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Volumn 12, Issue 1, 2012, Pages

Cooperative interactions in the West Nile virus mutant swarm

Author keywords

[No Author keywords available]

Indexed keywords

COOPERATIVE BEHAVIOR; FITNESS; GENETIC VARIATION; HOST-PATHOGEN INTERACTION; INDIVIDUAL VARIATION; MOSQUITO; MUTATION; PHENOTYPIC PLASTICITY; PRISTINE ENVIRONMENT; RNA; SWARMING; VIRAL DISEASE; VIRUS;

EID: 84861380346     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-12-58     Document Type: Article
Times cited : (54)

References (39)
  • 1
    • 79952140035 scopus 로고    scopus 로고
    • Insights into arbovirus evolution and adaptation from experimental studies
    • 10.3390/v2122594 21994633
    • Insights into arbovirus evolution and adaptation from experimental studies. Ciota AT, Kramer LD, Viruses 2010 2 2594 2617 10.3390/v2122594 21994633
    • (2010) Viruses , vol.2 , pp. 2594-2617
    • Ciota, A.T.1    Kramer, L.D.2
  • 2
    • 0036229533 scopus 로고    scopus 로고
    • Dengue type 3 virus in plasma is a population of closely related genomes: Quasispecies
    • DOI 10.1128/JVI.76.9.4662-4665.2002
    • Dengue type 3 virus in plasma is a population of closely related genomes: quasispecies. Wang WK, Lin SR, Lee CM, King CC, Chang SC, J Virol 2002 76 4662 4665 10.1128/JVI.76.9.4662-4665.2002 11932434 (Pubitemid 34309604)
    • (2002) Journal of Virology , vol.76 , Issue.9 , pp. 4662-4665
    • Wang, W.-K.1    Lin, S.-R.2    Lee, C.-M.3    King, C.-C.4    Chang, S.-C.5
  • 3
    • 0141923566 scopus 로고    scopus 로고
    • E/NS1 modifications of dengue 2 virus after serial passages in mammalian and/or mosquito cells
    • DOI 10.1159/000073208
    • E/NS1 modifications of dengue 2 virus after serial passages in mammalian and/or mosquito cells. Chen WJ, Wu HR, Chiou SS, Intervirology 2003 46 289 295 10.1159/000073208 14555849 (Pubitemid 37256086)
    • (2003) Intervirology , vol.46 , Issue.5 , pp. 289-295
    • Chen, W.-J.1    Wu, H.-R.2    Chiou, S.-S.3
  • 4
    • 23044469970 scopus 로고    scopus 로고
    • Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection
    • DOI 10.1099/vir.0.81015-0
    • Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection. Jerzak G, Bernard KA, Kramer LD, Ebel GD, J Gen Virol 2005 86 2175 2183 10.1099/vir.0.81015-0 16033965 (Pubitemid 41057522)
    • (2005) Journal of General Virology , vol.86 , Issue.8 , pp. 2175-2183
    • Jerzak, G.1    Bernard, K.A.2    Kramer, L.D.3    Ebel, G.D.4
  • 5
    • 33947590487 scopus 로고    scopus 로고
    • The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice
    • DOI 10.1016/j.virol.2006.10.029, PII S0042682206007835
    • The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice. Jerzak GV, Bernard K, Kramer LD, Shi PY, Ebel GD, Virology 2007 360 469 476 10.1016/j.virol.2006.10.029 17134731 (Pubitemid 46482612)
    • (2007) Virology , vol.360 , Issue.2 , pp. 469-476
    • Jerzak, G.V.S.1    Bernard, K.2    Kramer, L.D.3    Shi, P.-Y.4    Ebel, G.D.5
  • 6
    • 15544373334 scopus 로고
    • Sequence space and quasispecies distribution
    • CRC Press, Florida Domingo E, Holland JJ, Ahlquist P, Boca Raton Volume III
    • Sequence space and quasispecies distribution. Eigen M, Biebricher DK, RNA Genetics CRC Press, Florida, Domingo E, Holland JJ, Ahlquist P, Boca Raton, Volume III 1988 211 245
