-
1
-
-
0036343993
-
Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies
-
Bright JN, Shrivastava IH, Cordes FS, Sansom MSP (2002) Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies. Biopolymers 64:303-313.
-
(2002)
Biopolymers
, vol.64
, pp. 303-313
-
-
Bright, J.N.1
Shrivastava, I.H.2
Cordes, F.S.3
Sansom, M.S.P.4
-
2
-
-
0037174606
-
Beta2 adrenergic receptor activation. Modulation of the proline kink in transmembrane 6 by a rotamer toggle switch
-
Shi L, et al. (2002) Beta2 adrenergic receptor activation. Modulation of the proline kink in transmembrane 6 by a rotamer toggle switch. J Biol Chem 277:40989-409896.
-
(2002)
J Biol Chem
, vol.277
, pp. 40989-409896
-
-
Shi, L.1
-
3
-
-
0742288411
-
The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors
-
Yohannan S, Faham S, Yang D, Whitelegge JP, Bowie JU (2004) The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. Proc Natl Acad Sci USA 101:959-963.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 959-963
-
-
Yohannan, S.1
Faham, S.2
Yang, D.3
Whitelegge, J.P.4
Bowie, J.U.5
-
4
-
-
77955984919
-
Internally bridging water molecule in transmembrane alpha-helical kink
-
Miyano M, Ago H, Saino H, Hori T, Ida K (2010) Internally bridging water molecule in transmembrane alpha-helical kink. Curr Opin Struct Biol 20:456-463.
-
(2010)
Curr Opin Struct Biol
, vol.20
, pp. 456-463
-
-
Miyano, M.1
Ago, H.2
Saino, H.3
Hori, T.4
Ida, K.5
-
5
-
-
0036240805
-
A protein sequence that can encode native structure by disfavoring alternate conformations
-
Wigley WC, et al. (2002) A protein sequence that can encode native structure by disfavoring alternate conformations. Nat Struct Biol 9:381-388.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 381-388
-
-
Wigley, W.C.1
-
6
-
-
67349266230
-
Position of helical kinks in membrane protein crystal structures and the accuracy of computational prediction
-
Hall SE, Roberts K, Vaidehi N (2009) Position of helical kinks in membrane protein crystal structures and the accuracy of computational prediction. J Mol Graph Model 27:944-950.
-
(2009)
J Mol Graph Model
, vol.27
, pp. 944-950
-
-
Hall, S.E.1
Roberts, K.2
Vaidehi, N.3
-
7
-
-
78650702465
-
Improved helix and kink characterization in membrane proteins allows evaluation of kink sequence predictors
-
Langelaan DN, Wieczorek M, Blouin C, Rainey JK (2010) Improved helix and kink characterization in membrane proteins allows evaluation of kink sequence predictors. J Chem Inf Model 50:2213-2220.
-
(2010)
J Chem Inf Model
, vol.50
, pp. 2213-2220
-
-
Langelaan, D.N.1
Wieczorek, M.2
Blouin, C.3
Rainey, J.K.4
-
8
-
-
0031010621
-
A method for assessing the stability of a membrane protein
-
Lau FW, Bowie JU (1997) A method for assessing the stability of a membrane protein. Biochemistry 36:5884-5892.
-
(1997)
Biochemistry
, vol.36
, pp. 5884-5892
-
-
Lau, F.W.1
Bowie, J.U.2
-
9
-
-
0029112313
-
Forces and factors that contribute to the structural stability of membrane proteins
-
Haltia T, Freire E (1995) Forces and factors that contribute to the structural stability of membrane proteins. Biochim Biophys Acta 1241:295-322.
-
(1995)
Biochim Biophys Acta
, vol.1241
, pp. 295-322
-
-
Haltia, T.1
Freire, E.2
-
10
-
-
0242657348
-
Membrane protein folding: Beyond the two stage model
-
Engelman DM, et al. (2003) Membrane protein folding: beyond the two stage model. FEBS Lett 555:122-125.
