메뉴 건너뛰기




Volumn 7, Issue 5, 2012, Pages

Using prior information from the medical literature in GWAS of oral cancer identifies novel susceptibility variant on Chromosome 4 - the AdAPT method

(51)  Johansson, Mattias a   Roberts, Angus b   Chen, Dan a   Li, Yaoyong c   Delahaye Sourdeix, Manon a   Aswani, Niraj b   Greenwood, Mark A b   Benhamou, Simone d,e   Lagiou, Pagona f   Holcátová, Ivana g   Richiardi, Lorenzo h   Kjaerheim, Kristina i   Agudo, Antonio j   Castellsagué, Xavier j,k   Macfarlane, Tatiana V l   Barzan, Luigi m   Canova, Cristina n,o   Thakker, Nalin S p   Conway, David I q   Znaor, Ariana r   more..

d INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BAYES THEOREM; CANCER SUSCEPTIBILITY; CHROMOSOME 4; CONTROLLED STUDY; GENETIC ASSOCIATION; HUMAN; LUNG CANCER; MEDICAL INFORMATION; MEDICAL LITERATURE; MOUTH CANCER; PHENOTYPE; PROBABILITY; SINGLE NUCLEOTIDE POLYMORPHISM; VALIDATION PROCESS;

EID: 84861470791     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036888     Document Type: Article
Times cited : (15)

