-
1
-
-
77954952126
-
Messenger RNA turnover processes in Escherichia coli, Bacillus subtilis, and emerging studies in Staphylococcus aureus
-
Anderson KL, Dunman PM. 2009. Messenger RNA turnover processes in Escherichia coli, Bacillus subtilis, and emerging studies in Staphylococcus aureus. Int. J. Microbiol. 2009: 525491.
-
(2009)
Int. J. Microbiol.
, vol.2009
, pp. 525491
-
-
Anderson, K.L.1
Dunman, P.M.2
-
2
-
-
0036035079
-
Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon
-
Baichoo N, Wang T, Ye R, Helmann JD. 2002. Global analysis of the Bacillus subtilis Fur regulon and the iron starvation stimulon. Mol. Microbiol. 45: 1613-1629.
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 1613-1629
-
-
Baichoo, N.1
Wang, T.2
Ye, R.3
Helmann, J.D.4
-
3
-
-
0021972573
-
Regulation of Bacillus subtilis glutamate synthase genes by the nitrogen source
-
Bohannon DE, Rosenkrantz MS, Sonenshein AL. 1985. Regulation of Bacillus subtilis glutamate synthase genes by the nitrogen source. J. Bacteriol. 163: 957-964.
-
(1985)
J. Bacteriol.
, vol.163
, pp. 957-964
-
-
Bohannon, D.E.1
Rosenkrantz, M.S.2
Sonenshein, A.L.3
-
4
-
-
0015212117
-
The enzymic formation of O-acetylhomoserine in Bacillus subtilis and its regulation by methionine and Sadenosylmethionine
-
Brush A, Paulus H. 1971. The enzymic formation of O-acetylhomoserine in Bacillus subtilis and its regulation by methionine and Sadenosylmethionine. Biochem. Biophys. Res. Commun. 45: 735-741.
-
(1971)
Biochem. Biophys. Res. Commun.
, vol.45
, pp. 735-741
-
-
Brush, A.1
Paulus, H.2
-
5
-
-
0029854169
-
Mutation of the Bacillus subtilis alkyl hydroperoxide reductase (ahpCF) operon reveals compensatory interactions among hydrogen peroxide stress genes
-
Bsat N, Chen L, Helmann JD. 1996. Mutation of the Bacillus subtilis alkyl hydroperoxide reductase (ahpCF) operon reveals compensatory interactions among hydrogen peroxide stress genes. J. Bacteriol. 178: 6579-6586.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6579-6586
-
-
Bsat, N.1
Chen, L.2
Helmann, J.D.3
-
6
-
-
33645803827
-
Identification of Bacillus subtilis Wdependent genes that provide intrinsic resistance to antimicrobial compounds produced by bacilli
-
Butcher BG, Helmann JD. 2006. Identification of Bacillus subtilis Wdependent genes that provide intrinsic resistance to antimicrobial compounds produced by bacilli. Mol. Microbiol. 60: 765-782.
-
(2006)
Mol. Microbiol.
, vol.60
, pp. 765-782
-
-
Butcher, B.G.1
Helmann, J.D.2
-
7
-
-
0031280034
-
Controlling messenger RNA stability in bacteria: strategies for engineering gene expression
-
Carrier TA, Keasling JD. 1997. Controlling messenger RNA stability in bacteria: strategies for engineering gene expression. Biotechnol. Prog. 13: 699-708.
-
(1997)
Biotechnol. Prog.
, vol.13
, pp. 699-708
-
-
Carrier, T.A.1
Keasling, J.D.2
-
8
-
-
0027218065
-
Metalloregulation in Bacillus subtilis: isolation and characterization of two genes differentially repressed by metal ions
-
Chen L, James LP, Helmann JD. 1993. Metalloregulation in Bacillus subtilis: isolation and characterization of two genes differentially repressed by metal ions. J. Bacteriol. 175: 5428-5437.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 5428-5437
-
-
Chen, L.1
James, L.P.2
Helmann, J.D.3
-
9
-
-
47049089928
-
Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system
-
Commichau FM, Gunka K, Landmann JJ, Stulke J. 2008. Glutamate metabolism in Bacillus subtilis: gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system. J. Bacteriol. 190: 3557-3564.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 3557-3564
-
-
Commichau, F.M.1
Gunka, K.2
Landmann, J.J.3
Stulke, J.4
-
13
-
-
0036134642
-
Metabolic flux responses to pyruvate kinase knockout in Escherichia coli
-
Emmerling M, et al. 2002. Metabolic flux responses to pyruvate kinase knockout in Escherichia coli. J. Bacteriol. 184: 152-164.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 152-164
-
-
Emmerling, M.1
-
14
-
-
20044375201
-
Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
-
Fischer E, Sauer U. 2005. Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nat. Genet. 37: 636-640.
