-
1
-
-
33748916438
-
Interaction interfaces in proteins via the Voronoi diagram of atoms
-
DOI 10.1016/j.cad.2006.07.007, PII S0010448506001400
-
C.-M. Kim, C.-I. Won, Y. Cho, D. Kim, S. Lee, J. Bhak, and D.-S. Kim Interaction interfaces in proteins via the Voronoi diagram of atoms Computer-Aided Design 38 11 2006 1192 1204 (Pubitemid 44427794)
-
(2006)
CAD Computer Aided Design
, vol.38
, Issue.11
, pp. 1192-1204
-
-
Kim, C.-M.1
Won, C.-I.2
Cho, Y.3
Kim, D.4
Lee, S.5
Bhak, J.6
Kim, D.-S.7
-
2
-
-
40649097302
-
Pocket extraction on proteins via the Voronoi diagram of spheres
-
DOI 10.1016/j.jmgm.2007.10.002, PII S1093326307001507
-
D. Kim, C.-H. Cho, Y. Cho, J. Ryu, J. Bhak, and D.-S. Kim Pocket extraction on proteins via the Voronoi diagram of spheres Journal of Molecular Graphics & Modelling 26 7 2008 1104 1112 (Pubitemid 351374849)
-
(2008)
Journal of Molecular Graphics and Modelling
, vol.26
, Issue.7
, pp. 1104-1112
-
-
Kim, D.1
Cho, C.-H.2
Cho, Y.3
Ryu, J.4
Bhak, J.5
Kim, D.-S.6
-
3
-
-
76549089189
-
Sphericity of a protein via the β-complex
-
D.-S. Kim, J.-K. Kim, C.-I. Won, C.-M. Kim, J.Y. Park, and J. Bhak Sphericity of a protein via the β-complex Journal of Molecular Graphics and Modelling 28 7 2010 636 649
-
(2010)
Journal of Molecular Graphics and Modelling
, vol.28
, Issue.7
, pp. 636-649
-
-
Kim, D.-S.1
Kim, J.-K.2
Won, C.-I.3
Kim, C.-M.4
Park, J.Y.5
Bhak, J.6
-
4
-
-
36448970902
-
Molecular surfaces on proteins via beta shapes
-
DOI 10.1016/j.cad.2006.10.008, PII S0010448506002053
-
J. Ryu, R. Park, and D.-S. Kim Molecular surfaces on proteins via beta shapes Computer-Aided Design 39 12 2007 1042 1057 (Pubitemid 350166325)
-
(2007)
CAD Computer Aided Design
, vol.39
, Issue.12
, pp. 1042-1057
-
-
Ryu, J.1
Park, R.2
Kim, D.-S.3
-
5
-
-
22944434527
-
Euclidean Voronoi diagram of 3D balls and its computation via tracing edges
-
DOI 10.1016/j.cad.2005.02.013, PII S0010448505000436
-
D.-S. Kim, Y. Cho, and D. Kim Euclidean Voronoi diagram of 3D balls and its computation via tracing edges Computer-Aided Design 37 13 2005 1412 1424 (Pubitemid 41042461)
-
(2005)
CAD Computer Aided Design
, vol.37
, Issue.13
, pp. 1412-1424
-
-
Kim, D.-S.1
Cho, Y.2
Kim, D.3
-
7
-
-
77955565392
-
Quasi-worlds and quasi-operators on quasi-triangulations
-
D.-S. Kim, Y. Cho, and K. Sugihara Quasi-worlds and quasi-operators on quasi-triangulations Computer-Aided Design 42 10 2010 874 888
-
(2010)
Computer-Aided Design
, vol.42
, Issue.10
, pp. 874-888
-
-
Kim, D.-S.1
Cho, Y.2
Sugihara, K.3
-
8
-
-
77955569416
-
Three-dimensional beta-shapes and beta-complexes via quasi-triangulation
-
D.-S. Kim, Y. Cho, K. Sugihara, J. Ryu, and D. Kim Three-dimensional beta-shapes and beta-complexes via quasi-triangulation Computer-Aided Design 42 10 2010 911 929
-
(2010)
Computer-Aided Design
, vol.42
