메뉴 건너뛰기




Volumn 28, Issue 6, 2012, Pages 594-606

Pilot studies for development of an HIV subtype panel for surveillance of global diversity

(17)  Manak, Mark a,b   Sina, Silvana b   Anekella, Bharathi a   Hewlett, Indira c   Sanders Buell, Eric b   Ragupathy, Viswanath c   Kim, Jerome d   Vermeulen, Marion e   Stramer, Susan L f   Sabino, Ester g   Grabarczyk, Piotr h   Michael, Nelson d   Peel, Sheila d   Garrett, Patricia a   Tovanabutra, Sodsai b   Busch, Michael P i   Schito, Marco j  


Author keywords

[No Author keywords available]

Indexed keywords

ANTIGEN P24; PHYTOHEMAGGLUTININ; VIRUS ENVELOPE PROTEIN;

EID: 84861851364     PISSN: 08892229     EISSN: 19318405     Source Type: Journal    
DOI: 10.1089/aid.2011.0271     Document Type: Article
Times cited : (18)

References (42)
  • 1
    • 77951065603 scopus 로고    scopus 로고
    • November
    • AIDS Epidemic Update: November 2009. www.unaids.org/ globalreport/global- report.htm.
    • (2009) AIDS Epidemic Update
  • 3
    • 69249174058 scopus 로고    scopus 로고
    • First transmission of human immunodeficiency virus Type 1 by a cellular blood product after mandatory nucleic acid screening in Germany
    • Schmidt M, et al.: First transmission of human immunodeficiency virus Type 1 by a cellular blood product after mandatory nucleic acid screening in Germany. Transfusion 2009;49(9):1836-1844.
    • (2009) Transfusion , vol.49 , Issue.9 , pp. 1836-1844
    • Schmidt, M.1
  • 4
    • 78650235515 scopus 로고    scopus 로고
    • Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease
    • Tebit DM and Arts EJ: Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease. Lancet Infect Dis 2011;11(1):45-56.
    • (2011) Lancet. Infect. Dis. , vol.11 , Issue.1 , pp. 45-56
    • Tebit, D.M.1    Arts, E.J.2
  • 5
    • 55249105920 scopus 로고    scopus 로고
    • The challenge of HIV-1 subtype diversity
    • Taylor BS and Hammer SM: The challenge of HIV-1 subtype diversity. N Engl J Med 2008;359(18):1965-1966.
    • (2008) N. Engl. J. Med. , vol.359 , Issue.18 , pp. 1965-1966
    • Taylor, B.S.1    Hammer, S.M.2
  • 6
    • 77955483527 scopus 로고    scopus 로고
    • Effect of host genetics on incidence of HIV neuroretinal disorder in patients with AIDS
    • Sezgin E, et al.: Effect of host genetics on incidence of HIV neuroretinal disorder in patients with AIDS. J Acquir Immune Defic Syndr 2010;54(4):343-351.
    • (2010) J. Acquir. Immune. Defic. Syndr. , vol.54 , Issue.4 , pp. 343-351
    • Sezgin, E.1
  • 7
    • 34648824673 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 subtype distribution in the worldwide epidemic: Pathogenetic and therapeutic implications
    • Buonaguro L, Tornesello ML, and Buonaguro FM: Human immunodeficiency virus type 1 subtype distribution in the worldwide epidemic: Pathogenetic and therapeutic implications. J Virol 2007;81(19):10209-10219.
    • (2007) J. Virol. , vol.81 , Issue.19 , pp. 10209-10219
    • Buonaguro, L.1    Tornesello, M.L.2    Buonaguro, F.M.3
  • 8
    • 73849119255 scopus 로고    scopus 로고
    • Update on HIV viral-load assays: New technologies and testing in resource-limited settings
    • Soriano V and De Mendoza C: Update on HIV viral-load assays: New technologies and testing in resource-limited settings. Future Virol 2009;4(5):423-430.
    • (2009) Future. Virol. , vol.4 , Issue.5 , pp. 423-430
    • Soriano, V.1    De Mendoza, C.2
  • 9
    • 77649206986 scopus 로고    scopus 로고
    • Improvement of an ultrasensitive human immunodeficiency virus type 1 real-time reverse transcriptase- polymerase chain reaction targeting the long terminal repeat region
