Linking genetic assignment tests with telemetry enhances understanding of spawning migration and homing in sea trout Salmo trutta L.

Hydrobiologia

Volumn 691, Issue 1, 2012, Pages 123-134

  Östergren, Johan ^a   Nilsson, Jan ^a   Lundqvist, Hans ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Genetic assignment test; Microsatellite DNA; Salmo trutta; Straying; Telemetry

Indexed keywords

CONSERVATION MANAGEMENT; DISPERSAL; FREQUENCY ANALYSIS; GENETIC ANALYSIS; GENETIC DIFFERENTIATION; GENETIC MARKER; HABITAT USE; HOMING BEHAVIOR; MIGRATION; MIGRATORY BEHAVIOR; MOLECULAR ANALYSIS; REPRODUCTIVE BEHAVIOR; SALMONID; SPAWNING; TELEMETRY;

SWEDEN;

ANIMALIA; SALMO TRUTTA; SALMONIDAE;

EID: 84861590693     PISSN: 00188158     EISSN: 15735117     Source Type: Journal    
DOI: 10.1007/s10750-012-1063-7     Document Type: Article

References (51)

1. Calles, E. O. & L. A. Greenberg, 2005. Evaluation of nature-like fishways for re-establishing connectivity in fragmented salmonid populations in the River Eman. River Research and Applications 21: 951-960.
2. Cooke, S. J., E. B. Thorstad & S. G. Hinch, 2004. Activity and energetics of free-swimming fish: insights from electromyogram telemetry. Fish and Fisheries 5: 21-52.
3. Cooke, S. J., S. G. Hinch, A. P. Farrell, D. A. Patterson, K. Miller-Saunders, D. W. Welch, M. R. Donaldson, K. C. Hanson, G. T. Crossin, M. T. Mathes, A. G. Lotto, K. A. Hruska, I. C. Olsson, G. N. Wagner, R. Thomson, R. Hourston, K. K. English, S. Larsson, J. M. Shrimpton & G. van der Kraak, 2008. Developing a mechanistic understanding of fish migrations by linking telemetry with physiology, behavior, genomics and experimental biology: an interdisciplinary case study on adult Fraser River sockeye salmon. Fisheries 33: 321-338.
4. Corley-Smith, G. E., L. Wennerberg, J. A. Schembri, C. J. Lim, K. L. Cooper & B. P. Brandhorst, 2005. Assignment of sockeye salmon (Oncorhynchus nerka) to spawning sites using DNA markers. Marine Biotechnology 7: 440-448.
5. Cornuet, J. M., S. Piry, G. Luikart, A. Estoup & M. Solignac, 1999. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 153: 1989-2000.
6. D'Amelio, S., J. Mucha, R. Mackereth & C. C. Wilson, 2008. Tracking coaster brook trout to their sources: combining telemetry and genetic profiles to determine source populations. North American Journal of Fisheries Management 28: 1343-1349.
7. Degerman, E., P. Nyberg & B. Sers, 2001. Havsöringens ekologi. Finfo 2001: 10. National Board of Fisheries, Stockholm: 1-122.
8. Efron, B., 1983. Estimating the error rate of a prediction rule-improvement on cross-validation. Journal of the American Statistical Association 78: 316-331.
9. n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). Heredity 71: 488-496.
10. Finstad, A. G., F. Okland, E. B. Thorstad & T. G. Heggberget, 2005. Comparing upriver spawning migration of Atlantic salmon Salmo salar and sea trout Salmo trutta. Journal of Fish Biology 67: 919-930.
11. Hansen, M. M., E. Kenchington & E. E. Nielsen, 2001. Assigning individual fish to populations using microsatellite DNA markers. Fish and Fisheries 2: 93-112.
12. Hansen, M. M., D. J. Fraser, K. Meier & K. L. D. Mensberg, 2009. Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines. Molecular Ecology 18: 2549-2562.
13. Hedger, R. D., D. Hatin, J. J. Dodson, F. Martin, D. Fournier, F. Caron & F. G. Whoriskey, 2009. Migration and swimming depth of Atlantic salmon kelts Salmo salar in coastal zone and marine habitats. Marine Ecology-Progress Series 392: 179-192.