    • (1988) RNA Genetics , pp. 211-245
    • Eigen, M.1    Biebricher, D.K.2
  • 8
    • 0035913336 scopus 로고    scopus 로고
    • Evolution of digital organisms at high mutation rates leads to survival of the flattest
    • DOI 10.1038/35085569
    • Evolution of digital organisms at high mutation rates leads to survival of the flattest. Wilke CO, Wang JL, Ofria C, Lenski RE, Adami C, Nature 2001 412 331 333 10.1038/35085569 11460163 (Pubitemid 32691846)
    • (2001) Nature , vol.412 , Issue.6844 , pp. 331-333
    • Wilke, C.O.1    Wang, J.L.2    Ofria, C.3    Lenski, R.E.4    Adami, C.5
  • 9
    • 0014961824 scopus 로고
    • Defective viral particles and viral disease processes
    • 10.1038/226325a0 5439728
    • Defective viral particles and viral disease processes. Huang AS, Baltimore D, Nature 1970 226 325 327 10.1038/226325a0 5439728
    • (1970) Nature , vol.226 , pp. 325-327
    • Huang, A.S.1    Baltimore, D.2
  • 10
    • 30844446303 scopus 로고    scopus 로고
    • Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes
    • DOI 10.1126/science.1115030
    • Long-Term transmission of defective RNA viruses in humans and aedes mosquitoes. Aaskov J, Buzacott K, Thu HM, Lowry K, Holmes EC, Science 2006 311 236 238 10.1126/science.1115030 16410525 (Pubitemid 43108190)
    • (2006) Science , vol.311 , Issue.5758 , pp. 236-238
    • Aaskov, J.1    Buzacott, K.2    Thu, H.M.3    Lowry, K.4    Holmes, E.C.5
  • 11
    • 79955778236 scopus 로고    scopus 로고
    • Defective interfering viral particles in acute dengue infections
    • 10.1371/journal.pone.0019447 21559384
    • Defective interfering viral particles in acute dengue infections. Li D, Lott WB, Lowry K, Jones A, Thu HM, Aaskov J, PLoS One 2011 6 19447 10.1371/journal.pone.0019447 21559384
    • (2011) PLoS One , vol.6 , pp. 519447
    • Li, D.1    Lott, W.B.2    Lowry, K.3    Jones, A.4    Thu, H.M.5    Aaskov, J.6
  • 12
    • 80052609090 scopus 로고    scopus 로고
    • West Nile virus genetic diversity is maintained during transmission by culex pipiens quinquefasciatus mosquitoes
    • 10.1371/journal.pone.0024466 21935412
    • West Nile virus genetic diversity is maintained during transmission by culex pipiens quinquefasciatus mosquitoes. Brackney DE, Pesko KN, Brown IK, Deardorff ER, Kawatachi J, Ebel GD, PLoS One 2011 6 24466 10.1371/journal.pone. 0024466 21935412
    • (2011) PLoS One , vol.6 , pp. 524466
    • Brackney, D.E.1    Pesko, K.N.2    Brown, I.K.3    Deardorff, E.R.4    Kawatachi, J.5    Ebel, G.D.6
  • 13
    • 2342451657 scopus 로고    scopus 로고
    • Density-dependent selection in vesicular stomatitis virus
    • DOI 10.1128/JVI.78.11.5799-5804.2004
    • Density-dependent selection in vesicular stomatitis virus. Novella IS, Reissig DD, Wilke CO, J Virol 2004 78 5799 5804 10.1128/JVI.78.11.5799-5804.2004 15140977 (Pubitemid 38661667)
    • (2004) Journal of Virology , vol.78 , Issue.11 , pp. 5799-5804
    • Novella, I.S.1    Reissig, D.D.2    Wilke, C.O.3
  • 14
    • 0032924195 scopus 로고    scopus 로고
    • Genetic and fitness changes accompanying adaptation of an arbovirus to vertebrate and invertebrate cells
    • Genetic and fitness changes accompanying adaptation of an arbovirus to vertebrate and invertebrate cells. Weaver SC, Brault AC, Kang W, Holland JJ, J Virol 1999 73 4316 4326 10196330 (Pubitemid 29189879)