-
(2005)
Nat. Genet.
, vol.37
, pp. 636-640
-
-
Fischer, E.1
Sauer, U.2
-
15
-
-
50149103524
-
The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins
-
Gaballa A, et al. 2008. The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins. Proc. Natl. Acad. Sci. U. S. A. 105: 11927-11932.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 11927-11932
-
-
Gaballa, A.1
-
16
-
-
73849116916
-
A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
-
Geissmann T, et al. 2009. A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation. Nucleic Acids Res. 37: 7239-7257.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 7239-7257
-
-
Geissmann, T.1
-
17
-
-
0030597337
-
Plasmids for ectopic integration in Bacillus subtilis
-
Guerout-Fleury AM, Frandsen N, Stragier P. 1996. Plasmids for ectopic integration in Bacillus subtilis. Gene 180: 57-61.
-
(1996)
Gene
, vol.180
, pp. 57-61
-
-
Guerout-Fleury, A.M.1
Frandsen, N.2
Stragier, P.3
-
18
-
-
0025765503
-
The Bacillus subtilis hemAXCDBL gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to uroporphyrinogen III
-
Hansson M, Rutberg L, Schroder I, Hederstedt L. 1991. The Bacillus subtilis hemAXCDBL gene cluster, which encodes enzymes of the biosynthetic pathway from glutamate to uroporphyrinogen III. J. Bacteriol. 173: 2590-2599.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 2590-2599
-
-
Hansson, M.1
Rutberg, L.2
Schroder, I.3
Hederstedt, L.4
-
20
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho SN, Hunt HD, Horton RM, Pullen JK, Pease LR. 1989. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77: 51-59.
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
21
-
-
0017397689
-
Sodium effect of growth on aspartate and genetic analysis of a Bacillus subtilis mutant with high aspartase activity
-
Iijima T, Diesterhaft MD, Freese E. 1977. Sodium effect of growth on aspartate and genetic analysis of a Bacillus subtilis mutant with high aspartase activity. J. Bacteriol. 129: 1440-1447.
-
(1977)
J. Bacteriol.
, vol.129
, pp. 1440-1447
-
-
Iijima, T.1
Diesterhaft, M.D.2
Freese, E.3
-
22
-
-
78651067735
-
Hfq binding at RhlBrecognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli
-
Ikeda Y, Yagi M, Morita T, Aiba H. 2011. Hfq binding at RhlBrecognition region of RNase E is crucial for the rapid degradation of target mRNAs mediated by sRNAs in Escherichia coli. Mol. Microbiol. 79: 419-432.
-
(2011)
Mol. Microbiol.
, vol.79
, pp. 419-432
-
-
Ikeda, Y.1
Yagi, M.2
Morita, T.3
Aiba, H.4
-
23
-
-
0030812874
-
The Klebsiella pneumoniae cytochrome bd= terminal oxidase complex and its role in microaerobic nitrogen fixation
-
Juty NS, Moshiri F, Merrick M, Anthony C, Hill S. 1997. The Klebsiella pneumoniae cytochrome bd= terminal oxidase complex and its role in microaerobic nitrogen fixation. Microbiology 143: 2673-2683.
-
(1997)
Microbiology
, vol.143
, pp. 2673-2683
-
-
Juty, N.S.1
Moshiri, F.2
Merrick, M.3
Anthony, C.4
Hill, S.5
-
24
-
-
1942468855
-
Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility
-
Kearns DB, Chu F, Rudner R, Losick R. 2004. Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility. Mol. Microbiol. 52: 357-369.
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 357-369
-
-
Kearns, D.B.1
Chu, F.2
Rudner, R.3
Losick, R.4
-
25
-
-
0033760480
-
Complementary metal ion specificity of the metal-citrate transporters CitM and CitH of Bacillus subtilis
-
Krom BP, Warner JB, Konings WN, Lolkema JS. 2000. Complementary metal ion specificity of the metal-citrate transporters CitM and CitH of Bacillus subtilis. J. Bacteriol. 182: 6374-6381.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6374-6381
-
-
Krom, B.P.1
Warner, J.B.2
Konings, W.N.3
Lolkema, J.S.4
-
26
-
-
75249105828
-
A broadening world of bacterial small RNAs
-
Liu JM, Camilli A. 2010. A broadening world of bacterial small RNAs. Curr. Opin. Microbiol. 13: 18-23.