    • Edelmann A, et al.: Improvement of an ultrasensitive human immunodeficiency virus type 1 real-time reverse transcriptase- polymerase chain reaction targeting the long terminal repeat region. Transfusion 2010;50(3):685-692.
    • (2010) Transfusion , vol.50 , Issue.3 , pp. 685-692
    • Edelmann, A.1
  • 10
    • 49049113525 scopus 로고    scopus 로고
    • Difficulties in diagnosing group O human immunodeficiency virus type 1 acute primary infection
    • Henquell C, et al.: Difficulties in diagnosing group O human immunodeficiency virus type 1 acute primary infection. J Clin Microbiol 2008;46(7):2453-2456.
    • (2008) J. Clin. Microbiol. , vol.46 , Issue.7 , pp. 2453-2456
    • Henquell, C.1
  • 11
    • 79954615802 scopus 로고    scopus 로고
    • A cluster of human immunodeficiency virus Type 1 recombinant form escaping detection by commercial genomic amplification assays
    • Foglieni B, et al.: A cluster of human immunodeficiency virus Type 1 recombinant form escaping detection by commercial genomic amplification assays. Transfusion 2011; 51(4):719-730.
    • (2011) Transfusion , vol.51 , Issue.4 , pp. 719-730
    • Foglieni, B.1
  • 12
    • 69249177072 scopus 로고    scopus 로고
    • Experience of mandatory nucleic acid test (NAT) screening across all blood organizations in Germany: NAT yield versus breakthrough transmissions
    • Nubling CM, et al.: Experience of mandatory nucleic acid test (NAT) screening across all blood organizations in Germany: NAT yield versus breakthrough transmissions. Transfusion 2009;49(9):1850-1858.
    • (2009) Transfusion , vol.49 , Issue.9 , pp. 1850-1858
    • Nubling, C.M.1
  • 13
    • 78650909877 scopus 로고    scopus 로고
    • Comparison of the RealTime HIV-1, COBAS TaqMan 48 v1.0, Easy Q v1.2, and Versant v3.0 assays for determination of HIV-1 viral loads in a cohort of Canadian patients with diverse HIV subtype infections
    • Church D, et al.: Comparison of the RealTime HIV-1, COBAS TaqMan 48 v1.0, Easy Q v1.2, and Versant v3.0 assays for determination of HIV-1 viral loads in a cohort of Canadian patients with diverse HIV subtype infections. J Clin Microbiol 2011;49(1):118-124.
    • (2011) J. Clin. Microbiol. , vol.49 , Issue.1 , pp. 118-124
    • Church, D.1
  • 14
    • 0036376853 scopus 로고    scopus 로고
    • False negative DNA polymerase chain reaction in an infant with subtype C human immunodeficiency virus 1 infection
    • Kline NE, Schwarzwald H, and Kline MW: False negative DNA polymerase chain reaction in an infant with subtype C human immunodeficiency virus 1 infection. Pediatr Infect Dis J 2002;21(9):885-886.
    • (2002) Pediatr. Infect. Dis. J. , vol.21 , Issue.9 , pp. 885-886
    • Kline, N.E.1    Schwarzwald, H.2    Kline, M.W.3
  • 15
    • 13844276187 scopus 로고    scopus 로고
    • Failure of serial human immunodeficiency virus type 1 DNA polymerase chain reactions to identify human immunodeficiency virus type 1 clade A/G
    • Obaro SK, et al.: Failure of serial human immunodeficiency virus type 1 DNA polymerase chain reactions to identify human immunodeficiency virus type 1 clade A/G. Pediatr Infect Dis J 2005;24(2):183-184.
    • (2005) Pediatr. Infect. Dis. J. , vol.24 , Issue.2 , pp. 183-184
    • Obaro, S.K.1
  • 16
    • 48749133585 scopus 로고    scopus 로고
    • Discrepancies in assignment of subtype/ recombinant forms by genotyping programs for HIV type 1 drug resistance testing may falsely predict superinfection
    • Ntemgwa M, et al.: Discrepancies in assignment of subtype/ recombinant forms by genotyping programs for HIV type 1 drug resistance testing may falsely predict superinfection. AIDS Res Hum Retroviruses 2008;24(7):995-1002.