14. Hilborn, R., T. P. Quinn, D. E. Schindler & D. E. Rogers, 2003. Biocomplexity and fisheries sustainability. Proceedings of the National Academy of Sciences of the United States of America 100: 6564-6568.
15. ICES, 2006. Report of the Baltic Salmon and Trout Assessment Working Group (WGBAST). ICES Headquarters, Copenhagen.
16. Jepsen, N., E. E. Nielsen & M. Deacon, 2005. Linking individual migratory behaviour of Atlantic salmon to their genetic origin. In Spedicato, M. T., G. Lembo, G. Marmulla (eds), Aquatic telemetry: advances and applications. Proceedings of the Fifth Conference of Fish Telemetry held in Europe, Ustica, Italy, 9-13 June, 2003. FAO/COISPA, Rome: 295.
17. Jokikokko, E., 2002. Migration of wild and reared Atlantic salmon (Salmo salar L.) in the river Simojoki, northern Finland. Fisheries Research 58: 15-23.
18. Jonsson, S., 2001. Stocking of brown trout (Salmo trutta L.): factors affecting survival and growth. Doctoral Thesis, Department of Aquaculture, Swedish University of Agricultural Sciences, Umeå.
19. Jonsson, B., N. Jonsson & L. P. Hansen, 1990. Does juvenile experience affect migration and spawning of adult Atlantic salmon? Behaviour Ecology and Sociobiology 26: 225-230.
20. Jonsson, B., N. Jonsson & L. P. Hansen, 2003. Atlantic salmon straying from the River Imsa. Journal of Fish Biology 62: 641-657.
21. Koljonen, M. L., 2006. Annual changes in the proportions of wild and hatchery Atlantic salmon (Salmo salar) caught in the Baltic Sea. ICES Journal of Marine Science 63: 1274-1285.
22. Lundqvist, H., P. Rivinoja, K. Leonardsson & S. McKinnell, 2008. Upstream passage problems for wild Atlantic salmon (Salmo salar L.) in a regulated river and its effect on the population. Hydrobiologia 602: 111-127.
23. Nilsson, J., J. Östergren, H. Lundqvist & U. Carlsson, 2008. Genetic assessment of Atlantic salmon Salmo salar and sea trout Salmo trutta stocking in a Baltic Sea river. Journal of Fish Biology 73: 1201-1215.
24. Nordeng, H. & P. Bratland, 2006. Homing experiments with parr, smolt and residents of anadromous Arctic char Salvelinus alpinus and brown trout Salmo trutta: transplantation between neighbouring river systems. Ecology of Freshwater Fish 15: 488-499.
25. O'Reilly, P. T., L. C. Hamilton, S. K. McConnell & J. M. Wright, 1996. Rapid analysis of genetic variation in Atlantic salmon (Salmo salar) by PCR multiplexing of dinucleotide and tetranucleotide microsatellites. Canadian Journal of Fisheries and Aquatic Science 53: 2292-2298.
26. Okland, F., J. Erkinaro, K. Moen, E. Niemelae, P. Fiske, R. S. McKinley & E. B. Thorstad, 2001. Return migration of Atlantic salmon in the River Tana: phases of migratory behaviour. Journal of Fish Biology 59: 862-874.
27. Östergren, J. & J. Nilsson, 2012. Importance of life-history and landscape characteristics for genetic structure and genetic diversity of brown trout (Salmo trutta L.). Ecology of Freshwater Fish 21: 119-133.
28. Östergren, J. & P. Rivinoja, 2008. Overwintering and downstream migration of sea trout (Salmo trutta L.) kelts under regulated flows-northern Sweden. River Research and Applications 24: 551-563.
29. Östergren, J., H. Lundqvist & J. Nilsson, 2011. High variability in spawning migration of sea trout Salmo trutta L. in two northern Swedish rivers. Fisheries Management and Ecology 18: 72-82.
30. Paetkau, D., W. Calvert, I. Stirling & C. Strobeck, 1995. Microsatellite analysis of population-structure in Canadian polar bears. Molecular Ecology 4: 347-354.
31. Palm, S., J. Dannewitz, T. Jarvi, E. Petersson, T. Prestegaard & N. Ryman, 2003. Lack of molecular genetic divergence between sea-ranched and wild sea trout (Salmo trutta). Molecular Ecology 12: 2057-2071.
