-
1
-
-
0024531901
-
Facilitated target location in biological systems
-
von Hippel, P.H. and Berg, O.G. (1989) Facilitated target location in biological systems. J. Biol. Chem., 264, 675-678. (Pubitemid 19038039)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.2
, pp. 675-678
-
-
Von Hippel, P.H.1
Berg, O.G.2
-
2
-
-
31944435731
-
Long-distance lateral diffusion of human Rad51 on double-stranded DNA
-
DOI 10.1073/pnas.0508366103
-
Granéli, A., Yeykal, C.C., Robertson, R.B. and Greene, E.C. (2006) Long-distance lateral diffusion of human Rad51 on double-stranded DNA. Proc. Natl Acad. Sci. USA, 103, 1221-1226. (Pubitemid 43191146)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.5
, pp. 1221-1226
-
-
Graneli, A.1
Yeykal, C.C.2
Robertson, R.B.3
Greene, E.C.4
-
3
-
-
27644460480
-
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA
-
DOI 10.1073/pnas.0505378102
-
Gowers, D.M., Wilson, G.G. and Halford, S.E. (2005) Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA. Proc. Natl Acad. Sci. USA, 102, 15883-15888. (Pubitemid 41552837)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.44
, pp. 15883-15888
-
-
Gowers, D.M.1
Wilson, G.G.2
Halford, S.E.3
-
4
-
-
0019887628
-
Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory
-
Berg, O.G., Winter, R.B. and von Hippel, P.H. (1981) Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. Biochemistry, 20, 6929-6948.
-
(1981)
Biochemistry
, vol.20
, pp. 6929-6948
-
-
Berg, O.G.1
Winter, R.B.2
Von Hippel, P.H.3
-
5
-
-
79952259642
-
A single-molecule characterization of p53 search on DNA
-
Tafvizi, A., Huang, F., Fersht, A.R., Mirny, L.A. and van Oijen, A.M. (2011) A single-molecule characterization of p53 search on DNA. Proc. Natl Acad. Sci. USA, 108, 563-568.
-
(2011)
Proc. Natl Acad Sci. USA
, vol.108
, pp. 563-568
-
-
Tafvizi, A.1
Huang, F.2
Fersht, A.R.3
Mirny, L.A.4
Van Oijen, A.M.5
-
6
-
-
49449107340
-
Visualizing one-dimensional diffusion of proteins along DNA
-
Gorman, J. and Greene, E.C. (2008) Visualizing one-dimensional diffusion of proteins along DNA. Nat. Struct. Mol. Biol., 15, 768-774.
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 768-774
-
-
Gorman, J.1
Greene, E.C.2
-
7
-
-
50649121477
-
Advances in single-molecule fluorescence methods for molecular biology
-
Joo, C., Balci, H., Ishitsuka, Y., Buranachai, C. and Ha, T. (2008) Advances in single-molecule fluorescence methods for molecular biology. Annu. Rev. Biochem., 77, 51-76.
-
(2008)
Annu. Rev. Biochem.
, vol.77
, pp. 51-76
-
-
Joo, C.1
Balci, H.2
Ishitsuka, Y.3
Buranachai, C.4
Ha, T.5
-
8
-
-
47249153641
-
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
-
DOI 10.1093/nar/gkn376
-
Bonnet, I., Biebricher, A., Porté, P., Loverdo, C., Bénichou, O., Voituriez, R., Escudé, C., Wende, W., Pingoud, A. and Desbiolles, P. (2008) Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA. Nucleic Acids Res., 36, 4118-4127. (Pubitemid 351984827)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.12
, pp. 4118-4127
-
-
Bonnet, I.1
Biebricher, A.2
Porte, P.3
Loverdo, C.4
Benichou, O.5
Voituriez, R.6
Escude, C.7
Wende, W.8
Pingoud, A.9
Desbiolles, P.10
-
9
-
-
67649394764
-
Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers
-
Biebricher, A., Wende, W., Escudé, C., Pingoud, A. and Desbiolles, P. (2009) Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers. Biophys. J., 96, L50-2.