    • (1999) Journal of Virology , vol.73 , Issue.5 , pp. 4316-4326
    • Weaver, S.C.1    Brault, A.C.2    Kang, W.3    Holland, J.J.4
  • 15
    • 0035047929 scopus 로고    scopus 로고
    • Differential evolution of eastern equine encephalitis virus populations in response to host cell type
    • Differential evolution of eastern equine encephalitis virus populations in response to host cell type. Cooper LA, Scott TW, Genetics 2001 157 1403 1412 11290699 (Pubitemid 32298812)
    • (2001) Genetics , vol.157 , Issue.4 , pp. 1403-1412
    • Cooper, L.A.1    Scott, T.W.2
  • 16
    • 27644543076 scopus 로고    scopus 로고
    • Effect of alternating passage on adaptation of Sindbis virus to vertebrate and invertebrate cells
    • DOI 10.1128/JVI.79.22.14253-14260.2005
    • Effect of alternating passage on adaptation of sindbis virus to vertebrate and invertebrate cells. Greene IP, Wang E, Deardorff ER, Milleron R, Domingo E, Weaver SC, J Virol 2005 79 14253 14260 10.1128/JVI.79.22.14253-14260. 2005 16254360 (Pubitemid 41552723)
    • (2005) Journal of Virology , vol.79 , Issue.22 , pp. 14253-14260
    • Greenes, I.P.1    Wang, E.2    Deardorff, E.R.3    Milleron, R.4    Domingo, E.5    Weaver, S.C.6
  • 17
    • 4444342618 scopus 로고    scopus 로고
    • Vesicular stomatitis virus evolution during alternation between persistent infection in insect cells and acute infection in mammalian cells is dominated by the persistence phase
    • DOI 10.1128/JVI.78.22.12236-12242.2004
    • Vesicular stomatitis virus evolution during alternation between persistent infection in insect cells and acute infection in mammalian cells is dominated by the persistence phase. Zarate S, Novella IS, J Virol 2004 78 12236 12242 10.1128/JVI.78.22.12236-12242.2004 15507610 (Pubitemid 39458743)
    • (2004) Journal of Virology , vol.78 , Issue.22 , pp. 12236-12242
    • Zarate, S.1    Novella, I.S.2
  • 18
    • 44649151205 scopus 로고    scopus 로고
    • Evolutionary genomics of host adaptation in vesicular stomatitis virus
    • 10.1093/molbev/msn059 18353798
    • Evolutionary genomics of host adaptation in vesicular stomatitis virus. Remold SK, Rambaut A, Turner PE, Mol Biol Evol 2008 25 1138 1147 10.1093/molbev/msn059 18353798
    • (2008) Mol Biol Evol , vol.25 , pp. 1138-1147
    • Remold, S.K.1    Rambaut, A.2    Turner, P.E.3
  • 20
    • 48849095999 scopus 로고    scopus 로고
    • Characterization of mosquito-adapted West Nile virus
    • 10.1099/vir.0.2008/000893-0 18559933
    • Characterization of mosquito-adapted West Nile virus. Ciota AT, Lovelace AO, Jia Y, Davis LJ, Young DS, Kramer LD, J Gen Virol 2008 89 1633 1642 10.1099/vir.0.2008/000893-0 18559933
    • (2008) J Gen Virol , vol.89 , pp. 1633-1642
    • Ciota, A.T.1    Lovelace, A.O.2    Jia, Y.3    Davis, L.J.4    Young, D.S.5    Kramer, L.D.6
  • 21
    • 70849083131 scopus 로고    scopus 로고
    • Experimental passage of St. Louis encephalitis virus in vivo in mosquitoes and chickens reveals evolutionarily significant virus characteristics
    • 10.1371/journal.pone.0007876 19924238
    • Experimental passage of St. Louis encephalitis virus in vivo in mosquitoes and chickens reveals evolutionarily significant virus characteristics. Ciota AT, Jia Y, Payne AF, Jerzak G, Davis LJ, Young DS, et al. PLoS One 2009 4 7876 10.1371/journal.pone.0007876 19924238
