Managing and querying whole slide images

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 8425, Issue , 2012, Pages

  Wang, Fusheng ^a,b   Oh, Tae W ^a   Vergara Niedermayr, Cristobal ^a   Kurc, Tahsin ^a,b   Saltz, Joel ^a,b  

^a EMORY UNIVERSITY   (United States)

^b EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Image data management; PACS; Pathology analytical imaging standards; Whole slide image

Indexed keywords

ANALYTICAL RESULTS; BIOMEDICAL RESEARCH; BRAIN TUMORS; CLINICAL DIAGNOSIS; EXPERIMENT MANAGEMENT; FUNCTIONAL CHARACTERISTICS; HIGH RESOLUTION; IMAGE DATABASE; IMAGE DATABASE SYSTEMS; IMAGE QUERY; IMAGE VISUALIZATION; IN-SILICO; OPEN SOURCES; PACS; PICTURE ARCHIVING AND COMMUNICATIONS SYSTEMS; QUERY CAPABILITIES; WHOLE SLIDE IMAGE;

ALGORITHMS; DATABASE SYSTEMS; DIAGNOSIS; DISEASES; IMAGE RETRIEVAL; INFORMATION MANAGEMENT; PATHOLOGY; PHOTONIC CRYSTALS; RESEARCH; VISUALIZATION;

SEARCH ENGINES;

EID: 84861852753     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.912388     Document Type: Conference Paper

References (19)

1. "Dicom wg-26." http://medical.nema.org/DICOM/minutes/WG-26/ (2011).
2. Cooper, L., Kong, J., Gutman, D., Wang, F., and et. al., "An integrative approach for in silico glioma research, " Biomedical Engineering, IEEE Transactions on 57, 2617 -2621 (oct. 2010).
3. J. Kong, L. C., Moreno, C., Wang, F., Kurc, T., Saltz, J., and Brat, D., "In Silico Analysis of Nuclei in Glioblastoma using Large-scale Microscopy Images Improves Prediction of Treatment Response, " in [EMBC], (Aug/Sep 2011).
4. Cooper, L. A., Kong, J., Gutman, D. A., Wang, F., Gao, D., Appin, C., Cholleti, S. R., Pan, T. C., Sharma, A., Scarpace, L., Mikkelsen, T., Kurc, T., Moreno, C. S., Brat, D. J., and Saltz, J. H., "Integrated morphologic analysis for the identification and characterization of disease subtypes, " J Am Med Inform Assoc. (In Press).
5. Wang, F., Kong, J., Cooper, L., Pan, T., Tahsin, K., Chen, W., Sharma, A., Niedermayr, C., Oh, T.W., Brat, D., Farris, A. B., Foran, D., and Saltz, J., "Data model and database for high-resolution pathology analytical image informatics, " Journal of Pathology Informatics 2(32) (2011).
6. Wang, F., Kong, J., Gao, J., Vergara-Niedermayr, C., Adler, D., Cooper, L., Chen, W., Kurc, T., and Saltz, J., "High Performance Analytical Pathology Imaging Database for Algorithm Evaluation, " in [MICCAI/MICCAI-DCI], (2011).
7. Foran, D. J., Yang, L., Chen, W., Hu, J., Goodell, L. A., Reiss, M., Wang, F., Kurç, T. M., Pan, T., Sharma, A., and Saltz, J. H., "Imageminer: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology, " JAMIA 18(4), 403-415 (2011).
8. "Pathology analytical imaging standards." https://web.cci. emory.edu/confluence/display/PAIS (2011).
9. Goldberg, I., Allan, C., Burel, J.-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., Mellen, J., Sorger, P.,, and Swedlow, J., "The Open Microscopy Environment (OME) Data Model and XML File: Open Tools for Informatics and Quantitative Analysis in Biological Imaging, " Genome Biol. 6(R47) (2005).
10. "The Open Microscopy Environment." http://www.openmicroscopy. org (2011).
11. "Life Sciences Domain Analysis Model (LS DAM)." https://wiki.nci.nih.gov/display/LS/ Life+Sciences+Domain+Analysis+Model+(2011(2011).
12. "Pathology Image Database System Wiki." https://web.cci.emory. edu/confluence/display/PIDB (2011).
13. "Java Advanced Imaging." http://java.sun.com/products/java- media/jai/iio.html (2011).
14. "OpenSlide." http://openslide.org/(2011).
15. Fielding, R. T., Architectural Styles and the Design of Network-based Software Architectures, PhD thesis, University of California, Irvine (2000).
16. "Emory in silico brain tumor research center." https://wiki.nci.nih.gov/display/ISCRE/ Emory+University+In+Silico+Brain+Tumor+Research+Center (2011).
17. "Aperio Spectrum." http://www.aperio.com (2011).
18. Martone, M. E., Tran, J., Wong, W. W., Sargis, J., Fong, L., Larson, S., Lamont, S. P., Gupta, A., and Ellisman, M. H., "The cell centered database project: An update on building community resources for managing and sharing 3d imaging data, " Journal of Structural Biology 161(3), 220- 231 (2008). (Pubitemid 351375097)
19. "OpenCCDB." http://openccdb.org (2011).