메뉴 건너뛰기




Volumn 194, Issue 10, 2012, Pages 2594-2605

A global investigation of the Bacillus subtilis iron-sparing response identifies major changes in metabolism

Author keywords

[No Author keywords available]

Indexed keywords

ACONITATE HYDRATASE; CARBON; DICARBOXYLATE TRANSPORTER; FBPAB PROTEIN; FBPC PROTEIN; FERRIC UPTAKE REGULATOR; FSRA PROTEIN; GLTAB PROTEIN; GLUTAMATE SYNTHASE; IRON; IRON SULFUR PROTEIN; NITROGEN; SMALL UNTRANSLATED RNA; SUCCINATE DEHYDROGENASE; TRANSCRIPTOME; TRICARBOXYLIC ACID; UNCLASSIFIED DRUG;

EID: 84861412664     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.05990-11     Document Type: Article
Times cited : (67)

References (50)
  • 1
    • 77954952126 scopus 로고    scopus 로고
    • Messenger RNA turnover processes in Escherichia coli, Bacillus subtilis, and emerging studies in Staphylococcus aureus
    • Anderson KL, Dunman PM. 2009. Messenger RNA turnover processes in Escherichia coli, Bacillus subtilis, and emerging studies in Staphylococcus aureus. Int. J. Microbiol. 2009: 525491.
    • (2009) Int. J. Microbiol. , vol.2009 , pp. 525491
    • Anderson, K.L.1    Dunman, P.M.2
  • 2
    • 0036035079 scopus 로고    scopus 로고
    • Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon
    • Baichoo N, Wang T, Ye R, Helmann JD. 2002. Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon. Mol. Microbiol. 45: 1613-1629.
    • (2002) Mol. Microbiol. , vol.45 , pp. 1613-1629
    • Baichoo, N.1    Wang, T.2    Ye, R.3    Helmann, J.D.4
  • 3
    • 0021972573 scopus 로고
    • Regulation of Bacillus subtilis glutamate synthase genes by the nitrogen source
    • Bohannon DE, Rosenkrantz MS, Sonenshein AL. 1985. Regulation of Bacillus subtilis glutamate synthase genes by the nitrogen source. J. Bacteriol. 163: 957-964.
    • (1985) J. Bacteriol. , vol.163 , pp. 957-964
    • Bohannon, D.E.1    Rosenkrantz, M.S.2    Sonenshein, A.L.3
  • 4
    • 0015212117 scopus 로고
    • The enzymic formation of O-acetylhomoserine in Bacillus subtilis and its regulation by methionine and Sadenosylmethionine
    • Brush A, Paulus H. 1971. The enzymic formation of O-acetylhomoserine in Bacillus subtilis and its regulation by methionine and Sadenosylmethionine. Biochem. Biophys. Res. Commun. 45: 735-741.
    • (1971) Biochem. Biophys. Res. Commun. , vol.45 , pp. 735-741
    • Brush, A.1    Paulus, H.2
  • 5
    • 0029854169 scopus 로고    scopus 로고
    • Mutation of the Bacillus subtilis alkyl hydroperoxide reductase (ahpCF) operon reveals compensatory interactions among hydrogen peroxide stress genes
    • Bsat N, Chen L, Helmann JD. 1996. Mutation of the Bacillus subtilis alkyl hydroperoxide reductase (ahpCF) operon reveals compensatory interactions among hydrogen peroxide stress genes. J. Bacteriol. 178: 6579-6586.
    • (1996) J. Bacteriol. , vol.178 , pp. 6579-6586
    • Bsat, N.1    Chen, L.2    Helmann, J.D.3
  • 6
    • 33645803827 scopus 로고    scopus 로고
    • Identification of Bacillus subtilis Wdependent genes that provide intrinsic resistance to antimicrobial compounds produced by bacilli
    • Butcher BG, Helmann JD. 2006. Identification of Bacillus subtilis Wdependent genes that provide intrinsic resistance to antimicrobial compounds produced by bacilli. Mol. Microbiol. 60: 765-782.