    • (2009) PLoS One , vol.4 , pp. 57876
    • Ciota, A.T.1    Jia, Y.2    Payne, A.F.3    Jerzak, G.4    Davis, L.J.5    Young, D.S.6
  • 23
    • 77957243284 scopus 로고    scopus 로고
    • RDP3: A flexible and fast computer program for analyzing recombination
    • 10.1093/bioinformatics/btq467 20798170
    • RDP3: a flexible and fast computer program for analyzing recombination. Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P, Bioinformatics 2010 26 2462 2463 10.1093/bioinformatics/btq467 20798170
    • (2010) Bioinformatics , vol.26 , pp. 2462-2463
    • Martin, D.P.1    Lemey, P.2    Lott, M.3    Moulton, V.4    Posada, D.5    Lefeuvre, P.6
  • 24
    • 79952853435 scopus 로고    scopus 로고
    • Exploring the fitness landscape of an RNA virus by using a universal barcode microarray
    • 10.1128/JVI.02217-10 21289109
    • Exploring the fitness landscape of an RNA virus by using a universal barcode microarray. Lauring AS, Andino R, J Virol 2011 85 3780 3791 10.1128/JVI.02217-10 21289109
    • (2011) J Virol , vol.85 , pp. 3780-3791
    • Lauring, A.S.1    Andino, R.2
  • 26
    • 5144231912 scopus 로고    scopus 로고
    • Co-infection weakens selection against epistatic mutations in RNA viruses
    • DOI 10.1534/genetics.104.030205
    • Co-infection weakens selection against epistatic mutations in RNA viruses. Froissart R, Wilke CO, Montville R, Remold SK, Chao L, Turner PE, Genetics 2004 168 9 19 10.1534/genetics.104.030205 15454523 (Pubitemid 39346575)
    • (2004) Genetics , vol.168 , Issue.1 , pp. 9-19
    • Froissart, R.1    Wilke, C.O.2    Montville, R.3    Remold, S.K.4    Chao, L.5    Turner, P.E.6
  • 27
    • 72849121447 scopus 로고    scopus 로고
    • A trans-complementing recombination trap demonstrates a low propensity of flaviviruses for intermolecular recombination
    • 10.1128/JVI.01063-09 19864381
    • A trans-complementing recombination trap demonstrates a low propensity of flaviviruses for intermolecular recombination. Taucher C, Berger A, Mandl CW, J Virol 2010 84 599 611 10.1128/JVI.01063-09 19864381
    • (2010) J Virol , vol.84 , pp. 599-611
    • Taucher, C.1    Berger, A.2    Mandl, C.W.3
  • 28
    • 70350344982 scopus 로고    scopus 로고
    • Recombination in West Nile Virus: Minimal contribution to genomic diversity
    • 10.1186/1743-422X-6-165 19821990
    • Recombination in West Nile Virus: minimal contribution to genomic diversity. Pickett B, Lefkowitz E, Virol J 2009 6 165 10.1186/1743-422X-6-165 19821990
    • (2009) Virol J , vol.6 , pp. 165
    • Pickett, B.1    Lefkowitz, E.2
  • 29
    • 34548203505 scopus 로고    scopus 로고
    • Adaptation of two flaviviruses results in differences in genetic heterogeneity and virus adaptability
    • DOI 10.1099/vir.0.83061-0
    • Adaptation of two flaviviruses results in differences in genetic heterogeneity and virus adaptability. Ciota AT, Lovelace AO, Jones SA, Payne A, Kramer LD, J Gen Virol 2007 88 2398 2406 10.1099/vir.0.83061-0 17698648 (Pubitemid 47323884)
    • (2007) Journal of General Virology , vol.88 , Issue.9 , pp. 2398-2406
    • Ciota, A.T.1    Lovelace, A.O.2    Jones, S.A.3    Payne, A.4    Kramer, L.D.5
  • 31
    • 0035844043 scopus 로고    scopus 로고
    • Population biology of multihost pathogens
    • DOI 10.1126/science.1059026
