Hypholoma lateritium isolated from coarse woody debris, the forest floor, and mineral soil in a deciduous forest in New Hampshire

Botany

Volumn 90, Issue 6, 2012, Pages 457-464

  Thompson, Therese A ^a,d   Thorn, R Greg ^b   Smith, Kevin T ^c  

^a UNIVERSITY OF NEW HAMPSHIRE   (United States)

^b UNIVERSITY OF WESTERN ONTARIO   (Canada)

^c USDA FOREST SERVICE   (United States)

^d Mount Ida College   (United States)

Author keywords

Coarse woody debris; DAPI; DNA fingerprinting; Hypholoma sublateritium; Nutrient recycling

Indexed keywords

COARSE WOODY DEBRIS; DEAD WOOD; DECIDUOUS FOREST; DECOMPOSITION; DNA FINGERPRINTING; FOREST FLOOR; FOREST SOIL; GENETIC ANALYSIS; GENETIC MARKER; IDENTIFICATION METHOD; MUSHROOM; NUTRIENT CYCLING; ORGANIC SOIL; SAPROTROPHY; SOIL HORIZON; SOIL MICROORGANISM; TEMPERATE FOREST; TRANSLOCATION;

BARTLETT EXPERIMENTAL FOREST; NEW HAMPSHIRE; UNITED STATES; WHITE MOUNTAIN NATIONAL FOREST;

ACER; ACER RUBRUM; BASIDIOMYCOTA; FUNGI; HYPHOLOMA; HYPHOLOMA SUBLATERITIUM;

EID: 84861855690     PISSN: 19162804     EISSN: None     Source Type: Journal    
DOI: 10.1139/B2012-011     Document Type: Article

References (49)