    • (2006) Mol. Microbiol. , vol.60 , pp. 765-782
    • Butcher, B.G.1    Helmann, J.D.2
  • 7
    • 0031280034 scopus 로고    scopus 로고
    • Controlling messenger RNA stability in bacteria: strategies for engineering gene expression
    • Carrier TA, Keasling JD. 1997. Controlling messenger RNA stability in bacteria: strategies for engineering gene expression. Biotechnol. Prog. 13: 699-708.
    • (1997) Biotechnol. Prog. , vol.13 , pp. 699-708
    • Carrier, T.A.1    Keasling, J.D.2
  • 8
    • 0027218065 scopus 로고
    • Metalloregulation in Bacillus subtilis: isolation and characterization of two genes differentially repressed by metal ions
    • Chen L, James LP, Helmann JD. 1993. Metalloregulation in Bacillus subtilis: isolation and characterization of two genes differentially repressed by metal ions. J. Bacteriol. 175: 5428-5437.
    • (1993) J. Bacteriol. , vol.175 , pp. 5428-5437
    • Chen, L.1    James, L.P.2    Helmann, J.D.3
  • 9
    • 47049089928 scopus 로고    scopus 로고
    • Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system
    • Commichau FM, Gunka K, Landmann JJ, Stulke J. 2008. Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system. J. Bacteriol. 190: 3557-3564.
    • (2008) J. Bacteriol. , vol.190 , pp. 3557-3564
    • Commichau, F.M.1    Gunka, K.2    Landmann, J.J.3    Stulke, J.4
  • 13
    • 0036134642 scopus 로고    scopus 로고
    • Metabolic flux responses to pyruvate kinase knockout in Escherichia coli
    • Emmerling M, et al. 2002. Metabolic flux responses to pyruvate kinase knockout in Escherichia coli. J. Bacteriol. 184: 152-164.
    • (2002) J. Bacteriol. , vol.184 , pp. 152-164
    • Emmerling, M.1
  • 14
    • 20044375201 scopus 로고    scopus 로고
    • Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
    • Fischer E, Sauer U. 2005. Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nat. Genet. 37: 636-640.
    • (2005) Nat. Genet. , vol.37 , pp. 636-640
    • Fischer, E.1    Sauer, U.2
  • 15
    • 50149103524 scopus 로고    scopus 로고
    • The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins
    • Gaballa A, et al. 2008. The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins. Proc. Natl. Acad. Sci. U. S. A. 105: 11927-11932.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 11927-11932
    • Gaballa, A.1
  • 16
    • 73849116916 scopus 로고    scopus 로고
    • A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
    • Geissmann T, et al. 2009. A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation. Nucleic Acids Res. 37: 7239-7257.
    • (2009) Nucleic Acids Res , vol.37 , pp. 7239-7257
    • Geissmann, T.1
  • 17
    • 0030597337 scopus 로고    scopus 로고
    • Plasmids for ectopic integration in Bacillus subtilis
    • Guerout-Fleury AM, Frandsen N, Stragier P. 1996. Plasmids for ectopic integration in Bacillus subtilis. Gene 180: 57-61.
    • (1996) Gene , vol.180 , pp. 57-61
    • Guerout-Fleury, A.M.1    Frandsen, N.2    Stragier, P.3
  • 18
    • 0025765503 scopus 로고
    • The Bacillus subtilis hemAXCDBL gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to uroporphyrinogen III
    • Hansson M, Rutberg L, Schroder I, Hederstedt L. 1991. The Bacillus subtilis hemAXCDBL gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to uroporphyrinogen III. J. Bacteriol. 173: 2590-2599.