-
(2003)
FEBS Lett
, vol.555
, pp. 122-125
-
-
Engelman, D.M.1
-
12
-
-
79551683006
-
Membrane protein folding: How important are hydrogen bonds?
-
Bowie JU (2011) Membrane protein folding: how important are hydrogen bonds? Curr Opin Struct Biol 21:42-49.
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 42-49
-
-
Bowie, J.U.1
-
13
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
White SH, Wimley WC (1999) Membrane protein folding and stability: Physical principles. Annu Rev Biophys Biomol Struct 28:319-365.
-
(1999)
Annu Rev Biophys Biomol Struct
, vol.28
, pp. 319-365
-
-
White, S.H.1
Wimley, W.C.2
-
14
-
-
0036343993
-
Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies
-
Bright JN, Shrivastava IH, Cordes FS, Sansom MSP (2002) Conformational dynamics of helix S6 from Shaker potassium channel: Simulation studies. Biopolymers 64:303-313.
-
(2002)
Biopolymers
, vol.64
, pp. 303-313
-
-
Bright, J.N.1
Shrivastava, I.H.2
Cordes, F.S.3
Sansom, M.S.P.4
-
15
-
-
58949104204
-
Helix dynamics in a membrane transport protein: Comparative simulations of the glycerol-3-phosphate transporter and its constituent helices
-
D'Rozario RSG, Sansom MSP (2008) Helix dynamics in a membrane transport protein: Comparative simulations of the glycerol-3-phosphate transporter and its constituent helices. Mol Membr Biol 25:571-583.
-
(2008)
Mol Membr Biol
, vol.25
, pp. 571-583
-
-
D'Rozario, R.S.G.1
Sansom, M.S.P.2
-
16
-
-
78049336297
-
Residue-specific side-chain packing determines the backbone dynamics of transmembrane model helices
-
Quint S, et al. (2010) Residue-specific side-chain packing determines the backbone dynamics of transmembrane model helices. Biophys J 99:2541-2549.
-
(2010)
Biophys J
, vol.99
, pp. 2541-2549
-
-
Quint, S.1
-
17
-
-
4143145333
-
Proline substitutions are not easily accommodated in a membrane protein
-
Yohannan S, et al. (2004) Proline substitutions are not easily accommodated in a membrane protein. J Mol Biol 341:1-6.
-
(2004)
J Mol Biol
, vol.341
, pp. 1-6
-
-
Yohannan, S.1
-
18
-
-
0036430199
-
Proline-induced distortions of transmembrane helices
-
Cordes FS, Bright JN, Sansom MSP (2002) Proline-induced distortions of transmembrane helices. J Mol Biol 323:951-960.
-
(2002)
J Mol Biol
, vol.323
, pp. 951-960
-
-
Cordes, F.S.1
Bright, J.N.2
Sansom, M.S.P.3
-
19
-
-
0344687314
-
Side-chain contributions to membrane protein structure and stability
-
Faham S, et al. (2004) Side-chain contributions to membrane protein structure and stability. J Mol Biol 335:297-305.
-
(2004)
J Mol Biol
, vol.335
, pp. 297-305
-
-
Faham, S.1
-
20
-
-
28444488355
-
Solving the membrane protein folding problem
-
Bowie JU (2005) Solving the membrane protein folding problem. Nature 438:581-589.
-
(2005)
Nature
, vol.438
, pp. 581-589
-
-
Bowie, J.U.1
-
21
-
-
0020490831
-
Denaturation and renaturation of bacteriorhodopsin in detergents and lipid-detergent mixtures
-
London E, Khorana HG (1982) Denaturation and renaturation of bacteriorhodopsin in detergents and lipid-detergent mixtures. J Biol Chem 257:7003-7011.