-
(2009)
Biophys. J.
, vol.96
-
-
Biebricher, A.1
Wende, W.2
Escudé, C.3
Pingoud, A.4
Desbiolles, P.5
-
10
-
-
0020160863
-
Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence
-
Jack, W.E., Terry, B.J. and Modrich, P. (1982) Involvement of outside DNA sequences in the major kinetic path by which EcoRI endonuclease locates and leaves its recognition sequence. Proc. Natl Acad. Sci. USA, 79, 4010-4014.
-
(1982)
Proc. Natl Acad Sci. USA
, vol.79
, pp. 4010-4014
-
-
Jack, W.E.1
Terry, B.J.2
Modrich, P.3
-
11
-
-
0026338873
-
Restriction and modification systems
-
Wilson, G.G. and Murray, N.E. (1991) Restriction and modification systems. Annu. Rev. Genet., 25, 585-627. (Pubitemid 21903734)
-
(1991)
Annual Review of Genetics
, vol.25
, Issue.1
, pp. 585-627
-
-
Wilson, G.G.1
Murray, N.E.2
-
12
-
-
0018309796
-
Promotion and limitation of genetic exchange
-
Arber, W. (1979) Promotion and limitation of genetic exchange. Science, 205, 361-365. (Pubitemid 9243916)
-
(1979)
Science
, vol.205
, Issue.4404
, pp. 361-365
-
-
Arber, W.1
-
13
-
-
0003919158
-
-
Hershey, A.D. (ed.) Cold Spring Harbor Lab. Press, New York
-
Arber, W. (1971) In: Hershey, A.D. (ed.), The Bacteriophage Lambda. Cold Spring Harbor Lab. Press, New York, pp. 83-96.
-
(1971)
The Bacteriophage Lambda
, pp. 83-96
-
-
Arber, W.1
-
14
-
-
0013889292
-
Host specificity of DNA produced by Escherichia coli: Bacterial mutations affecting the restriction and modification of DNA
-
Wood, W.B. (1966) Host specificity of DNA produced by Escherichia coli: bacterial mutations affecting the restriction and modification of DNA. J. Mol. Biol., 16, 118-133.
-
(1966)
J. Mol. Biol.
, vol.16
, pp. 118-133
-
-
Wood, W.B.1
-
15
-
-
17044403057
-
Type II restriction endonucleases: Structure and mechanism
-
Pingoud, A., Fuxreiter, M., Pingoud, V. and Wende, W. (2005) Type II restriction endonucleases: structure and mechanism. Cell. Mol. Life Sci., 62, 685-707.
-
(2005)
Cell. Mol. Life Sci.
, vol.62
, pp. 685-707
-
-
Pingoud, A.1
Fuxreiter, M.2
Pingoud, V.3
Wende, W.4
-
16
-
-
4344649856
-
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I
-
DOI 10.1038/nsmb816
-
Seidel, R., van Noort, J., van der Scheer, C., Bloom, J.G.P., Dekker, N.H., Dutta, C.F., Blundell, A., Robinson, T., Firman, K. and Dekker, C. (2004) Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I. Nat. Struct. Mol. Biol., 11, 838-843. (Pubitemid 39128799)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.9
, pp. 838-843
-
-
Seidel, R.1
Van Noort, J.2
Van Der Scheer, C.3
Bloom, J.G.P.4
Dekker, N.H.5
Dutta, C.F.6
Blundell, A.7
Robinson, T.8
Firman, K.9
Dekker, C.10
-
17
-
-
0022555852
-
Transcription termination and the regulation of gene expression
-
Platt, T. (1986) Transcription termination and the regulation of gene expression. Annu. Rev. Biochem., 55, 339-372. (Pubitemid 16070773)
-
(1986)
Annual Review of Biochemistry
, vol.VOL. 55
, pp. 339-372
-
-
Platt, T.1
-
18
-
-
0016246771
-
RNA polymerase-promoter interactions: Some general principles
-
Travers, A. (1974) RNA polymerase-promoter interactions: some general principles. Cell, 3, 97-104.
