-
1
-
-
25144475996
-
Marine microorganisms and global nutrient cycles
-
K.R. Arrigo Marine microorganisms and global nutrient cycles Nature 437 2005 349 355
-
(2005)
Nature
, vol.437
, pp. 349-355
-
-
Arrigo, K.R.1
-
2
-
-
33847752606
-
New developments in the marine nitrogen cycle
-
J.A. Brandes, A.H. Devol, and C. Deutsch New developments in the marine nitrogen cycle Chem. Rev. 107 2007 577 589
-
(2007)
Chem. Rev.
, vol.107
, pp. 577-589
-
-
Brandes, J.A.1
Devol, A.H.2
Deutsch, C.3
-
3
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
W.G. Zumft Cell biology and molecular basis of denitrification Microbiol. Mol. Biol. Rev. 61 1997 533 616
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 533-616
-
-
Zumft, W.G.1
-
4
-
-
49749112308
-
Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification
-
C.M. Jones, B. Stres, M. Rosenquist, and S. Hallin Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification Mol. Biol. Evol. 25 2008 1955 1966
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1955-1966
-
-
Jones, C.M.1
Stres, B.2
Rosenquist, M.3
Hallin, S.4
-
6
-
-
0033614964
-
Missing lithotroph identified as new planctomycete
-
M. Strous, J.A. Fuerst, E.H. Kramer, S. Logemann, G. Muyzer, K.T. van de Pas-Schoonen, R. Webb, J.G. Kuenen, and M.S. Jetten Missing lithotroph identified as new planctomycete Nature 400 1999 446 449
-
(1999)
Nature
, vol.400
, pp. 446-449
-
-
Strous, M.1
Fuerst, J.A.2
Kramer, E.H.3
Logemann, S.4
Muyzer, G.5
Van De Pas-Schoonen, K.T.6
Webb, R.7
Kuenen, J.G.8
Jetten, M.S.9
-
7
-
-
33645741019
-
Deciphering the evolution and metabolism of an anammox bacterium from a community genome
-
M. Strous, E. Pelletier, S. Mangenot, T. Rattei, A. Lehner, M.W. Taylor, M. Horn, H. Daims, D. Bartol-Mavel, P. Wincker, V. Barbe, N. Fonknechten, D. Vallenet, B. Segurens, C. Schenowitz-Truong, C. Medigue, A. Collingro, B. Snel, B.E. Dutilh, H.J. Op den Camp, C. van der Drift, I. Cirpus, K.T. van de Pas-Schoonen, H.R. Harhangi, L. van Niftrik, M. Schmid, J. Keltjens, J. van de Vossenberg, B. Kartal, H. Meier, D. Frishman, M.A. Huynen, H.W. Mewes, J. Weissenbach, M.S. Jetten, M. Wagner, and D. Le Paslier Deciphering the evolution and metabolism of an anammox bacterium from a community genome Nature 440 2006 790 794
-
(2006)
Nature
, vol.440
, pp. 790-794
-
-
Strous, M.1
Pelletier, E.2
Mangenot, S.3
Rattei, T.4
Lehner, A.5
Taylor, M.W.6
Horn, M.7
Daims, H.8
Bartol-Mavel, D.9
Wincker, P.10
Barbe, V.11
Fonknechten, N.12
Vallenet, D.13
Segurens, B.14
Schenowitz-Truong, C.15
Medigue, C.16
Collingro, A.17
Snel, B.18
Dutilh, B.E.19
Op Den Camp, H.J.20
Van Der Drift, C.21
Cirpus, I.22
Van De Pas-Schoonen, K.T.23
Harhangi, H.R.24
Van Niftrik, L.25
Schmid, M.26
Keltjens, J.27
Van De Vossenberg, J.28
Kartal, B.29
Meier, H.30
Frishman, D.31
Huynen, M.A.32
Mewes, H.W.33
Weissenbach, J.34
Jetten, M.S.35
Wagner, M.36
Le Paslier, D.37
more..