    • (1991) J. Bacteriol. , vol.173 , pp. 2590-2599
    • Hansson, M.1    Rutberg, L.2    Schroder, I.3    Hederstedt, L.4
  • 20
    • 0024520745 scopus 로고
    • Site-directed mutagenesis by overlap extension using the polymerase chain reaction
    • Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77: 51-59.
    • (1989) Gene , vol.77 , pp. 51-59
    • Ho, S.N.1    Hunt, H.D.2    Horton, R.M.3    Pullen, J.K.4    Pease, L.R.5
  • 21
    • 0017397689 scopus 로고
    • Sodium effect of growth on aspartate and genetic analysis of a Bacillus subtilis mutant with high aspartase activity
    • Iijima T, Diesterhaft MD, Freese E. 1977. Sodium effect of growth on aspartate and genetic analysis of a Bacillus subtilis mutant with high aspartase activity. J. Bacteriol. 129: 1440-1447.
    • (1977) J. Bacteriol. , vol.129 , pp. 1440-1447
    • Iijima, T.1    Diesterhaft, M.D.2    Freese, E.3
  • 22
    • 78651067735 scopus 로고    scopus 로고
    • Hfq binding at RhlBrecognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
    • Ikeda Y, Yagi M, Morita T, Aiba H. 2011. Hfq binding at RhlBrecognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli. Mol. Microbiol. 79: 419-432.
    • (2011) Mol. Microbiol. , vol.79 , pp. 419-432
    • Ikeda, Y.1    Yagi, M.2    Morita, T.3    Aiba, H.4
  • 23
    • 0030812874 scopus 로고    scopus 로고
    • The Klebsiella pneumoniae cytochrome bd= terminal oxidase complex and its role in microaerobic nitrogen fixation
    • Juty NS, Moshiri F, Merrick M, Anthony C, Hill S. 1997. The Klebsiella pneumoniae cytochrome bd= terminal oxidase complex and its role in microaerobic nitrogen fixation. Microbiology 143: 2673-2683.
    • (1997) Microbiology , vol.143 , pp. 2673-2683
    • Juty, N.S.1    Moshiri, F.2    Merrick, M.3    Anthony, C.4    Hill, S.5
  • 24
    • 1942468855 scopus 로고    scopus 로고
    • Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility
    • Kearns DB, Chu F, Rudner R, Losick R. 2004. Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility. Mol. Microbiol. 52: 357-369.
    • (2004) Mol. Microbiol. , vol.52 , pp. 357-369
    • Kearns, D.B.1    Chu, F.2    Rudner, R.3    Losick, R.4
  • 25
    • 0033760480 scopus 로고    scopus 로고
    • Complementary metal ion specificity of the metal-citrate transporters CitM and CitH of Bacillus subtilis
    • Krom BP, Warner JB, Konings WN, Lolkema JS. 2000. Complementary metal ion specificity of the metal-citrate transporters CitM and CitH of Bacillus subtilis. J. Bacteriol. 182: 6374-6381.
    • (2000) J. Bacteriol. , vol.182 , pp. 6374-6381
    • Krom, B.P.1    Warner, J.B.2    Konings, W.N.3    Lolkema, J.S.4
  • 26
    • 75249105828 scopus 로고    scopus 로고
    • A broadening world of bacterial small RNAs
    • Liu JM, Camilli A. 2010. A broadening world of bacterial small RNAs. Curr. Opin. Microbiol. 13: 18-23.
    • (2010) Curr. Opin. Microbiol. , vol.13 , pp. 18-23
    • Liu, J.M.1    Camilli, A.2
  • 27
    • 11144357990 scopus 로고    scopus 로고
    • Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes
    • Mader U, Hennig S, Hecker M, Homuth G. 2004. Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes. J. Bacteriol. 186: 2240-2252.