1. Arthur, M.A., and Fahey, T.J. 1990. Mass and nutrient content of decaying boles in an Engelmann spruce - subalpine fir forest, Rocky Mountain National Park, Colorado. Can. J. For. Res. 20(6): 730-737. doi:10.1139/x90-096.
2. Bebber, D.P., Watkinson, S.C., Boddy, L., and Darrah, P.R. 2011. Simulated nitrogen deposition affects wood decomposition by cord-forming fungi. Oecologia (Berl.), 167(4): 1177-1184. doi:10.1007/s00442-011-2057-2. PMID:21735202.
3. Boddy, L. 1999. Saprotrophic cord-forming fungi: meeting the challenge of heterogeneous environments. Mycologia, 91(1): 13-32. doi:10.2307/3761190.
4. Boddy, L., and Watkinson, S.C. 1995. Wood decomposition, higher fungi, and their role in nutrient redistribution. In Fifth International Mycological Congress. Can. J. Bot. (Suppl. 1): 73: S1377-S1383.
5. Breitenbach, J., and Kränzlin, F. 1995. Fungi of Switzerland. Vol. 4. Agarics, 2nd part. Mykologia Lucerne, Switzerland.
6. Cairney, J.W.G. 1992. Translocation of solutes in ectomycorrhizal and saprotrophic rhizomorphs. Mycol. Res. 96(2): 135-141. doi:10.1016/S0953-7562(09)80928-3.
7. Cairney, J.W.G. 2005. Basidiomycete mycelia in forest soils: dimensions, dynamics and roles in nutrient distribution. Mycol. Res. 109(1): 7-20. doi:10.1017/S0953756204001753. PMID:15736859.
8. Clinton, P.W., Buchanan, P.K., Wilkie, J.P., Smaill, S.J., and Kimberley, M.O. 2009. Decomposition of Nothofagus wood in vitro and nutrient mobilization by fungi. Can. J. For. Res. 39(11): 2193-2202. doi:10.1139/X09-134.
9. Connolly, J.H., and Jellison, J. 1995. Calcium translocation, calcium oxalate accumulation, and hyphal sheath morphology in the whiterot fungus Resinicium bicolor. Can. J. Bot. 73(6): 927-936. doi:10.1139/b95-101.
10. Davidson, R.W., Campbell, W.A., and Blaisdell, D.J. 1938. Differentiation of wood-decaying fungi by their reactions on gallic or tannic acid medium. J. Agric. Res. (Washington, D.C.), 57(9): 683-695 Available from http://naldr.nal.usda.gov/NALWeb/Agricola_Link.asp?Accession=IND43969196. [accessed 20 June 2011].
11. Foster, J.R., and Lang, G.E. 1982. Decomposition of red spruce and balsam fir boles in the White Mountains of New Hampshire. Can. J. For. Res. 12(3): 617-626. doi:10.1139/x82-094.
12. Franzén, I., Vasaitis, R., Penttila, R., and Stenlid, J. 2007. Population genetics of the wood-decay fungus Phlebia centrifuga P. Karst. In fragmented and continuous habitats. Mol. Ecol. 16(16): 3326-3333. doi:10.1111/j.1365-294X.2007.03394.x. PMID:17688536.
13. Godio, R.P., Fouces, R., Gudina, E.J., and Martin, J.F. 2004. Agrobacterium tumefaciens-mediated transformation of the antitumor clavaric acid-producing basidiomycete Hypholoma sublateritium. Curr. Genet. 46(5): 287-294. doi:10.1007/s00294-004-0533-5. PMID:15480676.
14. Harmon, M.E., Franklin, J.F., Swanson, F.J., Sollins, P., Gregory, S. V., Lattin, J.D., Anderson, N.H., Cline, S.P., Aumen, N.G., Sedell, J.R., Lienkaemper, G.W., Cromack, K., and Cummins, K.W. 1986. Ecology of coarse woody debris in temperate ecosystems. Adv. Ecol. Res, 15: 133-302. doi:10.1016/S0065-2504(08)60121-X
15. Hoyle, M.C. 1977. Nature and properties of some forest soils in the White Mountains of New Hampshire. USDA Forest Service Research Paper NE-260, Northeastern Forest Experiment Station, Upper Darby, Pa. Available from http://nrs.fs.fed.us/pubs/8250 [accessed 20 June 2011].
16. Huston, M.A. 1993. Models and management implication of coarse woody debris impacts on biodiversity. In Biodiversity and Coarse Wood Debris in Southern Forests: Proceedings of the Workshop on Coarse Woody Debris in Southern Forests: Effects on Biodiversity. Edited by J.W. McMinn and D.A. Crossley, Jr. Athens, Ga. pp. 139-143.
17. Jennings, D.H. 1990. The ability of basidiomycete mycelium to move nutrients through the soil ecosystem. In Nutrient cycling in terrestrial ecosystems. Edited by A.F. Harrison, P. Ineson, and O. W. Heal. Elsevier, London, U.K. pp. 233-245.
18. Jumpponen, A., Jones, K.L., and Blair, J. 2010. Vertical distribution of fungal communities in tallgrass prairie soil. Mycologia, 102(5): 1027-1041. doi:10.3852/09-316. PMID:20943503.
19. Legon, N.W., Henrici, A., Roberts, P.J., Spooner, B.M., and Watling, R. 2005. Checklist of the British and Irish Basidiomycota. Royal Botanic Gardens, Kew, Richmond, UK.
20. Lim, Y.W., Kim, B.K., Kim, C., Jung, H.S., Kim, B.-S., Lee, J.-H., and Chun, J. 2010. Assessment of soil fungal communities using pyrosequencing. J. Microbiol. 48(3): 284-289. doi:10.1007/s12275-010-9369-5. PMID:20571944.
21. Lindahl, B., Stenlid, J., Olsson, S., and Finlay, R. 1999. Translocation of 32P between interacting mycelia of a wood-decomposing fungus and ectomycorrhizal fungi in microcosm systems. New Phytol. 144(1): 183-193. doi:10.1046/j.1469-8137.1999.00502.x.
22. Lindahl, B., Finlay, R., and Olsson, S. 2001a. Simultaneous, bidirectional translocation of 32P and 33P between wood blocks connected by mycelial cords of Hypholoma fasciculare. New Phytol. 150(1): 189-194. doi:10.1046/j.1469-8137.2001.00074.x.
23. Lindahl, B., Stenlid, J., and Finlay, R. 2001b. Effects of resource availability on mycelial interactions and 32P transfer between a saprotrophic and an ectomycorrhizal fungus in soil microcosms. FEMS Microbiol. Ecol. 38(1): 43-52. doi:10.1111/j.1574-6941. 2001.tb00880.x.