-
8
-
-
0034625054
-
Involvement of a novel hydroxylamine oxidoreductase in anaerobic ammonium oxidation
-
J. Schalk, S. de Vries, J.G. Kuenen, and M.S. Jetten Involvement of a novel hydroxylamine oxidoreductase in anaerobic ammonium oxidation Biochemistry 39 2000 5405 5412
-
(2000)
Biochemistry
, vol.39
, pp. 5405-5412
-
-
Schalk, J.1
De Vries, S.2
Kuenen, J.G.3
Jetten, M.S.4
-
9
-
-
80455122803
-
Molecular mechanism of anaerobic ammonium oxidation
-
B. Kartal, W.J. Maalcke, N.M. de Almeida, I. Cirpus, J. Gloerich, W. Geerts, H.J. Op den Camp, H.R. Harhangi, E.M. Janssen-Megens, K.J. Francoijs, H.G. Stunnenberg, J.T. Keltjens, M.S. Jetten, and M. Strous Molecular mechanism of anaerobic ammonium oxidation Nature 479 2011 127 130
-
(2011)
Nature
, vol.479
, pp. 127-130
-
-
Kartal, B.1
Maalcke, W.J.2
De Almeida, N.M.3
Cirpus, I.4
Gloerich, J.5
Geerts, W.6
Op Den Camp, H.J.7
Harhangi, H.R.8
Janssen-Megens, E.M.9
Francoijs, K.J.10
Stunnenberg, H.G.11
Keltjens, J.T.12
Jetten, M.S.13
Strous, M.14
-
10
-
-
33847233302
-
Isolation of a multiheme protein with features of a hydrazine oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture
-
M. Shimamura, T. Nishiyama, H. Shigetomo, T. Toyomoto, Y. Kawahara, K. Furukawa, and T. Fujii Isolation of a multiheme protein with features of a hydrazine oxidizing enzyme from an anaerobic ammonium-oxidizing enrichment culture Appl. Environ. Microbiol. 73 2007 1065 1072
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1065-1072
-
-
Shimamura, M.1
Nishiyama, T.2
Shigetomo, H.3
Toyomoto, T.4
Kawahara, Y.5
Furukawa, K.6
Fujii, T.7
-
11
-
-
41549140435
-
Another multiheme protein, hydroxylamine oxidoreductase, abundantly produced in an anammox bacterium besides the hydrazine-oxidizing enzyme
-
M. Shimamura, T. Nishiyama, K. Shinya, Y. Kawahara, K. Furukawa, and T. Fujii Another multiheme protein, hydroxylamine oxidoreductase, abundantly produced in an anammox bacterium besides the hydrazine-oxidizing enzyme J. Biosci. Bioeng. 105 2008 243 248
-
(2008)
J. Biosci. Bioeng.
, vol.105
, pp. 243-248
-
-
Shimamura, M.1
Nishiyama, T.2
Shinya, K.3
Kawahara, Y.4
Furukawa, K.5
Fujii, T.6
-
12
-
-
78349267920
-
A heterodimeric cytochrome c complex with a very low redox potential from an anaerobic ammonium-oxidizing enrichment culture
-
S. Ukita, T. Fujii, D. Hira, T. Nishiyama, T. Kawase, C.T. Migita, and K. Furukawa A heterodimeric cytochrome c complex with a very low redox potential from an anaerobic ammonium-oxidizing enrichment culture FEMS Microbiol. Lett. 313 2010 61 67
-
(2010)
FEMS Microbiol. Lett.
, vol.313
, pp. 61-67
-
-
Ukita, S.1
Fujii, T.2
Hira, D.3
Nishiyama, T.4
Kawase, T.5
Migita, C.T.6
Furukawa, K.7
-
13
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
O. Emanuelsson, S. Brunak, G. von Heijne, and H. Nielsen Locating proteins in the cell using TargetP, SignalP and related tools Nat. Protoc. 2 2007 953 971
-
(2007)
Nat. Protoc.