References (31)
  • 1
    • 77953724090 scopus 로고    scopus 로고
    • A compendium of genome-wide associations for cancer: critical synopsis and reappraisal
    • Ioannidis JP, Castaldi P, Evangelou E, (2010) A compendium of genome-wide associations for cancer: critical synopsis and reappraisal. J Natl Cancer Inst 102: 846-858.
    • (2010) J Natl Cancer Inst , vol.102 , pp. 846-858
    • Ioannidis, J.P.1    Castaldi, P.2    Evangelou, E.3
  • 2
    • 77951497455 scopus 로고    scopus 로고
    • Methods for investigating gene-environment interactions in candidate pathway and genome-wide association studies
    • Thomas D, (2010) Methods for investigating gene-environment interactions in candidate pathway and genome-wide association studies. Annu Rev Public Health 31: 21-36.
    • (2010) Annu Rev Public Health , vol.31 , pp. 21-36
    • Thomas, D.1
  • 3
    • 44949262832 scopus 로고    scopus 로고
    • Reporting and interpretation in genome-wide association studies
    • Wakefield J, (2008) Reporting and interpretation in genome-wide association studies. Int J Epidemiol 37: 641-653.
    • (2008) Int J Epidemiol , vol.37 , pp. 641-653
    • Wakefield, J.1
  • 4
    • 67249117049 scopus 로고    scopus 로고
    • Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
    • Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, et al. (2009) Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci U S A 106: 9362-9367.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 9362-9367
    • Hindorff, L.A.1    Sethupathy, P.2    Junkins, H.A.3    Ramos, E.M.4    Mehta, J.P.5
  • 5
    • 34547782270 scopus 로고    scopus 로고
    • A Bayesian measure of the probability of false discovery in genetic epidemiology studies
    • Wakefield J, (2007) A Bayesian measure of the probability of false discovery in genetic epidemiology studies. Am J Hum Genet 81: 208-227.
    • (2007) Am J Hum Genet , vol.81 , pp. 208-227
    • Wakefield, J.1
  • 6
    • 79953761295 scopus 로고    scopus 로고
    • A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium
    • McKay JD, Truong T, Gaborieau V, Chabrier A, Chuang SC, et al. (2011) A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium. PLoS Genet 7: e1001333.
    • (2011) PLoS Genet , vol.7
    • McKay, J.D.1    Truong, T.2    Gaborieau, V.3    Chabrier, A.4    Chuang, S.C.5
  • 7
    • 77951766653 scopus 로고    scopus 로고
    • Association between a 15q25 gene variant, smoking quantity and tobacco-related cancers among 17 000 individuals
    • Lips EH, Gaborieau V, McKay JD, Chabrier A, Hung RJ, et al. (2010) Association between a 15q25 gene variant, smoking quantity and tobacco-related cancers among 17 000 individuals. Int J Epidemiol 39: 563-577.
    • (2010) Int J Epidemiol , vol.39 , pp. 563-577
    • Lips, E.H.1    Gaborieau, V.2    McKay, J.D.3    Chabrier, A.4    Hung, R.J.5
  • 8
    • 44349179705 scopus 로고    scopus 로고
    • Multiple ADH genes are associated with upper aerodigestive cancers
    • Hashibe M, McKay JD, Curado MP, Oliveira JC, Koifman S, et al. (2008) Multiple ADH genes are associated with upper aerodigestive cancers. Nat Genet 40: 707-709.
    • (2008) Nat Genet , vol.40 , pp. 707-709
    • Hashibe, M.1    McKay, J.D.2    Curado, M.P.3    Oliveira, J.C.4    Koifman, S.5
  • 10
  • 11
    • 66049114148 scopus 로고    scopus 로고
    • Bayes factors for genome-wide association studies: comparison with P-values
    • Wakefield J, (2009) Bayes factors for genome-wide association studies: comparison with P-values. Genet Epidemiol 33: 79-86.
    • (2009) Genet Epidemiol , vol.33 , pp. 79-86
    • Wakefield, J.1
  • 12
    • 41649103682 scopus 로고    scopus 로고
    • A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25
    • Hung RJ, McKay JD, Gaborieau V, Boffetta P, Hashibe M, et al. (2008) A susceptibility locus for lung cancer maps to nicotinic acetylcholine receptor subunit genes on 15q25. Nature 452: 633-637.
    • (2008) Nature , vol.452 , pp. 633-637
    • Hung, R.J.1    McKay, J.D.2    Gaborieau, V.3    Boffetta, P.4    Hashibe, M.5
  • 13
    • 42649091460 scopus 로고    scopus 로고
    • Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1
    • Amos CI, Wu X, Broderick P, Gorlov IP, Gu J, et al. (2008) Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1. Nat Genet 40: 616-622.
    • (2008) Nat Genet , vol.40 , pp. 616-622
    • Amos, C.I.1    Wu, X.2    Broderick, P.3    Gorlov, I.P.4    Gu, J.5
  • 14
    • 77954715678 scopus 로고    scopus 로고
    • Replication of lung cancer susceptibility loci at chromosomes 15q25, 5p15, and 6p21: a pooled analysis from the International Lung Cancer Consortium
    • Truong T, Hung RJ, Amos CI, Wu X, Bickeboller H, et al. (2010) Replication of lung cancer susceptibility loci at chromosomes 15q25, 5p15, and 6p21: a pooled analysis from the International Lung Cancer Consortium. J Natl Cancer Inst 102: 959-971.
    • (2010) J Natl Cancer Inst , vol.102 , pp. 959-971
    • Truong, T.1    Hung, R.J.2    Amos, C.I.3    Wu, X.4    Bickeboller, H.5
  • 15
    • 9144228670 scopus 로고    scopus 로고
    • Pooled analysis of alcohol dehydrogenase genotypes and head and neck cancer: a HuGE review
    • Brennan P, Lewis S, Hashibe M, Bell DA, Boffetta P, et al. (2004) Pooled analysis of alcohol dehydrogenase genotypes and head and neck cancer: a HuGE review. Am J Epidemiol 159: 1-16.