    • (2008) AIDS Res. Hum. Retroviruses. , vol.24 , Issue.7 , pp. 995-1002
    • Ntemgwa, M.1
  • 17
    • 31944440917 scopus 로고    scopus 로고
    • Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent
    • Snoeck J, et al.: Discordances between interpretation algorithms for genotypic resistance to protease and reverse transcriptase inhibitors of human immunodeficiency virus are subtype dependent. Antimicrob Agents Chemother 2006;50(2):694-701.
    • (2006) Antimicrob Agents. Chemother. , vol.50 , Issue.2 , pp. 694-701
    • Snoeck, J.1
  • 18
    • 40549113345 scopus 로고    scopus 로고
    • HIV-1 subtype as a determinant of disease progression
    • Kuritzkes DR: HIV-1 subtype as a determinant of disease progression. J Infect Dis 2008;197(5):638-639.
    • (2008) J. Infect. Dis. , vol.197 , Issue.5 , pp. 638-639
    • Kuritzkes, D.R.1
  • 19
    • 0035150940 scopus 로고    scopus 로고
    • Differences in perinatal transmission among human immunodeficiency virus type 1 genotypes
    • Renjifo B, et al.: Differences in perinatal transmission among human immunodeficiency virus type 1 genotypes. J Hum Virol 2001;4(1):16-25.
    • (2001) J. Hum. Virol. , vol.4 , Issue.1 , pp. 16-25
    • Renjifo, B.1
  • 20
    • 34047207715 scopus 로고    scopus 로고
    • HIV-1 subtype D infection is associated with faster disease progression than subtype A in spite of similar plasma HIV-1 loads
    • Baeten JM, et al.: HIV-1 subtype D infection is associated with faster disease progression than subtype A in spite of similar plasma HIV-1 loads. J Infect Dis 2007;195(8):1177-1180.
    • (2007) J. Infect. Dis. , vol.195 , Issue.8 , pp. 1177-1180
    • Baeten, J.M.1
  • 21
    • 34548235885 scopus 로고    scopus 로고
    • Baseline HIV type 1 coreceptor tropism predicts disease progression
    • Daar ES, et al.: Baseline HIV type 1 coreceptor tropism predicts disease progression. Clin Infect Dis 2007;45(5):643-649.
    • (2007) Clin. Infect. Dis. , vol.45 , Issue.5 , pp. 643-649
    • Daar, E.S.1
  • 22
    • 33645829606 scopus 로고    scopus 로고
    • Acquired immunodeficiency syndrome-related lymphoma: Simultaneous treatment with combined cyclophosphamide, doxorubicin, vincristine, and prednisone chemotherapy and highly active antiretroviral therapy is safe and improves survival-results of the German Multicenter Trial
    • Weiss R, et al.: Acquired immunodeficiency syndrome-related lymphoma: Simultaneous treatment with combined cyclophosphamide, doxorubicin, vincristine, and prednisone chemotherapy and highly active antiretroviral therapy is safe and improves survival-results of the German Multicenter Trial. Cancer 2006;106(7):1560-1568.
    • (2006) Cancer , vol.106 , Issue.7 , pp. 1560-1568
    • Weiss, R.1
  • 23
    • 12444282714 scopus 로고    scopus 로고
    • Influence of host genetic variation on susceptibility to HIV type 1 infection
    • Kaslow RA, Dorak T, and Tang JJ: Influence of host genetic variation on susceptibility to HIV type 1 infection. J Infect Dis 2005;191(Suppl 1):S68-S77.
    • (2005) J. Infect. Dis. , vol.191 , Issue.SUPPL.1
    • Kaslow, R.A.1    Dorak, T.2    Tang, J.J.3
  • 24
    • 0037393440 scopus 로고    scopus 로고
    • Sequence characterization of the protease and partial reverse transcriptase proteins of the NED panel, an international HIV type 1 subtype reference and standards panel
    • Huang DD, Giesler TA, and Bremer JW: Sequence characterization of the protease and partial reverse transcriptase proteins of the NED panel, an international HIV type 1 subtype reference and standards panel. AIDS Res Hum Retroviruses 2003;19(4):321-328.