32. Palm, D., F. Lepori & E. Brännäs, 2010. Influence of habitat restoration on post-emergence displacement of brown trout (Salmo trutta L.): a case study in a Northern Swedish stream. River Research and Applications 26: 742-750.
33. Pella, J. J. & M. Masuda, 2001. Bayesian methods for analysis of stock mixtures from genetic characters. Fisheries Bulletin 99: 153-170.
34. Piry, S., A. Alapetite, J. M. Cornuet, D. Paetkau, L. Baudouin & A. Estoup, 2004. GENECLASS2: a software for genetic assignment and first-generation migrant detection. Journal of Heredity 95: 536-539.
35. Primmer, C. R., M. T. Koskinen & J. Piironen, 2000. The one that did not get away: individual assignment using microsatellite data detects a case of fishing competition fraud. Proceedings of the Royal Society of London Series B-Biological Sciences 267: 1699-1704.
36. Pritchard, J. K., M. Stephens & P. Donnelly, 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
37. Quinn, T. P., 1993. A review of homing and straying of wild and hatchery produced salmon. Fisheries Research 18: 29-44.
38. Quinn, T. P., 2005. The Behavior and Ecology of Pacific Salmon and Trout. University of Washington Press, Seattle.
39. Rannala, B. & J. L. Mountain, 1997. Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences of the United States of America 94: 9197-9201.
40. Raymond, M. & F. Rousset, 1995. An exact test for population differentiation. Evolution 49: 1280-1283.
41. Rice, W. R., 1989. Analyzing tables of statistical tests. Evolution 43: 223-225.
42. Rivinoja, P., J. Östergren, K. Leonardsson, H. Lundqvist, J. Kiviloog, L. Bergdahl & L. Brydsten, 2004. Downstream migration of Salmo salar and S. trutta smolts in two regulated northern Swedish rivers. In Fifth International Symposium on Ecohydraulics, Madrid.
43. Scruton, D. A., R. K. Booth, C. J. Pennell, F. Cubitt, R. S. McKinley & K. D. Clarke, 2007. Conventional and EMG telemetry studies of upstream migration and tailrace attraction of adult Atlantic salmon at a hydroelectric installation on the Exploits River, Newfoundland, Canada. Hydrobiologia 582: 67-79.
44. Slettan, A., I. Olsaker & O. Lie, 1995. Atlantic salmon, Salmo salar, microsatellites at the SSOSL25, SSOSL85, SSOSL311, SSOL417 loci. Animal Genetics 26: 281-282.
45. Slettan, A., I. Olsaker & O. Lie, 1996. Polymorphic Atlantic salmon, Salmo salar L., microsatellites at the SSOSL438, SSOSL439 and SSOSL444 loci. Animal Genetics 27: 57-64.
46. Spedicato, M. T., T. Lembo & G. Marmulla, 2005. Aquatic telemetry: advances and applications. In Proceedings of the Fifth Conference of Fish Telemetry held in Europe, Utica, Italy, 9-13 June, 2003. FAO/COISPA, Rome: 295.
47. Stabell, O. B., 1984. Homing and olfaction in salmonids: a critical review with special reference to the Atlantic salmon. Biological reviews of the Cambridge philosophical society 59: 333-388.
48. Stuart, T. A., 1957. The migrations and homing behaviour of brown trout (Salmo trutta L.). Freshwater and Salmon Fisheries Research 18: 1-27.
49. Thorstad, E. B., F. Okland & B. Finstad, 2000. Effects of telemetry transmitters on swimming performance of adult Atlantic salmon. Journal of Fish Biology 57: 531-535.
50. Thorstad, E. B., F. Okland, K. Aarestrup & T. G. Heggberget, 2008. Factors affecting the within-river spawning migration of Atlantic salmon, with emphasis on human impacts. Reviews in Fish Biology and Fisheries 18: 345-371.
51. Weir, B. S. & C. C. Cockerham, 1984. Estimating F-statistics for the analysis of population-structure. Evolution 38: 1358-1370.