-
(1974)
Cell
, vol.3
, pp. 97-104
-
-
Travers, A.1
-
19
-
-
0028782732
-
Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA
-
Jeltsch, A., Alves, J., Wolfes, H., Maass, G. and Pingoud, A. (1994) Pausing of the restriction endonuclease EcoRI during linear diffusion on DNA. Biochemistry, 33, 10215-10219. (Pubitemid 2133358)
-
(1994)
Biochemistry
, vol.33
, Issue.34
, pp. 10215-10219
-
-
Jeltsch, A.1
Alves, J.2
Wolfes, H.3
Maass, G.4
Pingoud, A.5
-
20
-
-
71449094444
-
Nonspecifically bound proteins spin while diffusing along DNA
-
Blainey, P.C., Luo, G., Kou, S.C., Mangel, W.F., Verdine, G.L., Bagchi, B. and Xie, X.S. (2009) Nonspecifically bound proteins spin while diffusing along DNA. Nat. Struct. Mol. Biol., 16, 1224-1229.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1224-1229
-
-
Blainey, P.C.1
Luo, G.2
Kou, S.C.3
Mangel, W.F.4
Verdine, G.L.5
Bagchi, B.6
Xie, X.S.7
-
21
-
-
33748491706
-
Loopless rop: Structure and dynamics of an engineered homotetrameric variant of the repressor of primer protein
-
DOI 10.1021/bi060833n
-
Glykos, N.M., Papanikolau, Y., Vlassi, M., Kotsifaki, D., Cesareni, D. and Kokkinidis, M. (2006) Loopless Rop: structure and dynamics of an engineered homotetrameric variant of the repressor of primer protein. Biochemistry, 45, 10905-10919. (Pubitemid 44360160)
-
(2006)
Biochemistry
, vol.45
, Issue.36
, pp. 10905-10919
-
-
Glykos, N.M.1
Papanikolau, Y.2
Vlassi, M.3
Kotsifaki, D.4
Cesareni, G.5
Kokkinidis, M.6
-
22
-
-
79955832544
-
The diffusion constant of a labeled protein sliding along DNA
-
Bonnet, I. and Desbiolles, P. (2011) The diffusion constant of a labeled protein sliding along DNA. Eur. Phys. J. E Soft Matter, 34, 1-10.
-
(2011)
Eur. Phys. J. e Soft Matter
, vol.34
, pp. 1-10
-
-
Bonnet, I.1
Desbiolles, P.2
-
23
-
-
0028023146
-
Protein engineering of the restriction endonuclease EcoRV: Replacement of an amino acid residue in the DNA binding site leads to an altered selectivity towards unmodified and modified substrates
-
DOI 10.1016/0167-4781(94)90248-8
-
Wenz, C., Selent, U., Wende, W., Jeltsch, A., Wolfes, H. and Pingoud, A. (1994) Protein engineering of the restriction endonuclease EcoRV: replacement of an amino acid residue in the DNA binding site leads to an altered selectivity towards unmodified and modified substrates. Biochim. Biophys. Acta, 1219, 73-80. (Pubitemid 24283795)
-
(1994)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1219
, Issue.1
, pp. 73-80
-
-
Wenz, C.1
Selent, U.2
Wende, W.3
Jeltsch, A.4
Wolfes, H.5
Pingoud, A.6
-
24
-
-
70350044641
-
Small and stable peptidic PEGylated quantum dots to target polyhistidine-tagged proteins with controlled stoichiometry
-
Dif, A., Boulmedais, F., Pinot, M., Roullier, V., Baudy-Floc'h, M., Coquelle, F.M., Clarke, S., Neveu, P., Vignaux, F., Le Borgne, R. et al. (2009) Small and stable peptidic PEGylated quantum dots to target polyhistidine-tagged proteins with controlled stoichiometry. J. Am. Chem. Soc., 131, 14738-14746.