, Issue.10
, pp. 911-929
-
-
Kim, D.-S.1
Cho, Y.2
Sugihara, K.3
Ryu, J.4
Kim, D.5
-
9
-
-
33745813533
-
Quasi-triangulation and interworld data structure in three dimensions
-
DOI 10.1271/bbb.70.808, PII S0010448506000716
-
D.-S. Kim, D. Kim, Y. Cho, and K. Sugihara Quasi-triangulation and interworld data structure in three dimensions Computer-Aided Design 38 7 2006 808 819 (Pubitemid 44036794)
-
(2006)
CAD Computer Aided Design
, vol.38
, Issue.7
, pp. 808-819
-
-
Kim, D.-S.1
Kim, D.2
Cho, Y.3
Sugihara, K.4
-
10
-
-
33748906998
-
Three-dimensional beta shapes
-
DOI 10.1016/j.cad.2006.07.002, PII S0010448506001382
-
D.-S. Kim, J. Seo, D. Kim, J. Ryu, and C.-H. Cho Three-dimensional beta shapes Computer-Aided Design 38 11 2006 1179 1191 (Pubitemid 44427793)
-
(2006)
CAD Computer Aided Design
, vol.38
, Issue.11
, pp. 1179-1191
-
-
Kim, D.-S.1
Seo, J.2
Kim, D.3
Ryu, J.4
Cho, C.-H.5
-
12
-
-
69149102637
-
Data deposition and annotation at the worldwide protein data bank
-
S. Dutta, K. Burkhardt, J. Young, G.J. Swaminathan, T. Matsuura, K. Henrick, H. Nakamura, and H.M. Berman Data deposition and annotation at the worldwide protein data bank Molecular Biotechnology 42 2009 1 13
-
(2009)
Molecular Biotechnology
, vol.42
, pp. 1-13
-
-
Dutta, S.1
Burkhardt, K.2
Young, J.3
Swaminathan, G.J.4
Matsuura, T.5
Henrick, K.6
Nakamura, H.7
Berman, H.M.8
-
13
-
-
81855199036
-
Querying simplexes in quasi-triangulation
-
D.-S. Kim, J.-K. Kim, Y. Cho, and C.-M. Kim Querying simplexes in quasi-triangulation Computer-Aided Design 44 2 2012 85 98
-
(2012)
Computer-Aided Design
, vol.44
, Issue.2
, pp. 85-98
-
-
Kim, D.-S.1
Kim, J.-K.2
Cho, Y.3
Kim, C.-M.4
-
14
-
-
84861837383
-
BetaMol: A molecular modeling, analysis and visualization software based on the beta-complex and the quasi-triangulation
-
Y. Cho, J-K Kim, J. Ryu, C-I Won, C-M Kim, and D. Kim BetaMol: a molecular modeling, analysis and visualization software based on the beta-complex and the quasi-triangulation Journal of Advanced Mechanical Design, Systems, and Manufacturing 6 3 2012 389 403
-
(2012)
Journal of Advanced Mechanical Design, Systems, and Manufacturing
, vol.6
, Issue.3
, pp. 389-403
-
-
Cho, Y.1
Kim, J.-K.2
Ryu, J.3
Won, C.-I.4
Kim, C.-M.5
Kim, D.6
-
15
-
-
33646128957
-
Region-expansion for the Voronoi diagram of 3D spheres
-
D. Kim, and D.-S. Kim Region-expansion for the Voronoi diagram of 3D spheres Computer-Aided Design 38 5 2006 417 430
-
(2006)
Computer-Aided Design
, vol.38
, Issue.5
, pp. 417-430
-
-
Kim, D.1
Kim, D.-S.2
-
17
-
-
0029488073
-
Defining, computing, and visualizing molecular interfaces
-
Atlanta. GA
-
Varshney A, Brooks FP Jr., Richardson DC, Wright WV, Manocha D. Defining, computing, and visualizing molecular interfaces. In: Proceedings of the IEEE Visualization '95. Atlanta. GA. 1995. p. 36-43.