-
(2010)
Curr. Opin. Microbiol.
, vol.13
, pp. 18-23
-
-
Liu, J.M.1
Camilli, A.2
-
27
-
-
11144357990
-
Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes
-
Mader U, Hennig S, Hecker M, Homuth G. 2004. Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes. J. Bacteriol. 186: 2240-2252.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 2240-2252
-
-
Mader, U.1
Hennig, S.2
Hecker, M.3
Homuth, G.4
-
28
-
-
0037007078
-
A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli
-
Masse E, Gottesman S. 2002. A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli. Proc. Natl. Acad. Sci. U. S. A. 99: 4620-4625.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 4620-4625
-
-
Masse, E.1
Gottesman, S.2
-
29
-
-
0028935455
-
SubtiList: a relational database for the Bacillus subtilis genome
-
Moszer I, Glaser P, Danchin A. 1995. SubtiList: a relational database for the Bacillus subtilis genome. Microbiology 141: 261-268.
-
(1995)
Microbiology
, vol.141
, pp. 261-268
-
-
Moszer, I.1
Glaser, P.2
Danchin, A.3
-
30
-
-
33646592214
-
Role of the Fur regulon in iron transport in Bacillus subtilis
-
Ollinger J, Song KB, Antelmann H, Hecker M, Helmann JD. 2006. Role of the Fur regulon in iron transport in Bacillus subtilis. J. Bacteriol. 188: 3664-3673.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3664-3673
-
-
Ollinger, J.1
Song, K.B.2
Antelmann, H.3
Hecker, M.4
Helmann, J.D.5
-
31
-
-
57649140337
-
The Cth2 ARE-binding protein recruits the Dhh1 helicase to promote the decay of succinate dehydrogenase SDH4 mRNA in response to iron deficiency
-
Pedro-Segura E, et al. 2008. The Cth2 ARE-binding protein recruits the Dhh1 helicase to promote the decay of succinate dehydrogenase SDH4 mRNA in response to iron deficiency. J. Biol. Chem. 283: 28527-28535.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 28527-28535
-
-
Pedro-Segura, E.1
-
32
-
-
79951700321
-
Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage
-
Prevost K, Desnoyers G, Jacques JF, Lavoie F, Masse E. 2011. Small RNA-induced mRNA degradation achieved through both translation block and activated cleavage. Genes Dev. 25: 385-396.
-
(2011)
Genes Dev
, vol.25
, pp. 385-396
-
-
Prevost, K.1
Desnoyers, G.2
Jacques, J.F.3
Lavoie, F.4
Masse, E.5
-
33
-
-
0034750146
-
In vivo effects of sporulation kinases on mutant Spo0A proteins in Bacillus subtilis
-
Quisel JD, Burkholder WF, Grossman AD. 2001. In vivo effects of sporulation kinases on mutant Spo0A proteins in Bacillus subtilis. J. Bacteriol. 183: 6573-6578.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6573-6578
-
-
Quisel, J.D.1
Burkholder, W.F.2
Grossman, A.D.3
-
34
-
-
4644237189
-
Fast and effective prediction of microRNA/target duplexes
-
Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R. 2004. Fast and effective prediction of microRNA/target duplexes. RNA 10: 1507-1517.
-
(2004)
RNA
, vol.10
, pp. 1507-1517
-
-
Rehmsmeier, M.1
Steffen, P.2
Hochsmann, M.3
Giegerich, R.4
-
35
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: a laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
36
-
-
33846061120
-
Metabolic networks in motion: 13C-based flux analysis
-
Sauer U. 2006. Metabolic networks in motion: 13C-based flux analysis. Mol. Syst. Biol. 2: 62.
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 62
-
-
Sauer, U.1
-
37
-
-
12144289449
-
Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae
-
Shakoury-Elizeh M, et al. 2004. Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae. Mol. Biol. Cell 15: 1233-1243.