    • (2004) J. Bacteriol. , vol.186 , pp. 2240-2252
    • Mader, U.1    Hennig, S.2    Hecker, M.3    Homuth, G.4
  • 28
    • 0037007078 scopus 로고    scopus 로고
    • A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
    • Masse E, Gottesman S. 2002. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99: 4620-4625.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 4620-4625
    • Masse, E.1    Gottesman, S.2
  • 29
    • 0028935455 scopus 로고
    • SubtiList: a relational database for the Bacillus subtilis genome
    • Moszer I, Glaser P, Danchin A. 1995. SubtiList: a relational database for the Bacillus subtilis genome. Microbiology 141: 261-268.
    • (1995) Microbiology , vol.141 , pp. 261-268
    • Moszer, I.1    Glaser, P.2    Danchin, A.3
  • 31
    • 57649140337 scopus 로고    scopus 로고
    • The Cth2 ARE-binding protein recruits the Dhh1 helicase to promote the decay of succinate dehydrogenase SDH4 mRNA in response to iron deficiency
    • Pedro-Segura E, et al. 2008. The Cth2 ARE-binding protein recruits the Dhh1 helicase to promote the decay of succinate dehydrogenase SDH4 mRNA in response to iron deficiency. J. Biol. Chem. 283: 28527-28535.
    • (2008) J. Biol. Chem. , vol.283 , pp. 28527-28535
    • Pedro-Segura, E.1
  • 32
    • 79951700321 scopus 로고    scopus 로고
    • Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage
    • Prevost K, Desnoyers G, Jacques JF, Lavoie F, Masse E. 2011. Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage. Genes Dev. 25: 385-396.
    • (2011) Genes Dev , vol.25 , pp. 385-396
    • Prevost, K.1    Desnoyers, G.2    Jacques, J.F.3    Lavoie, F.4    Masse, E.5
  • 33
    • 0034750146 scopus 로고    scopus 로고
    • In vivo effects of sporulation kinases on mutant Spo0A proteins in Bacillus subtilis
    • Quisel JD, Burkholder WF, Grossman AD. 2001. In vivo effects of sporulation kinases on mutant Spo0A proteins in Bacillus subtilis. J. Bacteriol. 183: 6573-6578.
    • (2001) J. Bacteriol. , vol.183 , pp. 6573-6578
    • Quisel, J.D.1    Burkholder, W.F.2    Grossman, A.D.3
  • 34
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R. 2004. Fast and effective prediction of microRNA/target duplexes. RNA 10: 1507-1517.
    • (2004) RNA , vol.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 36
    • 33846061120 scopus 로고    scopus 로고
    • Metabolic networks in motion: 13C-based flux analysis
    • Sauer U. 2006. Metabolic networks in motion: 13C-based flux analysis. Mol. Syst. Biol. 2: 62.
    • (2006) Mol. Syst. Biol. , vol.2 , pp. 62
    • Sauer, U.1
  • 37
    • 12144289449 scopus 로고    scopus 로고
    • Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae
    • Shakoury-Elizeh M, et al. 2004. Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae. Mol. Biol. Cell 15: 1233-1243.
    • (2004) Mol. Biol. Cell , vol.15 , pp. 1233-1243
    • Shakoury-Elizeh, M.1
  • 38
    • 84861368192 scopus 로고    scopus 로고
    • The FsrA sRNA and FbpB protein mediate the iron-dependent induction of the Bacillus subtilis LutABC iron-sulfur-containing oxidases
    • Smaldone GT, Antelmann H, Gaballa A, Helmann JD. 2012. The FsrA sRNA and FbpB protein mediate the iron-dependent induction of the Bacillus subtilis LutABC iron-sulfur-containing oxidases. J. Bacteriol. 194: 2586-2593.
    • (2012) J. Bacteriol. , vol.194 , pp. 2586-2593
    • Smaldone, G.T.1    Antelmann, H.2    Gaballa, A.3    Helmann, J.D.4
  • 39
    • 36248971737 scopus 로고    scopus 로고
    • Control of key metabolic intersections in Bacillus subtilis
    • Sonenshein AL. 2007. Control of key metabolic intersections in Bacillus subtilis. Nat. Rev. Microbiol. 5: 917-927.