    • (2004) Am J Epidemiol , vol.159 , pp. 1-16
    • Brennan, P.1    Lewis, S.2    Hashibe, M.3    Bell, D.A.4    Boffetta, P.5
  • 16
    • 67149095078 scopus 로고    scopus 로고
    • Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip
    • Spencer CC, Su Z, Donnelly P, Marchini J, (2009) Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. PLoS Genet 5: e1000477.
    • (2009) PLoS Genet , vol.5
    • Spencer, C.C.1    Su, Z.2    Donnelly, P.3    Marchini, J.4
  • 17
    • 67651205715 scopus 로고    scopus 로고
    • Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions
    • Raychaudhuri S, Plenge RM, Rossin EJ, Ng AC, Purcell SM, et al. (2009) Identifying relationships among genomic disease regions: predicting genes at pathogenic SNP associations and rare deletions. PLoS Genet 5: e1000534.
    • (2009) PLoS Genet , vol.5
    • Raychaudhuri, S.1    Plenge, R.M.2    Rossin, E.J.3    Ng, A.C.4    Purcell, S.M.5
  • 18
    • 77951439152 scopus 로고    scopus 로고
    • Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS
    • Nicolae DL, Gamazon E, Zhang W, Duan S, Dolan ME, et al. (2010) Trait-associated SNPs are more likely to be eQTLs: annotation to enhance discovery from GWAS. PLoS Genet 6: e1000888.
    • (2010) PLoS Genet , vol.6
    • Nicolae, D.L.1    Gamazon, E.2    Zhang, W.3    Duan, S.4    Dolan, M.E.5
  • 20
    • 84872499697 scopus 로고    scopus 로고
    • UMLS® Reference Manual, Bethesda, National Library of Medicine (US)
    • UMLS® Reference Manual (2009) Bethesda National Library of Medicine (US).
    • (2009)
  • 21
    • 77955287813 scopus 로고    scopus 로고
    • An overview of MetaMap: historical perspective and recent advances
    • Aronson AR, Lang FM, (2010) An overview of MetaMap: historical perspective and recent advances. J Am Med Inform Assoc 17: 229-236.
    • (2010) J Am Med Inform Assoc , vol.17 , pp. 229-236
    • Aronson, A.R.1    Lang, F.M.2
  • 22
    • 84872493299 scopus 로고    scopus 로고
    • Information Extraction and Semantic Annotation for Multi-Paradigm Information Management
    • Springer Berlin Heidelberg, In: Croft WB, editors
    • Cunningham H, Tablan V, Roberts I, Greenwood MA, Aswani N, et al. (2011) Information Extraction and Semantic Annotation for Multi-Paradigm Information Management. Current Challenges in Patent Information Retrieval. In: Croft WB, editors. Springer Berlin Heidelberg pp. 307-327.
    • (2011) Current Challenges in Patent Information , pp. 307-327
    • Cunningham, H.1    Tablan, V.2    Roberts, I.3    Greenwood, M.A.4    Aswani, N.5
  • 23
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: a tool set for whole-genome association and population-based linkage analyses
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MA, et al. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 81: 559-575.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.5
  • 25
    • 58149260130 scopus 로고    scopus 로고
    • Alcohol-related cancers and genetic susceptibility in Europe: the ARCAGE project: study samples and data collection
    • Lagiou P, Georgila C, Minaki P, Ahrens W, Pohlabeln H, et al. (2009) Alcohol-related cancers and genetic susceptibility in Europe: the ARCAGE project: study samples and data collection. Eur J Cancer Prev 18: 76-84.
    • (2009) Eur J Cancer Prev , vol.18 , pp. 76-84
    • Lagiou, P.1    Georgila, C.2    Minaki, P.3    Ahrens, W.4    Pohlabeln, H.5
  • 26
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • Wellcome Trust Case Control Consortium
    • Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447: 661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 27
    • 0346258152 scopus 로고    scopus 로고
    • Human papillomavirus and oral cancer: the International Agency for Research on Cancer multicenter study
    • Herrero R, Castellsague X, Pawlita M, Lissowska J, Kee F, et al. (2003) Human papillomavirus and oral cancer: the International Agency for Research on Cancer multicenter study. J Natl Cancer Inst 95: 1772-1783.
    • (2003) J Natl Cancer Inst , vol.95 , pp. 1772-1783
    • Herrero, R.1    Castellsague, X.2    Pawlita, M.3    Lissowska, J.4    Kee, F.5
  • 28
    • 68949216415 scopus 로고    scopus 로고
    • Enhancing epidemiologic research on head and neck cancer: INHANCE - The international head and neck cancer epidemiology consortium
    • Conway DI, Hashibe M, Boffetta P, Wunsch-Filho V, Muscat J, et al. (2009) Enhancing epidemiologic research on head and neck cancer: INHANCE- The international head and neck cancer epidemiology consortium. Oral Oncol 45: 743-746.
    • (2009) Oral Oncol , vol.45 , pp. 743-746
    • Conway, D.I.1    Hashibe, M.2    Boffetta, P.3    Wunsch-Filho, V.4    Muscat, J.5
  • 30
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 31
    • 49749122987 scopus 로고    scopus 로고
    • Population substructure and control selection in genome-wide association studies
    • Yu K, Wang Z, Li Q, Wacholder S, Hunter DJ, et al. (2008) Population substructure and control selection in genome-wide association studies. PLoS One 3: e2551.
    • (2008) PLoS One , vol.3
    • Yu, K.1    Wang, Z.2    Li, Q.3    Wacholder, S.4    Hunter, D.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.