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 1233-1243
-
-
Shakoury-Elizeh, M.1
-
38
-
-
84861368192
-
The FsrA sRNA and FbpB protein mediate the iron-dependent induction of the Bacillus subtilis LutABC iron-sulfur-containing oxidases
-
Smaldone GT, Antelmann H, Gaballa A, Helmann JD. 2012. The FsrA sRNA and FbpB protein mediate the iron-dependent induction of the Bacillus subtilis LutABC iron-sulfur-containing oxidases. J. Bacteriol. 194: 2586-2593.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2586-2593
-
-
Smaldone, G.T.1
Antelmann, H.2
Gaballa, A.3
Helmann, J.D.4
-
39
-
-
36248971737
-
Control of key metabolic intersections in Bacillus subtilis
-
Sonenshein AL. 2007. Control of key metabolic intersections in Bacillus subtilis. Nat. Rev. Microbiol. 5: 917-927.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 917-927
-
-
Sonenshein, A.L.1
-
40
-
-
0027524789
-
Temporal activation of betaglucanase synthesis in Bacillus subtilis is mediated by the GTP pool
-
Stulke J, Hanschke R, Hecker M. 1993. Temporal activation of betaglucanase synthesis in Bacillus subtilis is mediated by the GTP pool. J. Gen. Microbiol. 139: 2041-2045.
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 2041-2045
-
-
Stulke, J.1
Hanschke, R.2
Hecker, M.3
-
41
-
-
0031737309
-
A vector for systematic gene inactivation in Bacillus subtilis
-
Vagner V, Dervyn E, Ehrlich SD. 1998. A vector for systematic gene inactivation in Bacillus subtilis. Microbiology 144: 3097-3104.
-
(1998)
Microbiology
, vol.144
, pp. 3097-3104
-
-
Vagner, V.1
Dervyn, E.2
Ehrlich, S.D.3
-
42
-
-
0026680454
-
Cloning and nucleotide sequence of the leucyl-tRNA synthetase gene of Bacillus subtilis
-
Vander Horn PB, Zahler SA. 1992. Cloning and nucleotide sequence of the leucyl-tRNA synthetase gene of Bacillus subtilis. J. Bacteriol. 174: 3928-3935.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3928-3935
-
-
Vander Horn, P.B.1
Zahler, S.A.2
-
43
-
-
0014705659
-
Bacterial distribution of the use of succinyl and acetyl blocking groups in diaminopimelic acid biosynthesis
-
Weinberger S, Gilvarg C. 1970. Bacterial distribution of the use of succinyl and acetyl blocking groups in diaminopimelic acid biosynthesis. J. Bacteriol. 101: 323-324.
-
(1970)
J. Bacteriol.
, vol.101
, pp. 323-324
-
-
Weinberger, S.1
Gilvarg, C.2
-
44
-
-
0026750167
-
Cloning, sequencing, and molecular analysis of the dnaK locus from Bacillus subtilis
-
Wetzstein M, et al. 1992. Cloning, sequencing, and molecular analysis of the dnaK locus from Bacillus subtilis. J. Bacteriol. 174: 3300-3310.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3300-3310
-
-
Wetzstein, M.1
-
45
-
-
33745468383
-
Structural basis of catalysis by monometalated methionine aminopeptidase
-
Ye QZ, Xie SX, Ma ZQ, Huang M, Hanzlik RP. 2006. Structural basis of catalysis by monometalated methionine aminopeptidase. Proc. Natl. Acad. Sci. U. S. A. 103: 9470-9475.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 9470-9475
-
-
Ye, Q.Z.1
Xie, S.X.2
Ma, Z.Q.3
Huang, M.4
Hanzlik, R.P.5
-
46
-
-
27644557812
-
The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis
-
You C, et al. 2005. The two authentic methionine aminopeptidase genes are differentially expressed in Bacillus subtilis. BMC Microbiol. 5: 57.
-
(2005)
BMC Microbiol
, vol.5
, pp. 57
-
-
You, C.1
-
47
-
-
79956161164
-
Two methionine aminopeptidases from Acinetobacter baumannii are functional enzymes
-
Yuan H, Chai S, Lam C, Howard XH, Ye Q. 2011. Two methionine aminopeptidases from Acinetobacter baumannii are functional enzymes. Bioorg. Med. Chem. Lett. 21: 3395-3398.
-
(2011)
Bioorg. Med. Chem. Lett.
, vol.21
, pp. 3395-3398
-
-
Yuan, H.1
Chai, S.2
Lam, C.3
Howard, X.H.4
Ye, Q.5
-
49
-
-
25444489844
-
FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments
-
Zamboni N, Fischer E, Sauer U. 2005. FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments. BMC Bioinformatics 6: 209.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 209
-
-
Zamboni, N.1
Fischer, E.2
Sauer, U.3
-
50
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|