    • (2007) Nat. Rev. Microbiol. , vol.5 , pp. 917-927
    • Sonenshein, A.L.1
  • 40
    • 0027524789 scopus 로고
    • Temporal activation of betaglucanase synthesis in Bacillus subtilis is mediated by the GTP pool
    • Stulke J, Hanschke R, Hecker M. 1993. Temporal activation of betaglucanase synthesis in Bacillus subtilis is mediated by the GTP pool. J. Gen. Microbiol. 139: 2041-2045.
    • (1993) J. Gen. Microbiol. , vol.139 , pp. 2041-2045
    • Stulke, J.1    Hanschke, R.2    Hecker, M.3
  • 41
    • 0031737309 scopus 로고    scopus 로고
    • A vector for systematic gene inactivation in Bacillus subtilis
    • Vagner V, Dervyn E, Ehrlich SD. 1998. A vector for systematic gene inactivation in Bacillus subtilis. Microbiology 144: 3097-3104.
    • (1998) Microbiology , vol.144 , pp. 3097-3104
    • Vagner, V.1    Dervyn, E.2    Ehrlich, S.D.3
  • 42
    • 0026680454 scopus 로고
    • Cloning and nucleotide sequence of the leucyl-tRNA synthetase gene of Bacillus subtilis
    • Vander Horn PB, Zahler SA. 1992. Cloning and nucleotide sequence of the leucyl-tRNA synthetase gene of Bacillus subtilis. J. Bacteriol. 174: 3928-3935.
    • (1992) J. Bacteriol. , vol.174 , pp. 3928-3935
    • Vander Horn, P.B.1    Zahler, S.A.2
  • 43
    • 0014705659 scopus 로고
    • Bacterial distribution of the use of succinyl and acetyl blocking groups in diaminopimelic acid biosynthesis
    • Weinberger S, Gilvarg C. 1970. Bacterial distribution of the use of succinyl and acetyl blocking groups in diaminopimelic acid biosynthesis. J. Bacteriol. 101: 323-324.
    • (1970) J. Bacteriol. , vol.101 , pp. 323-324
    • Weinberger, S.1    Gilvarg, C.2
  • 44
    • 0026750167 scopus 로고
    • Cloning, sequencing, and molecular analysis of the dnaK locus from Bacillus subtilis
    • Wetzstein M, et al. 1992. Cloning, sequencing, and molecular analysis of the dnaK locus from Bacillus subtilis. J. Bacteriol. 174: 3300-3310.
    • (1992) J. Bacteriol. , vol.174 , pp. 3300-3310
    • Wetzstein, M.1
  • 46
    • 27644557812 scopus 로고    scopus 로고
    • The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis
    • You C, et al. 2005. The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis. BMC Microbiol. 5: 57.
    • (2005) BMC Microbiol , vol.5 , pp. 57
    • You, C.1
  • 47
    • 79956161164 scopus 로고    scopus 로고
    • Two methionine aminopeptidases from Acinetobacter baumannii are functional enzymes
    • Yuan H, Chai S, Lam C, Howard XH, Ye Q. 2011. Two methionine aminopeptidases from Acinetobacter baumannii are functional enzymes. Bioorg. Med. Chem. Lett. 21: 3395-3398.
    • (2011) Bioorg. Med. Chem. Lett. , vol.21 , pp. 3395-3398
    • Yuan, H.1    Chai, S.2    Lam, C.3    Howard, X.H.4    Ye, Q.5
  • 49
    • 25444489844 scopus 로고    scopus 로고
    • FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments
    • Zamboni N, Fischer E, Sauer U. 2005. FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments. BMC Bioinformatics 6: 209.
    • (2005) BMC Bioinformatics , vol.6 , pp. 209
    • Zamboni, N.1    Fischer, E.2    Sauer, U.3
  • 50
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.