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 14738-14746
-
-
Dif, A.1
Boulmedais, F.2
Pinot, M.3
Roullier, V.4
Baudy-Floc'H, M.5
Coquelle, F.M.6
Clarke, S.7
Neveu, P.8
Vignaux, F.9
Le Borgne, R.10
-
25
-
-
33947311060
-
His-tag impact on structure
-
DOI 10.1107/S0907444906052024, PII S0907444906052024
-
Carson, M., Johnson, D.H., McDonald, H., Brouillette, C. and Delucas, L.J. (2007) His-tag impact on structure. Acta Crystallogr. D Biol. Crystallogr., 63, 295-301. (Pubitemid 46438522)
-
(2007)
Acta Crystallographica Section D: Biological Crystallography
, vol.63
, Issue.3
, pp. 295-301
-
-
Carson, M.1
Johnson, D.H.2
McDonald, H.3
Brouillette, C.4
DeLucas, L.J.5
-
26
-
-
0001913048
-
Predicting protein disorder for N-C-, and internal regions
-
Li, X., Romero, P., Rani, M., Dunker, A. and Obradovic, Z. (1999) Predicting Protein Disorder for N-, C-, and Internal Regions. Genome Inform. Ser. Workshop Genome Inform., 10, 30-40.
-
(1999)
Genome Inform. Ser. Workshop Genome Inform.
, vol.10
, pp. 30-40
-
-
Li, X.1
Romero, P.2
Rani, M.3
Dunker, A.4
Obradovic, Z.5
-
27
-
-
0028073781
-
Comparison of N-terminal affinity fusion domains: Effect on expression level and product heterogeneity of recombinant restriction endonuclease EcoRV
-
DOI 10.1007/s002530050219
-
Oswald, T., Wende, W., Pingoud, A. and Rinas, U. (1994) Comparison of N-terminal affinity fusion domains: effect on expression level and product heterogeneity of recombinant restriction endonuclease EcoRV. Appl. Microbiol. Biotechnol., 42, 73-77. (Pubitemid 24365784)
-
(1994)
Applied Microbiology and Biotechnology
, vol.42
, Issue.1
, pp. 73-77
-
-
Oswald, T.1
Wende, W.2
Pingoud, A.3
Rinas, U.4
-
28
-
-
33645807371
-
A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA
-
Blainey, P.C., van Oijen, A.M., Banerjee, A., Verdine, G.L. and Xie, X.S. (2006) A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. Proc. Natl Acad. Sci. USA, 103, 5752-5757.
-
(2006)
Proc. Natl Acad Sci. USA
, vol.103
, pp. 5752-5757
-
-
Blainey, P.C.1
Van Oijen, A.M.2
Banerjee, A.3
Verdine, G.L.4
Xie, X.S.5
-
29
-
-
44949217503
-
Diffusion constant of a nonspecifically bound protein undergoing curvilinear motion along DNA
-
Bagchi, B., Blainey, P.C. and Xie, X.S. (2008) Diffusion constant of a nonspecifically bound protein undergoing curvilinear motion along DNA. J. Phys. Chem. B, 112, 6282-6284.
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6282-6284
-
-
Bagchi, B.1
Blainey, P.C.2
Xie, X.S.3
-
30
-
-
67650531111
-
Proliferating cell nuclear antigen uses two distinct modes to move along DNA
-
Kochaniak, A.B., Habuchi, S., Loparo, J.J., Chang, D.J., Cimprich, K.A., Walter, J.C. and van Oijen, A.M. (2009) Proliferating cell nuclear antigen uses two distinct modes to move along DNA. J. Biol. Chem., 284, 17700-17710.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 17700-17710
-
-
Kochaniak, A.B.1
Habuchi, S.2
Loparo, J.J.3
Chang, D.J.4
Cimprich, K.A.5
Walter, J.C.6
Van Oijen, A.M.7
-
33
-
-
0000414190
-
Static and dynamical properties of single poly(ethylene glycol) molecules investigated by force spectroscopy
-
Wiley-VCH Verlag, Berlin, Germany
-
Kienberger, F., Pastushenko, V.P., Kada, G., Gruber, H.J., Riener, C., Schindler, H. and Hinterdorfer, P. (2000) Static and dynamical properties of single poly(ethylene glycol) molecules investigated by force spectroscopy. Single Mol., Vol. 1, Wiley-VCH Verlag, Berlin, Germany, pp. 123-128.