-
(1982)
J Biol Chem
, vol.257
, pp. 7003-7011
-
-
London, E.1
Khorana, H.G.2
-
22
-
-
84856853534
-
Secondary and tertiary structure of bacteriorhodopsin in the SDS denatured state
-
Available at Accessed January 18, 2012
-
Krishnamani V, Hegde BG, Langen R, Lanyi JK (2012) Secondary and tertiary structure of bacteriorhodopsin in the SDS denatured state. Biochemistry. Available at http://www.ncbi.nlm.nih.gov/pubmed/22242919. Accessed January 18, 2012.
-
(2012)
Biochemistry
-
-
Krishnamani, V.1
Hegde, B.G.2
Langen, R.3
Lanyi, J.K.4
-
23
-
-
0028039931
-
Three-dimensional structure of (1-71)bacterioopsin solubilized in methanol/chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy
-
Pervushin KV, Orekhov VYu, Popov AI, Musina LYu, Arseniev AS (1994) Three-dimensional structure of (1-71)bacterioopsin solubilized in methanol/chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy. Eur J Biochem 219:571-583.
-
(1994)
Eur J Biochem
, vol.219
, pp. 571-583
-
-
Pervushin, K.V.1
Orekhov, V.Yu.2
Popov, A.I.3
Musina, L.Yu.4
Arseniev, A.S.5
-
24
-
-
46249089993
-
Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins
-
Joh NH, et al. (2008) Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins. Nature 453:1266-1270.
-
(2008)
Nature
, vol.453
, pp. 1266-1270
-
-
Joh, N.H.1
-
25
-
-
79953701671
-
A survey of aspartate-phenylalanine and glutamate-phenylalanine interactions in the protein data bank: Searching for anion-π pairs
-
Philip V, et al. (2011) A survey of aspartate-phenylalanine and glutamate-phenylalanine interactions in the protein data bank: Searching for anion-π pairs. Biochemistry 50:2939-2950.
-
(2011)
Biochemistry
, vol.50
, pp. 2939-2950
-
-
Philip, V.1
-
26
-
-
0035895421
-
Non-[alpha]-helical elements modulate polytopic membrane protein architecture
-
Riek RP, Rigoutsos I, Novotny J, Graham RM (2001) Non-[alpha]-helical elements modulate polytopic membrane protein architecture. J Mol Biol 306:349-362.
-
(2001)
J Mol Biol
, vol.306
, pp. 349-362
-
-
Riek, R.P.1
Rigoutsos, I.2
Novotny, J.3
Graham, R.M.4
-
27
-
-
67249136876
-
Conformational dynamics of the inner pore helix of voltage-gated potassium channels
-
Choe S, Grabe M (2009) Conformational dynamics of the inner pore helix of voltage-gated potassium channels. J Chem Phys 130:215103.
-
(2009)
J Chem Phys
, vol.130
, pp. 215103
-
-
Choe, S.1
Grabe, M.2
-
28
-
-
61449172924
-
Conformational changes and slow dynamics through microsecond polarized atomistic molecular simulation of an integral Kv1.2 ion channel
-
Bjelkmar P, Niemelä PS, Vattulainen I, Lindahl E (2009) Conformational changes and slow dynamics through microsecond polarized atomistic molecular simulation of an integral Kv1.2 ion channel. PLoS Comput Biol 5:e1000289.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Bjelkmar, P.1
Niemelä, P.S.2
Vattulainen, I.3
Lindahl, E.4
-
29
-
-
77952700991
-
Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel
-
Khalili-Araghi F, et al. (2010) Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel. Biophys J 98:2189-2198.
-
(2010)
Biophys J
, vol.98
, pp. 2189-2198
-
-
Khalili-Araghi, F.1
-
30
-
-
0001108519
-
The molten helix: Effects of solvation on the.alpha- to 310-helical transition
-
Smythe ML, Huston SE, Marshall GR (1995) The molten helix: Effects of solvation on the.alpha- to 310-helical transition.. J Am Chem Soc 117:5445-5452.
