메뉴 건너뛰기




Volumn 44, Issue 9, 2012, Pages 835-845

QTF: Quasi-triangulation file format

Author keywords

Molecular modeling; Neutral file format; Protein Data Bank (PDB); Quasi triangulation; Structural computational molecular biology; Voronoi diagram of spherical balls

Indexed keywords

APPLICATION PROBLEMS; APPLICATION SOFTWARES; FILE FORMATS; INPUT FILES; MOLECULAR MODELS; MOLECULAR VOLUME; NEUTRAL FILES; PROTEIN DATA BANK; QUASI-TRIANGULATION; THREE DIMENSIONAL SPACE; VORONOI DIAGRAMS;

EID: 84861795172     PISSN: 00104485     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cad.2012.04.003     Document Type: Article
Times cited : (12)

References (32)
  • 1
    • 33748916438 scopus 로고    scopus 로고
    • Interaction interfaces in proteins via the Voronoi diagram of atoms
    • DOI 10.1016/j.cad.2006.07.007, PII S0010448506001400
    • C.-M. Kim, C.-I. Won, Y. Cho, D. Kim, S. Lee, J. Bhak, and D.-S. Kim Interaction interfaces in proteins via the Voronoi diagram of atoms Computer-Aided Design 38 11 2006 1192 1204 (Pubitemid 44427794)
    • (2006) CAD Computer Aided Design , vol.38 , Issue.11 , pp. 1192-1204
    • Kim, C.-M.1    Won, C.-I.2    Cho, Y.3    Kim, D.4    Lee, S.5    Bhak, J.6    Kim, D.-S.7
  • 2
    • 40649097302 scopus 로고    scopus 로고
    • Pocket extraction on proteins via the Voronoi diagram of spheres
    • DOI 10.1016/j.jmgm.2007.10.002, PII S1093326307001507
    • D. Kim, C.-H. Cho, Y. Cho, J. Ryu, J. Bhak, and D.-S. Kim Pocket extraction on proteins via the Voronoi diagram of spheres Journal of Molecular Graphics & Modelling 26 7 2008 1104 1112 (Pubitemid 351374849)
    • (2008) Journal of Molecular Graphics and Modelling , vol.26 , Issue.7 , pp. 1104-1112
    • Kim, D.1    Cho, C.-H.2    Cho, Y.3    Ryu, J.4    Bhak, J.5    Kim, D.-S.6
  • 4
    • 36448970902 scopus 로고    scopus 로고
    • Molecular surfaces on proteins via beta shapes
    • DOI 10.1016/j.cad.2006.10.008, PII S0010448506002053
    • J. Ryu, R. Park, and D.-S. Kim Molecular surfaces on proteins via beta shapes Computer-Aided Design 39 12 2007 1042 1057 (Pubitemid 350166325)
    • (2007) CAD Computer Aided Design , vol.39 , Issue.12 , pp. 1042-1057
    • Ryu, J.1    Park, R.2    Kim, D.-S.3
  • 5
    • 22944434527 scopus 로고    scopus 로고
    • Euclidean Voronoi diagram of 3D balls and its computation via tracing edges
    • DOI 10.1016/j.cad.2005.02.013, PII S0010448505000436
    • D.-S. Kim, Y. Cho, and D. Kim Euclidean Voronoi diagram of 3D balls and its computation via tracing edges Computer-Aided Design 37 13 2005 1412 1424 (Pubitemid 41042461)
    • (2005) CAD Computer Aided Design , vol.37 , Issue.13 , pp. 1412-1424
    • Kim, D.-S.1    Cho, Y.2    Kim, D.3
  • 7
    • 77955565392 scopus 로고    scopus 로고
    • Quasi-worlds and quasi-operators on quasi-triangulations
    • D.-S. Kim, Y. Cho, and K. Sugihara Quasi-worlds and quasi-operators on quasi-triangulations Computer-Aided Design 42 10 2010 874 888
    • (2010) Computer-Aided Design , vol.42 , Issue.10 , pp. 874-888
    • Kim, D.-S.1    Cho, Y.2    Sugihara, K.3
  • 8
    • 77955569416 scopus 로고    scopus 로고
    • Three-dimensional beta-shapes and beta-complexes via quasi-triangulation
    • D.-S. Kim, Y. Cho, K. Sugihara, J. Ryu, and D. Kim Three-dimensional beta-shapes and beta-complexes via quasi-triangulation Computer-Aided Design 42 10 2010 911 929
    • (2010) Computer-Aided Design , vol.42 , Issue.10 , pp. 911-929
    • Kim, D.-S.1    Cho, Y.2    Sugihara, K.3    Ryu, J.4    Kim, D.5
  • 9
    • 33745813533 scopus 로고    scopus 로고
    • Quasi-triangulation and interworld data structure in three dimensions
    • DOI 10.1271/bbb.70.808, PII S0010448506000716
    • D.-S. Kim, D. Kim, Y. Cho, and K. Sugihara Quasi-triangulation and interworld data structure in three dimensions Computer-Aided Design 38 7 2006 808 819 (Pubitemid 44036794)
    • (2006) CAD Computer Aided Design , vol.38 , Issue.7 , pp. 808-819
    • Kim, D.-S.1    Kim, D.2    Cho, Y.3    Sugihara, K.4
  • 10
    • 33748906998 scopus 로고    scopus 로고
    • Three-dimensional beta shapes
    • DOI 10.1016/j.cad.2006.07.002, PII S0010448506001382