24. Lynch, M.D.J., and Thorn, R.G. 2006. Diversity of basidiomycetes in Michigan agricultural soils. Appl. Environ. Microbiol. 72(11): 7050-7056. doi:10.1128/AEM.00826-06. PMID:16950900.
25. Meyer, W., Mitchell, T.G., Freedman, E.Z., and Vilgalys, R. 1993. Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. J. Clin. Microbiol. 31(9): 2274-2280 http://http://jcm.asm.org/content/31/9/2274.short [accessed 17 June 2011]. PMID:8408543.
26. Munsell C. 1994. Munsell soil color charts. Macbeth Division of Kollmorgen Instruments Corporation, New Windsor, N.Y.
27. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
28. O'Brien, H.E., Parrent, J.L., Jackson, J.A., Moncalvo, J.M., and Vilgalys, R. 2005. Fungal community analysis by large-scale sequencing of environmental samples. Appl. Environ. Microbiol. 71(9): 5544-5550. doi:10.1128/AEM.71.9.5544-5550.2005. PMID:16151147.
29. Ostrofsky, A., Jellison, J., Smith, K.T., and Shortle, W.C. 1997. Changes in cation concentrations in red spruce wood decayed by brown rot and white rot fungi. Can. J. For. Res. 27(4): 567-571. doi:10.1139/x96-188.
30. Paul, E.A. (Editor). 2007. Soil microbiology, ecology, and biochemistry. 3rd ed. Academic Press, Amsterdam.
31. Porter, T.M., Skillman, J.E., and Moncalvo, J.M. 2008. Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario. Mol. Ecol. 17(13): 3037-3050. doi:10.1111/j.1365-294X.2008.03813.x. PMID:18494767.
32. Rayner, A.D.M., and Boddy, L. 1988. Fungal decomposition of wood. John Wiley & Sons, Chichester, U.K.
33. Smith, M.L., Bruhn, J.N., and Anderson, J.B. 1992. The fungus Armillaria bulbosa is among the largest and oldest living organisms. Nature, 356(6368): 428-431. doi:10.1038/356428a0.
34. Smith, K.T., Shortle, W.C., Jellison, J., Connolly, J., and Schilling, J. 2007. Concentrations of Ca and Mg in early stages of sapwood decay in red spruce, eastern hemlock, red maple, and paper birch. Can. J. For. Res. 37(5): 957-965. doi:10.1139/X06-264.
35. Thompson, T.A. 2004. A study of basidiomycetes isolated from coarse woody debris and contiguous soil horizons in a mixed deciduous-conifer forest in New Hampshire, USA. Ph.D. dissertation, Department of Plant Biology, University of New Hampshire, Durham, N.H., USA.
36. Thorn, R.G., Reddy, C.A., Harris, D., and Paul, E.A. 1996. Isolation of saprophytic basidiomycetes from soil. Appl. Environ. Microbiol. 62(11): 4288-4292. PMID:16535455.
37. Tordoff, G.M., Chamberlain, P.M., Crowther, T.W., Black, H.I.J., Jones, T.H., Stott, A., and Boddy, L. 2011. Invertebrate grazing affects nitrogen partitioning in the saprotrophic fungus Phanerochaete velutina. Soil Biol. Biochem. 43(11): 2338-2346. doi:10.1016/j.soilbio.2011.07.005.
38. Torralba, S., Pisabarro, A.G., and Ramirez, L. 2004. Immunofluorescence microscopy of the microtubule cytoskeleton during conjugate division in the dikaryon Pleurotus ostreatus N001. Mycologia, 96(1): 41-51. doi:10.2307/3761986. PMID:21148827.
39. van der Wal, A., de Boer, W., Smant, W., and van Veen, J.A. 2007. Initial decay of woody fragments in soil is influenced by size, vertical position, nitrogen availability and soil origin. Plant Soil, 301(1-2): 189-201.
40. Vilgalys, R., and Hester, M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J. Bacteriol. 172(8): 4238-4246. PMID:2376561.
41. Wallander, H., Lindahl, B.D., and Nilsson, L.O. 2006. Limited transfer of nitrogen between wood decomposing and ectomycorrhizal mycelia when studied in the field. Mycorrhiza, 16(3): 213-217. doi:10.1007/s00572-006-0037-x. PMID:16598505.
42. Walther, G., and Weiß, M. 2008. Anamorphs in the Strophariaceae (Basidiomycota, Agaricales). Botany, 86(6): 551-566. doi:10.1139/B08-036.
43. Walther, G., Garnica, S., and Weiss, M. 2005. The systematic relevance of conidiogenesis modes in the gilled Agaricales. Mycol. Res. 109(5): 525-544. doi:10.1017/S0953756205002868. PMID:16018308.
44. Warcup, J.H. 1951. The ecology of soil fungi. Trans. Br. Mycol. Soc. 34(3): 376-399. doi:10.1016/S0007-1536(51)80065-2.
45. Wells, J.M., and Boddy, L. 1995. Effect of temperature on wood decay and translocation of soil-derived phosphorus in mycelial cord systems. New Phytol. 129(2): 289-297. doi:10.1111/j.1469-8137.1995.tb04299.x.
46. Wells, J.M., and Boddy, L. 2002. Interspecific carbon exchange and cost of interactions between basidiomycete mycelia in soil and wood. Funct. Ecol. 16(2): 153-161. doi:10.1046/j.1365-2435.2002.00595.x.
47. Wells, J.M., Hughes, C., and Boddy, L. 1990. The fate of soil-derived phosphorus in mycelial cord systems of Phanerochaete velutina and Phallus impudicus. New Phytol. 114(4): 595-606. doi:10.1111/j.1469-8137.1990.tb00430.x.
48. White, T.J., Bruns, T., Lee, S., and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols. A guide to methods and applications. Edited by M.A. Innis, D.H. Gelfand, J.J. Sninsky, and T.J. White. Academic Press, New York. pp. 315-322.
49. Yang, Z.L., Matheny, P.B., Ge, Z.W., Slot, J.C., and Hibbett, D.S. 2005. New Asian species of the genus Anamika (eugarics, hebelomatoid clade) based on morphology and ribosomal DNA sequences. Mycol. Res. 109(11): 1259-1267. doi:10.1017/S0953756205003758. PMID:16279419.