351913594)
29. Henderson, G. B., Zevely, E. M., and Huennekens, F. M. (1979) Mechanism of folate transport in Lactobacillus casei: Evidence for a component shared with the thiamine and biotin transport systems. J. Bacteriol. 137, 1308-1314. (Pubitemid 9198900)
30. Rees, D. C., Johnson, E., and Lewinson, O. (2009) ABC transporters: The power to change. Nat. Rev. Mol. Cell Biol. 10, 218-227.
31. Oldham, M. L., Davidson, A. L., and Chen, J. (2008) Structural insights into ABC transporter mechanism. Curr. Opin. Struct. Biol. 18, 726-733.
32. Chen, J., Lu, G., Lin, J., Davidson, A. L., and Quiocho, F. A. (2003) A tweezers-like motion of the ATP-binding cassette dimer in an ABC transport cycle. Mol. Cell 12, 651-661. (Pubitemid 37222486)
33. Locher, K. P., Lee, A. T., and Rees, D. C. (2002) The E. coli BtuCD structure: A framework for ABC transporter architecture and mechanism. Science 296, 1091-1098. (Pubitemid 34517120)
34. Jardetzky, O. (1966) Simple allosteric model for membrane pumps. Nature 211, 969-970.
35. Neubauer, O., Reiffler, C., Behrendt, L., and Eitinger, T. (2011) Interactions among the A and T units of an ECF-type biotin transporter analyzed by site-specific crosslinking. PLoS One 6, e29087.
36. Theobald, D. L., and Miller, C. (2010) Membrane transport proteins: Surprises in structural sameness. Nat. Struct. Mol. Biol. 17, 2-3.
37. Aravind, L., Mazumder, R., Vasudevan, S., and Koonin, E. V. (2002) Trends in protein evolution inferred from sequence and structure analysis. Curr. Opin. Struct. Biol. 12, 392-399. (Pubitemid 34804623)
38. Nikkola, M., Lindqvist, Y., and Schneider, G. (1994) Refined structure of transketolase from Saccharomyces cerevisiae at 2.0 Åresolution. J. Mol. Biol. 238, 387-404.
39. Biemans-Oldehinkel, E., Doeven, M. K., and Poolman, B. (2006) ABC transporter architecture and regulatory roles of accessory domains. FEBS Lett. 580, 1023-1035. (Pubitemid 43186038)
40. Gerber, S., Comellas-Bigler, M., Goetz, B. A., and Locher, K. P. (2008) Structural basis of trans-inhibition in a molybdate/tungstate ABC transporter. Science 321, 246-250. (Pubitemid 351989095)
41. Kadaba, N. S., Kaiser, J. T., Johnson, E., Lee, A., and Rees, D. C. (2008) The high-affinity E. coli methionine ABC transporter: Structure and allosteric regulation. Science 321, 250-253. (Pubitemid 351989096)
42. Neubauer, O., Alfandega, A., Schoknecht, J., Sternberg, U., Pohlmann, A., and Eitinger, T. (2009) Two essential arginine residues in the T components of energy-coupling factor transporters. J. Bacteriol. 191, 6482-6488.