    • (2003) AIDS Res. Hum. Retroviruses. , vol.19 , Issue.4 , pp. 321-328
    • Huang, D.D.1    Giesler, T.A.2    Bremer, J.W.3
  • 25
    • 20944444788 scopus 로고    scopus 로고
    • Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01-AE, and CRF02-AG, for the development and assessment of candidate vaccines
    • Brown BK, et al.: Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01-AE, and CRF02-AG, for the development and assessment of candidate vaccines. J Virol 2005;79(10):6089-6101.
    • (2005) J. Virol. , vol.79 , Issue.10 , pp. 6089-6101
    • Brown, B.K.1
  • 26
    • 44649102135 scopus 로고    scopus 로고
    • Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
    • Keele BF, et al.: Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci USA 2008;105(21):7552-7557.
    • (2008) Proc. Natl. Acad. Sci. USA , vol.105 , Issue.21 , pp. 7552-7557
    • Keele, B.F.1
  • 27
    • 66049139947 scopus 로고    scopus 로고
    • Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
    • Salazar-Gonzalez JF, et al.: Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection. J Exp Med 2009;206(6):1273-1289.
    • (2009) J. Exp. Med. , vol.206 , Issue.6 , pp. 1273-1289
    • Salazar-Gonzalez, J.F.1
  • 28
    • 0041828179 scopus 로고    scopus 로고
    • Dynamics of HIV viremia and antibody seroconversion in plasma donors: Implications for diagnosis and staging of primary HIV infection
    • Fiebig EW, et al.: Dynamics of HIV viremia and antibody seroconversion in plasma donors: Implications for diagnosis and staging of primary HIV infection. AIDS 2003;17(13): 1871-1879.
    • (2003) AIDS , vol.17 , Issue.13 , pp. 1871-1879
    • Fiebig, E.W.1
  • 29
    • 0026597474 scopus 로고
    • Sensitive microculture method for isolation of human immunodeficiency virus type 1 from blood leukocytes
    • Erice A, et al.: Sensitive microculture method for isolation of human immunodeficiency virus type 1 from blood leukocytes. J Clin Microbiol 1992;30(2):444-448.
    • (1992) J. Clin. Microbiol. , vol.30 , Issue.2 , pp. 444-448
    • Erice, A.1
  • 30
    • 79952445068 scopus 로고    scopus 로고
    • Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial
    • Rolland M, et al.: Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial. Nat Med 2011;17(3):366-371.
    • (2011) Nat. Med. , vol.17 , Issue.3 , pp. 366-371
    • Rolland, M.1
  • 31
    • 77954067056 scopus 로고    scopus 로고
    • DIVEIN: A web server to analyze phylogenies, sequence divergence, diversity, and informative sites
    • Deng W, et al.: DIVEIN: A web server to analyze phylogenies, sequence divergence, diversity, and informative sites. Biotechniques 2010;48(5):405-408.
    • (2010) Biotechniques , vol.48 , Issue.5 , pp. 405-408
    • Deng, W.1
  • 32
    • 77958143449 scopus 로고    scopus 로고
    • Estimating time since infection in early homogeneous HIV-1 samples using a poisson model
    • Giorgi EE, et al.: Estimating time since infection in early homogeneous HIV-1 samples using a poisson model. BMC Bioinformatics 2010;11:532.
    • (2010) BMC Bioinformatics. , vol.11 , pp. 532
    • Giorgi, E.E.1
  • 33
    • 24944451573 scopus 로고    scopus 로고
    • Quantitative evaluation of HIV and SIV co-receptor use with GHOST 3) cell assay
    • Vodros D and Fenyo EM: Quantitative evaluation of HIV and SIV co-receptor use with GHOST(3) cell assay. Methods Mol Biol 2005;304:333-342.
    • (2005) Methods. Mol. Biol. , Issue.304 , pp. 333-342
    • Vodros, D.1    Fenyo, E.M.2
  • 34
    • 0032993198 scopus 로고    scopus 로고
    • Evaluation of the ultrasensitive Roche Amplicor HIV-1 monitor assay for quantitation of human immunodeficiency virus type 1 RNA