-
(1995)
Proceedings of the IEEE Visualization '95
, pp. 36-43
-
-
Varshney, A.1
Brooks Jr., F.P.2
Richardson, D.C.3
Wright, W.V.4
Manocha, D.5
-
19
-
-
33745842713
-
Topology representation for the Voronoi diagram of 3D spheres
-
(Also available at)
-
Y. Cho, D. Kim, and D.-S. Kim Topology representation for the Voronoi diagram of 3D spheres International Journal of CAD/CAM 5 1 2005 59 68 (Also available at http://www.ijcc.org)
-
(2005)
International Journal of CAD/CAM
, vol.5
, Issue.1
, pp. 59-68
-
-
Cho, Y.1
Kim, D.2
Kim, D.-S.3
-
20
-
-
20544433165
-
Van der Waals volumes and radii
-
A. Bondi van der Waals volumes and radii Journal of Physical Chemistry 68 1964 441 451
-
(1964)
Journal of Physical Chemistry
, vol.68
, pp. 441-451
-
-
Bondi, A.1
-
21
-
-
9344228417
-
Atomic screening constants from SCF functions
-
E. Clementi, and D.L. Raimondi Atomic screening constants from SCF functions Journal of Chemical Physics 38 11 1963 2686 2689
-
(1963)
Journal of Chemical Physics
, vol.38
, Issue.11
, pp. 2686-2689
-
-
Clementi, E.1
Raimondi, D.L.2
-
22
-
-
43749110500
-
Covalent radii revisited
-
DOI 10.1039/b801115j
-
B. Cordero, V. Gómez, A.E. Platero-Prats, M. Revées, J. Echeverría, E. Cremades, F. Barragán, and S. Alvarez Covalent radii revisited Dalton Transactions 2008 2832 2838 (Pubitemid 351693252)
-
(2008)
Dalton Transactions
, Issue.21
, pp. 2832-2838
-
-
Cordero, B.1
Gomez, V.2
Platero-Prats, A.E.3
Reves, M.4
Echeverria, J.5
Cremades, E.6
Barragan, F.7
Alvarez, S.8
-
23
-
-
66149121377
-
Consistent van der Waals radii for the whole main group
-
M. Mantina, A.C. Chamberlin, R. Valero, C.J. Cramer, and D.G. Truhlar Consistent van der Waals radii for the whole main group The Journal of Physical Chemistry A 113 2009 5806 5812
-
(2009)
The Journal of Physical Chemistry A
, vol.113
, pp. 5806-5812
-
-
Mantina, M.1
Chamberlin, A.C.2
Valero, R.3
Cramer, C.J.4
Truhlar, D.G.5
-
24
-
-
71549116080
-
Molecular double-bond covalent radii for elements Li-E112
-
P. Pyykkö, and M. Atsumi Molecular double-bond covalent radii for elements Li-E112 Chemistry - A European Journal 15 2009 12770 12779
-
(2009)
Chemistry - A European Journal
, vol.15
, pp. 12770-12779
-
-
Pyykkö, P.1
Atsumi, M.2
-
25
-
-
58449128738
-
Molecular single-bond covalent radii for elements 1-118
-
P. Pyykkö, and M. Atsumi Molecular single-bond covalent radii for elements 1-118 Chemistry - A European Journal 15 2009 186 197
-
(2009)
Chemistry - A European Journal
, vol.15
, pp. 186-197
-
-
Pyykkö, P.1
Atsumi, M.2
-
27
-
-
33748546968
-
Intermolecular nonbonded contact distances in organic crystal structures: Comparison with distances expected from van der Waals Radii
-
R.S. Rowland, and R. Taylor Intermolecular nonbonded contact distances in organic crystal structures: comparison with distances expected from van der Waals radii The Journal of Physical Chemistry 100 1996 7384 7391 (Pubitemid 126789411)
-
(1996)
Journal of Physical Chemistry
, vol.100
, Issue.18
, pp. 7384-7391
-
-
Rowland, R.S.1
Taylor, R.2
-
28
-
-
84944648082
-
Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides
-
R.D. Shannon Revised effective ionic radii and systematic studies of interatomic distances in halides and chalcogenides Acta Crystallographica Section A A32 1976 751 767
-
(1976)
Acta Crystallographica Section A
, vol.32 A
, pp. 751-767
-
-
Shannon, R.D.1
-
29
-
-
0001473314
-
Atomic radii in crystals
-
J.C. Slater Atomic radii in crystals Journal of Chemical Physics 41 10 1964 3199 3204
-
(1964)
Journal of Chemical Physics
, vol.41
, Issue.10
, pp. 3199-3204
-
-
Slater, J.C.1
-
30
-
-
84861808413
-
-
Symyx Technologies Inc. Homepage
-
Symyx Technologies Inc. Homepage. http://www.symyx.com. 2010.
-
(2010)
-
-
-
31
-
-
84861808412
-
-
Tripos Inc. Homepage
-
Tripos Inc. Homepage. http://www.tripos.com. 2010.
-
(2010)
-
-
-
32
-
-
84862776651
-
Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets
-
10.1002/jcc.22956
-
D.-S. Kim, J. Ryu, H. Shin, and Y. Cho Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets Journal of Computational Chemistry 2012 10.1002/jcc.22956
-
(2012)
Journal of Computational Chemistry
-
-
Kim, D.-S.1
Ryu, J.2
Shin, H.3
Cho, Y.4
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