-
(2000)
Single Mol.
, vol.1
, pp. 123-128
-
-
Kienberger, F.1
Pastushenko, V.P.2
Kada, G.3
Gruber, H.J.4
Riener, C.5
Schindler, H.6
Hinterdorfer, P.7
-
34
-
-
0036892410
-
Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2
-
DOI 10.1110/ps.0216902
-
Nauli, S., Kuhlman, B., Le Trong, I., Stenkamp, R.E., Teller, D. and Baker, D. (2002) Crystal structures and increased stabilization of the protein G variants with switched folding pathways NuG1 and NuG2. Protein Sci., 11, 2924-2931. (Pubitemid 35365258)
-
(2002)
Protein Science
, vol.11
, Issue.12
, pp. 2924-2931
-
-
Nauli, S.1
Kuhlman, B.2
Trong, I.L.3
Stenkamp, R.E.4
Teller, D.5
Baker, D.6
-
35
-
-
0032983017
-
Quantitative study of polymer conformation and dynamics by single- particle tracking
-
Qian, H. and Elson, E.L. (1999) Quantitative study of polymer conformation and dynamics by single-particle tracking. Biophys. J., 76, 1598-1605. (Pubitemid 29262638)
-
(1999)
Biophysical Journal
, vol.76
, Issue.3
, pp. 1598-1605
-
-
Qian, H.1
Elson, E.L.2
-
36
-
-
27644487200
-
Reactant concentrations from fluorescence correlation spectroscopy with tailored fluorescent probes. An example of local calibration-free pH measurement
-
DOI 10.1021/ja053909w
-
Charier, S., Meglio, A., Alcor, D., Cogné-Laage, E., Allemand, J., Jullien, L. and Lemarchand, A. (2005) Reactant concentrations from fluorescence correlation spectroscopy with tailored fluorescent probes. An example of local calibration-free pH measurement. J. Am. Chem. Soc., 127, 15491-15505. (Pubitemid 41572523)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.44
, pp. 15491-15505
-
-
Charier, S.1
Meglio, A.2
Alcor, D.3
Cogne-Laage, E.4
Allemand, J.-F.5
Jullien, L.6
Lemarchand, A.7
-
37
-
-
0036175642
-
Fluorescence correlation spectroscopy: The technique and its applications
-
Krichevsky, O. and Bonnet, G. (2002) Fluorescence correlation spectroscopy: the technique and its applications. Reports Prog. Phys., 65, 251.
-
(2002)
Reports Prog. Phys.
, vol.65
, pp. 251
-
-
Krichevsky, O.1
Bonnet, G.2
-
38
-
-
0032828419
-
Molecular dynamics in living cells observed by fluorescence correlation spectroscopy with one- and two-photon excitation
-
Schwille, P., Haupts, U., Maiti, S. and Webb, W.W. (1999) Molecular dynamics in living cells observed by fluorescence correlation spectroscopy with one-and two-photon excitation. Biophys. J., 77, 2251-2265. (Pubitemid 29463185)
-
(1999)
Biophysical Journal
, vol.77
, Issue.4
, pp. 2251-2265
-
-
Schwille, P.1
Haupts, U.2
Maiti, S.3
Webb, W.W.4
-
39
-
-
0037060136
-
Diffusion coefficient measurements in microfluidic devices
-
DOI 10.1016/S0039-9140(01)00602-6, PII S0039914001006026
-
Culbertson, C.T., Jacobson, S.C. and Michael Ramsey, J. (2002) Diffusion coefficient measurements in microfluidic devices. Talanta, 56, 365-373. (Pubitemid 34145960)
-
(2002)
Talanta
, vol.56
, Issue.2
, pp. 365-373
-
-
Culbertson, C.T.1
Jacobson, S.C.2
Michael Ramsey, J.3
|