    • Erali M and Hillyard DR: Evaluation of the ultrasensitive Roche Amplicor HIV-1 monitor assay for quantitation of human immunodeficiency virus type 1 RNA. J Clin Microbiol 1999;37(3):792-795.
    • (1999) J. Clin. Microbiol. , vol.37 , Issue.3 , pp. 792-795
    • Erali, M.1    Hillyard, D.R.2
  • 35
    • 77950485243 scopus 로고    scopus 로고
    • Correction of underquantification of human immunodeficiency virus type 1 load with the second version of the Roche Cobas AmpliPrep/Cobas TaqMan assay
    • De Bel A, et al.: Correction of underquantification of human immunodeficiency virus type 1 load with the second version of the Roche Cobas AmpliPrep/Cobas TaqMan assay. J Clin Microbiol 2010;48(4):1337-1342.
    • (2010) J. Clin. Microbiol. , vol.48 , Issue.4 , pp. 1337-1342
    • De Bel, A.1
  • 36
    • 0034049471 scopus 로고    scopus 로고
    • Quantitative and cost comparison of ultrasensitive human immunodeficiency virus type 1 RNA viral load assays: Bayer bDNA quantiplex versions 3.0 and 2.0 and Roche PCR Amplicor monitor version 1.5
    • Elbeik T, et al.: Quantitative and cost comparison of ultrasensitive human immunodeficiency virus type 1 RNA viral load assays: Bayer bDNA quantiplex versions 3.0 and 2.0 and Roche PCR Amplicor monitor version 1.5. J Clin Microbiol 2000;38(3):1113-1120.
    • (2000) J. Clin. Microbiol. , vol.38 , Issue.3 , pp. 1113-1120
    • Elbeik, T.1
  • 37
    • 18844469287 scopus 로고    scopus 로고
    • Plasma HIV-1 copy number and in vitro infectivity of plasma prior to and during combination antiretroviral treatment
    • Vella S, et al.: Plasma HIV-1 copy number and in vitro infectivity of plasma prior to and during combination antiretroviral treatment. Antiviral Res 2000;47(3):189-198.
    • (2000) Antiviral Res. , vol.47 , Issue.3 , pp. 189-198
    • Vella, S.1
  • 38
    • 0004658325 scopus 로고
    • Viral dynamics in primary HIV-1 infection
    • PiatakM Jr, et al.: Viral dynamics in primary HIV-1 infection. Lancet 1993;341(8852):1099.
    • (1993) Lancet , vol.341 , Issue.8852 , pp. 1099
    • Piatak Jr., M.1
  • 39
    • 24944462913 scopus 로고    scopus 로고
    • Isolation of human immunodeficiency virus type 1 from peripheral blood monocytes
    • Gorry PR, et al.: Isolation of human immunodeficiency virus type 1 from peripheral blood monocytes. Methods Mol Biol 2005;304:25-33.
    • (2005) Methods. Mol. Biol. , vol.304 , pp. 25-33
    • Gorry, P.R.1
  • 40
    • 33846036832 scopus 로고    scopus 로고
    • Inefficient human immunodeficiency virus replication in mobile lymphocytes
    • Sourisseau M, et al.: Inefficient human immunodeficiency virus replication in mobile lymphocytes. J Virol 2007;81(2): 1000-1012.
    • (2007) J. Virol. , vol.81 , Issue.2 , pp. 1000-1012
    • Sourisseau, M.1
  • 41
    • 67449147145 scopus 로고    scopus 로고
    • The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
    • Goonetilleke N, et al.: The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. J Exp Med 2009;206(6): 1253-1272.
    • (2009) J. Exp. Med. , vol.206 , Issue.6 , pp. 1253-1272
    • Goonetilleke, N.1
  • 42
    • 77956367254 scopus 로고    scopus 로고
    • Biological and genetic characterization of HIV type 1 subtype B and nonsubtype B transmitted viruses: Usefulness for vaccine candidate assessment
    • Cuevas MT, et al.: Biological and genetic characterization of HIV type 1 subtype B and nonsubtype B transmitted viruses: Usefulness for vaccine candidate assessment. AIDS Res Hum Retroviruses 2010;26(9):1019-1025.
    • (2010) AIDS Res. Hum. Retroviruses. , vol.26 , Issue.9 , pp. 1019-1025
    • Cuevas, M.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.