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
14
-
-
0034097583
-
Functional analysis of conserved aspartate and histidine residues located around the type 2 copper site of copper-containing nitrite reductase
-
K. Kataoka, H. Furusawa, K. Takagi, K. Yamaguchi, and S. Suzuki Functional analysis of conserved aspartate and histidine residues located around the type 2 copper site of copper-containing nitrite reductase J. Biochem. (Tokyo) 127 2000 345 350
-
(2000)
J. Biochem. (Tokyo)
, vol.127
, pp. 345-350
-
-
Kataoka, K.1
Furusawa, H.2
Takagi, K.3
Yamaguchi, K.4
Suzuki, S.5
-
15
-
-
32144432437
-
The SWISS-MODEL Workspace. A web-based environment for protein structure homology modelling
-
K. Arnold, L. Bordoli, J. Kopp, and T. Schwede The SWISS-MODEL Workspace. A web-based environment for protein structure homology modelling Bioinformatics 22 2006 195 201
-
(2006)
Bioinformatics
, vol.22
, pp. 195-201
-
-
Arnold, K.1
Bordoli, L.2
Kopp, J.3
Schwede, T.4
-
16
-
-
0036306042
-
Crystal structure of the soluble domain of the major anaerobically induced outer membrane protein (AniA) from pathogenic Neisseria: A new class of copper-containing nitrite reductases
-
M.J. Boulanger, and M.E. Murphy Crystal structure of the soluble domain of the major anaerobically induced outer membrane protein (AniA) from pathogenic Neisseria: a new class of copper-containing nitrite reductases J. Mol. Biol. 315 2002 1111 1127
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 1111-1127
-
-
Boulanger, M.J.1
Murphy, M.E.2
-
17
-
-
0019457194
-
Purification and properties of a copper-containing nitrite reductase from a denitrifying bacterium, Alcaligenes faecalis strain S-6
-
T. Kakutani, H. Watanabe, K. Arima, and T. Beppu Purification and properties of a copper-containing nitrite reductase from a denitrifying bacterium, Alcaligenes faecalis strain S-6 J. Biochem. (Tokyo) 89 1981 453 461
-
(1981)
J. Biochem. (Tokyo)
, vol.89
, pp. 453-461
-
-
Kakutani, T.1
Watanabe, H.2
Arima, K.3
Beppu, T.4
-
18
-
-
0021478113
-
Characterization of nitrite reductase from a denitrifier, Alcaligenes Sp. NCIB 11015. A novel copper protein
-
M. Masuko, H. Iwasaki, T. Sakurai, S. Suzuki, and A. Nakahara Characterization of nitrite reductase from a denitrifier, Alcaligenes Sp. NCIB 11015. A novel copper protein J. Biochem. 96 1984 447 454
-
(1984)
J. Biochem.
, vol.96
, pp. 447-454
-
-
Masuko, M.1
Iwasaki, H.2
Sakurai, T.3
Suzuki, S.4
Nakahara, A.5
-
19
-
-
0031963258
-
Ammonification in Bacillus subtilis utilizing dissimilatory nitrite reductase is dependent on resDE
-
T. Hoffmann, N. Frankenberg, M. Marino, and D. Jahn Ammonification in Bacillus subtilis utilizing dissimilatory nitrite reductase is dependent on resDE J. Bacteriol. 180 1998 186 189
-
(1998)
J. Bacteriol.
, vol.180
, pp. 186-189
-
-
Hoffmann, T.1
Frankenberg, N.2
Marino, M.3
Jahn, D.4
-
20
-
-
0028985478
-
The copper-containing dissimilatory nitrite reductase involved in the denitrifying system of the fungus Fusarium oxysporum
-
M. Kobayashi, and H. Shoun The copper-containing dissimilatory nitrite reductase involved in the denitrifying system of the fungus Fusarium oxysporum J. Biol. Chem. 270 1995 4146 4151
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 4146-4151
-
-
Kobayashi, M.1
Shoun, H.2
-
21
-
-
17944403239
-
Structure-function relationships of copper-containing nitrite reductases
-
S. Suzuki, K. Kataoka, K. Yamaguchi, T. Inoue, and Y. Kai Structure-function relationships of copper-containing nitrite reductases Coord. Chem. Rev. 190-192 1999 245 265
-
(1999)
Coord. Chem. Rev.
, vol.190-192
, pp. 245-265
-
-
Suzuki, S.1
Kataoka, K.2
Yamaguchi, K.3
Inoue, T.4
Kai, Y.5
-
22
-
-
84857917046
-
Gating mechanisms for biological electron transfer: Integrating structure with biophysics reveals the nature of redox control in cytochrome P450 reductase and copper-dependent nitrite reductase
-
N.G. Leferink, C.R. Pudney, S. Brenner, D.J. Heyes, R.R. Eady, S. Samar Hasnain, S. Hay, S.E. Rigby, and N.S. Scrutton Gating mechanisms for biological electron transfer: Integrating structure with biophysics reveals the nature of redox control in cytochrome P450 reductase and copper-dependent nitrite reductase FEBS Lett. 586 2012 578 584
-
(2012)
FEBS Lett.