    • D.-S. Kim, J. Seo, D. Kim, J. Ryu, and C.-H. Cho Three-dimensional beta shapes Computer-Aided Design 38 11 2006 1179 1191 (Pubitemid 44427793)
    • (2006) CAD Computer Aided Design , vol.38 , Issue.11 , pp. 1179-1191
    • Kim, D.-S.1    Seo, J.2    Kim, D.3    Ryu, J.4    Cho, C.-H.5
  • 15
    • 33646128957 scopus 로고    scopus 로고
    • Region-expansion for the Voronoi diagram of 3D spheres
    • D. Kim, and D.-S. Kim Region-expansion for the Voronoi diagram of 3D spheres Computer-Aided Design 38 5 2006 417 430
    • (2006) Computer-Aided Design , vol.38 , Issue.5 , pp. 417-430
    • Kim, D.1    Kim, D.-S.2
  • 19
    • 33745842713 scopus 로고    scopus 로고
    • Topology representation for the Voronoi diagram of 3D spheres
    • (Also available at)
    • Y. Cho, D. Kim, and D.-S. Kim Topology representation for the Voronoi diagram of 3D spheres International Journal of CAD/CAM 5 1 2005 59 68 (Also available at http://www.ijcc.org)
    • (2005) International Journal of CAD/CAM , vol.5 , Issue.1 , pp. 59-68
    • Cho, Y.1    Kim, D.2    Kim, D.-S.3
  • 20
    • 20544433165 scopus 로고
    • Van der Waals volumes and radii
    • A. Bondi van der Waals volumes and radii Journal of Physical Chemistry 68 1964 441 451
    • (1964) Journal of Physical Chemistry , vol.68 , pp. 441-451
    • Bondi, A.1
  • 21
    • 9344228417 scopus 로고
    • Atomic screening constants from SCF functions
    • E. Clementi, and D.L. Raimondi Atomic screening constants from SCF functions Journal of Chemical Physics 38 11 1963 2686 2689
    • (1963) Journal of Chemical Physics , vol.38 , Issue.11 , pp. 2686-2689
    • Clementi, E.1    Raimondi, D.L.2
  • 24
    • 71549116080 scopus 로고    scopus 로고
    • Molecular double-bond covalent radii for elements Li-E112
    • P. Pyykkö, and M. Atsumi Molecular double-bond covalent radii for elements Li-E112 Chemistry - A European Journal 15 2009 12770 12779
    • (2009) Chemistry - A European Journal , vol.15 , pp. 12770-12779
    • Pyykkö, P.1    Atsumi, M.2
  • 25
    • 58449128738 scopus 로고    scopus 로고
    • Molecular single-bond covalent radii for elements 1-118
    • P. Pyykkö, and M. Atsumi Molecular single-bond covalent radii for elements 1-118 Chemistry - A European Journal 15 2009 186 197
    • (2009) Chemistry - A European Journal , vol.15 , pp. 186-197
    • Pyykkö, P.1    Atsumi, M.2
  • 27
    • 33748546968 scopus 로고    scopus 로고
    • Intermolecular nonbonded contact distances in organic crystal structures: Comparison with distances expected from van der Waals Radii
    • R.S. Rowland, and R. Taylor Intermolecular nonbonded contact distances in organic crystal structures: comparison with distances expected from van der Waals radii The Journal of Physical Chemistry 100 1996 7384 7391 (Pubitemid 126789411)
    • (1996) Journal of Physical Chemistry , vol.100 , Issue.18 , pp. 7384-7391
    • Rowland, R.S.1    Taylor, R.2
  • 28
    • 84944648082 scopus 로고
    • Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides
    • R.D. Shannon Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides Acta Crystallographica Section A A32 1976 751 767
    • (1976) Acta Crystallographica Section A , vol.32 A , pp. 751-767
    • Shannon, R.D.1
  • 29
    • 0001473314 scopus 로고
    • Atomic radii in crystals
    • J.C. Slater Atomic radii in crystals Journal of Chemical Physics 41 10 1964 3199 3204
    • (1964) Journal of Chemical Physics , vol.41 , Issue.10 , pp. 3199-3204
    • Slater, J.C.1
  • 30
    • 84861808413 scopus 로고    scopus 로고
    • Symyx Technologies Inc. Homepage
    • Symyx Technologies Inc. Homepage. http://www.symyx.com. 2010.
    • (2010)
  • 31
    • 84861808412 scopus 로고    scopus 로고
    • Tripos Inc. Homepage
    • Tripos Inc. Homepage. http://www.tripos.com. 2010.
    • (2010)
  • 32
    • 84862776651 scopus 로고    scopus 로고
    • Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets
    • 10.1002/jcc.22956
    • D.-S. Kim, J. Ryu, H. Shin, and Y. Cho Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets Journal of Computational Chemistry 2012 10.1002/jcc.22956
    • (2012) Journal of Computational Chemistry
    • Kim, D.-S.1    Ryu, J.2    Shin, H.3    Cho, Y.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.