Nomenclature report on rice WRKY's - conflict regarding gene names and its solution

Rice

Volumn 5, Issue 1, 2012, Pages 1-3

  Shen, Qingxi J ^a   Yu, Diqiu ^b   Jeon, Jong Seong ^c   Piffanelli, Pietro ^d   Abbruscato, Pamela ^d   Guo, Ze Jian ^e   Zhang, Yuanji ^f   Itoh, Takeshi ^g   Lee, Sung S ^g   Buell, C Robin ^h   Nagato, Yasuo ⁱ   McCouch, Susan ^j   Yano, Masahiro ^g   Wang, Guo liang ^k   Jena, Kshirod K ^l   Xiong, Lizhong ^m   Meyers, Blake ⁿ   Jaiswal, Pankaj ^o   Yamazaki, Yukiko ^p  

^a UNIVERSITY OF NEVADA   (United States)

^b CHINESE ACADEMY OF SCIENCES   (China)

^c Kyung Hee University   (South Korea)

^d PARCO TECNOLOGICO PADANO   (Italy)

^e CHINA AGRICULTURAL UNIVERSITY   (China)

^f MONSANTO COMPANY   (United States)

^g NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^h MICHIGAN STATE UNIVERSITY   (United States)

ⁱ UNIVERSITY OF TOKYO   (Japan)

^j Cornell University ^*  (United States)

^k OHIO STATE UNIVERSITY   (United States)

^l INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

^m HUAZHONG AGRICULTURAL UNIVERSITY   (China)

ⁿ UNIVERSITY OF DELAWARE   (United States)

^o OREGON STATE UNIVERSITY   (United States)

^p NATIONAL INSTITUTE OF GENETICS   (Japan)

more..

Author keywords

Family gene; Gene nomenclature; Rice; WRKY

Indexed keywords

EID: 84861474485     PISSN: 19398425     EISSN: 19398433     Source Type: Journal    
DOI: 10.1186/1939-8433-5-3     Document Type: Article

References (16)

1. Berri S, Abbruscato P, Faivre-Rampant O, Brasileiro AC, Fumasoni I, Satoh K, Kikuchi S, Mizzi L, Morandini P, Pè ME, Piffanelli P (2009) Characterization of WRKY co-regulatory networks in rice and Arabidopsis. BMC Plant Biol 9:120
2. CGSNL (2008) Gene Nomenclature System for Rice. Rice 1:72-84
3. Chen L, Song Y, Li S, Zhang L, Zou C, Yu D (2012) The role of WRKY transcription factors in plant abiotic stresses. Biochim Biophys Acta. doi:10.1016/j.bbagrm.2011.09.002
4. Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M., et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296(5565):92-100
5. IRGSP (2005) The map-based sequence of the rice genome. Nature 436(7052):793-800
6. Qiu Y, Jing S, Fu J, Li L, Yu D (2004) Cloning and analysis of expression profile of 13 WRKY genes in rice. Chinese Science Bulletin 49(20):2159-2168
7. Ross CA, Liu Y, Shen QJ (2007) The WRKY Gene Family in Rice (Oryza sativa). J Int Plant Biol 49(6):827-842
8. Rushton PJ, Somssich IE, Ringler P, Shen QJ (2010) WRKY transcription factors. Trends in Plant Science 15(5):247-258
9. Ryu HS, Han M, Lee SK, Cho JI, Ryoo N, Heu S, Lee YH, Bhoo SH, Wang GL, Hahn TR, Jeon JS (2006) A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response. Plant Cell Rep 25(8):836-47
10. Wu KL, Guo ZJ, Wang HH, Li J (2005) The WRKY family of transcription factors in rice and Arabidopsis and their origins. DNA Res 12(1):9-26
11. Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ (2005) Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiol 137(1):176-89
12. Yu J, Hu S, Wang J, Wong GK, Li S, Liu B., et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296(5565):79-92
13. Yuan Q, Ouyang S, Liu J, Suh B, Cheung F, Sultana R, Lee D, Quackenbush J, Buell CR (2003) The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. Nucleic Acids Res 31(1):229-33
14. Yuan Q, Ouyang S, Wang A, Zhu W, Maiti R, Lin H, Hamilton J, Haas B, Sultana R, Cheung F, Wortman J, Buell CR (2005) The institute for genomic research Osa1 rice genome annotation database. Plant Physiol 138(1):18-26
15. Zhang Y, Wang L (2005) The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol Biol 5:1
16. Zhang ZL, Xie Z, Zou X, Casaretto J, Ho TH, Shen QJ (2004) A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol 134(4):1500-13