-
(1995)
J Am Chem Soc
, vol.117
, pp. 5445-5452
-
-
Smythe, M.L.1
Huston, S.E.2
Marshall, G.R.3
-
31
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
33
-
-
79959336987
-
TMKink: A method to predict transmembrane helix kinks
-
Meruelo AD, Samish I, Bowie JU (2011) TMKink: A method to predict transmembrane helix kinks. Protein Sci 20:1256-1264.
-
(2011)
Protein Sci
, vol.20
, pp. 1256-1264
-
-
Meruelo, A.D.1
Samish, I.2
Bowie, J.U.3
-
35
-
-
0016376428
-
Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane
-
Oesterhelt D, Stoeckenius W (1974) Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol 31:667-678.
-
(1974)
Methods Enzymol
, vol.31
, pp. 667-678
-
-
Oesterhelt, D.1
Stoeckenius, W.2
-
36
-
-
84861450057
-
Thermodynamic stability of bacteriorhodopsin mutants measured relative to the bacterioopsin unfolded state
-
Available at Accessed November 17, 2011
-
Cao Z, Schlebach J, Park C, Bowie JU (2011) Thermodynamic stability of bacteriorhodopsin mutants measured relative to the bacterioopsin unfolded state. Biochimica Et Biophysica Acta. Available at http://www.ncbi.nlm.nih.gov/pubmed/ 21880269. Accessed November 17, 2011.
-
(2011)
Biochimica et Biophysica Acta
-
-
Cao, Z.1
Schlebach, J.2
Park, C.3
Bowie, J.U.4
-
37
-
-
0036301007
-
Bicelle crystallization: A new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure
-
Faham S, Bowie JU (2002) Bicelle crystallization: A new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure. J Mol Biol 316:1-6.
-
(2002)
J Mol Biol
, vol.316
, pp. 1-6
-
-
Faham, S.1
Bowie, J.U.2
-
38
-
-
14144250152
-
Crystallization of bacteriorhodopsin from bicelle formulations at room temperature
-
Faham S, et al. (2005) Crystallization of bacteriorhodopsin from bicelle formulations at room temperature. Protein Sci 14:836-840.
-
(2005)
Protein Sci
, vol.14
, pp. 836-840
-
-
Faham, S.1
-
39
-
-
0031059866
-
-
Academic Press Available at
-
Otwinowski Z, Minor W (1997) Macromolecular Crystallography Part A (Academic Press) pp 307-326. Available at http://www.sciencedirect.com/science/ article/pii/S007668799776066X. Accessed July 20, 2011.
-
(1997)
Macromolecular Crystallography Part A
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
40
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50:760-763.
-
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 760-763
-
-
-
41
-
-
37049014272
-
Version 1.2 of the crystallography and NMR system
-
Brunger AT (2007) Version 1.2 of the crystallography and NMR system. Nat Protoc 2:2728-2733.
-
(2007)
Nat Protoc
, vol.2
, pp. 2728-2733
-
-
Brunger, A.T.1
-
43
-
-
0031059039
-
Detecting and overcoming crystal twinning
-
Yeates TO (1997) Detecting and overcoming crystal twinning. Methods Enzymol 276:344-358.
-
(1997)
Methods Enzymol
, vol.276
, pp. 344-358
-
-
Yeates, T.O.1
-
44
-
-
0000984512
-
Structure determination of plastocyanin from a specimen with a hemihedral twinning fraction of one-half
-
Redinbo MR, Yeates TO (1993) Structure determination of plastocyanin from a specimen with a hemihedral twinning fraction of one-half. Acta Crystallogr D Biol Crystallogr 49:375-380.
-
(1993)
Acta Crystallogr D Biol Crystallogr
, vol.49
, pp. 375-380
-
-
Redinbo, M.R.1
Yeates, T.O.2
-
45
-
-
0028304962
-
Satisfying hydrogen bonding potential in proteins
-
McDonald IK, Thornton JM (1994) Satisfying hydrogen bonding potential in proteins. J Mol Biol 238:777-793.
-
(1994)
J Mol Biol
, vol.238
, pp. 777-793
-
-
McDonald, I.K.1
Thornton, J.M.2
|