, vol.586
, pp. 578-584
-
-
Leferink, N.G.1
Pudney, C.R.2
Brenner, S.3
Heyes, D.J.4
Eady, R.R.5
Samar Hasnain, S.6
Hay, S.7
Rigby, S.E.8
Scrutton, N.S.9
-
23
-
-
70449116515
-
Structural basis of inter-protein electron transfer for nitrite reduction in denitrification
-
M. Nojiri, H. Koteishi, T. Nakagami, K. Kobayashi, T. Inoue, K. Yamaguchi, and S. Suzuki Structural basis of inter-protein electron transfer for nitrite reduction in denitrification Nature 462 2009 117 120
-
(2009)
Nature
, vol.462
, pp. 117-120
-
-
Nojiri, M.1
Koteishi, H.2
Nakagami, T.3
Kobayashi, K.4
Inoue, T.5
Yamaguchi, K.6
Suzuki, S.7
-
24
-
-
0242668714
-
Reconstitution of the type-1 active site of the H145G/A variants of nitrite reductase by ligand insertion
-
H.J. Wijma, M.J. Boulanger, A. Molon, M. Fittipaldi, M. Huber, M.E. Murphy, M.P. Verbeet, and G.W. Canters Reconstitution of the type-1 active site of the H145G/A variants of nitrite reductase by ligand insertion Biochemistry 42 2003 4075 4083
-
(2003)
Biochemistry
, vol.42
, pp. 4075-4083
-
-
Wijma, H.J.1
Boulanger, M.J.2
Molon, A.3
Fittipaldi, M.4
Huber, M.5
Murphy, M.E.6
Verbeet, M.P.7
Canters, G.W.8
-
25
-
-
1542378734
-
Electronic structures of metal sites in proteins and models: Contributions to function in blue copper proteins
-
E.I. Solomon, R.K. Szilagyi, S. DeBeer George, and L. Basumallick Electronic structures of metal sites in proteins and models: contributions to function in blue copper proteins Chem. Rev. 104 2004 419 458
-
(2004)
Chem. Rev.
, vol.104
, pp. 419-458
-
-
Solomon, E.I.1
Szilagyi, R.K.2
Debeer George, S.3
Basumallick, L.4
-
26
-
-
0030920834
-
PH-dependance for binding a single nitrite ion to each type-2 copper center in the copper-containing nitrite reductase of Alcaligenes xylosoxidans
-
Z.H.L. Abraham, B.E. Smith, B.D. Howes, D.J. Lowe, and R.R. Eady PH-dependance for binding a single nitrite ion to each type-2 copper center in the copper-containing nitrite reductase of Alcaligenes xylosoxidans Biochem. J. 324 1997 511 516
-
(1997)
Biochem. J.
, vol.324
, pp. 511-516
-
-
Abraham, Z.H.L.1
Smith, B.E.2
Howes, B.D.3
Lowe, D.J.4
Eady, R.R.5
-
27
-
-
0030599129
-
Site-directed mutagenesis of azurin from Pseudomonas aeruginosa enhances the formation of an electron-transfer complex with a copper-containing nitrite reductase from Alcaligenes faecalis S-6
-
M. Kukimoto, M. Nishiyama, M. Tanokura, M.E. Murphy, E.T. Adman, and S. Horinouchi Site-directed mutagenesis of azurin from Pseudomonas aeruginosa enhances the formation of an electron-transfer complex with a copper-containing nitrite reductase from Alcaligenes faecalis S-6 FEBS Lett. 394 1996 87 90
-
(1996)
FEBS Lett.
, vol.394
, pp. 87-90
-
-
Kukimoto, M.1
Nishiyama, M.2
Tanokura, M.3
Murphy, M.E.4
Adman, E.T.5
Horinouchi, S.6
-
28
-
-
0028958832
-
Identification of interaction site of pseudoazurin with its redox partner, copper-containing nitrite reductase from Alcaligenes faecalis S-6
-
M. Kukimoto, M. Nishiyama, T. Ohnuki, S. Turley, E.T. Adman, S. Horinouchi, and T. Beppu Identification of interaction site of pseudoazurin with its redox partner, copper-containing nitrite reductase from Alcaligenes faecalis S-6 Protein Eng. 8 1995 153 158
-
(1995)
Protein Eng.
, vol.8
, pp. 153-158
-
-
Kukimoto, M.1
Nishiyama, M.2
Ohnuki, T.3
Turley, S.4
Adman, E.T.5
Horinouchi, S.6
Beppu, T.7
-
29
-
-
24744461441
-
Pseudoazurin-nitrite reductase interactions
-
A. Impagliazzo, L. Krippahl, and M. Ubbink Pseudoazurin-nitrite reductase interactions ChemBioChem 6 2005 1648 1653
-
(2005)
ChemBioChem
, vol.6
, pp. 1648-1653
-
-
Impagliazzo, A.1
Krippahl, L.2
Ubbink, M.3
-
30
-
-
37549050579
-
Conformation of pseudoazurin in the 152 kDa electron transfer complex with nitrite reductase determined by paramagnetic NMR
-
M.D. Vlasie, R. Fernandez-Busnadiego, M. Prudencio, and M. Ubbink Conformation of pseudoazurin in the 152 kDa electron transfer complex with nitrite reductase determined by paramagnetic NMR J. Mol. Biol. 375 2008 1405 1415
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 1405-1415
-
-
Vlasie, M.D.1
Fernandez-Busnadiego, R.2
Prudencio, M.3
Ubbink, M.4
-
31
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
|