    • Population biology of multihost pathogens. Woolhouse ME, Taylor LH, Haydon DT, Science 2001 292 1109 1112 10.1126/science.1059026 11352066 (Pubitemid 32440923)
    • (2001) Science , vol.292 , Issue.5519 , pp. 1109-1112
    • Woolhouse, M.E.J.1    Taylor, L.H.2    Haydon, D.T.3
  • 32
    • 4444358447 scopus 로고    scopus 로고
    • Molecular basis of fitness loss and fitness recovery in vesicular stomatitis virus
    • DOI 10.1016/j.jmb.2004.08.004, PII S0022283604009702
    • Molecular basis of fitness loss and fitness recovery in vesicular stomatitis virus. Novella IS, Ebendick-Corp, J Mol Biol 2004 342 1423 1430 10.1016/j.jmb.2004.08.004 15364571 (Pubitemid 39208669)
    • (2004) Journal of Molecular Biology , vol.342 , Issue.5 , pp. 1423-1430
    • Novella, I.S.1    Ebendick-Corpus, B.E.2
  • 33
    • 70350328578 scopus 로고    scopus 로고
    • Exclusion of West Nile virus superinfection through RNA replication
    • 10.1128/JVI.01205-09 19726510
    • Exclusion of West Nile virus superinfection through RNA replication. Zou G, Zhang B, Lim PY, Yuan Z, Bernard KA, Shi PY, J Virol 2009 83 11765 11776 10.1128/JVI.01205-09 19726510
    • (2009) J Virol , vol.83 , pp. 11765-11776
    • Zou, G.1    Zhang, B.2    Lim, P.Y.3    Yuan, Z.4    Bernard, K.A.5    Shi, P.Y.6
  • 34
    • 0033119814 scopus 로고    scopus 로고
    • Prisoner's dilemma in an RNA virus
    • DOI 10.1038/18913
    • Prisoner's dilemma in an RNA virus. Turner PE, Chao L, Nature 1999 398 441 443 10.1038/18913 10201376 (Pubitemid 29180378)
    • (1999) Nature , vol.398 , Issue.6726 , pp. 441-443
    • Turner, P.E.1    Chao, L.2
  • 35
    • 33646135541 scopus 로고    scopus 로고
    • Quantitation of flaviviruses by fluorescent focus assay
    • 10.1016/j.jviromet.2006.01.003 16510196
    • Quantitation of flaviviruses by fluorescent focus assay. Payne AF, Binduga-Gajewska I, Kauffman EB, Kramer LD, J Virol Methods 2006 134 183 187 10.1016/j.jviromet.2006.01.003 16510196
    • (2006) J Virol Methods , vol.134 , pp. 183-187
    • Payne, A.F.1    Binduga-Gajewska, I.2    Kauffman, E.B.3    Kramer, L.D.4
  • 36
    • 0026070176 scopus 로고
    • Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses
    • 2033662
    • Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses. Holland JJ, De La Torre JC, Clarke DK, Duarte E, J Virol 1991 65 2960 2967 2033662
    • (1991) J Virol , vol.65 , pp. 2960-2967
    • Holland, J.J.1    De La Torre, J.C.2    Clarke, D.K.3    Duarte, E.4
  • 37
    • 0033824415 scopus 로고    scopus 로고
    • RDP: Detection of recombination amongst aligned sequences
    • 10.1093/bioinformatics/16.6.562 10980155
    • RDP: detection of recombination amongst aligned sequences. Martin D, Rybicki E, Bioinformatics 2000 16 562 563 10.1093/bioinformatics/16.6.562 10980155
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 38
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • DOI 10.1006/viro.1999.0056
    • Possible emergence of new geminiviruses by frequent recombination. Padidam M, Sawyer S, Fauquet CM, Virology 1999 265 218 225 10.1006/viro.1999. 0056 10600594 (Pubitemid 30022217)
    • (1999) Virology , vol.265 , Issue.2 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 39
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • 1556748
    • Analyzing the mosaic structure of genes. Smith JM, J Mol Evol 1992 34 126 129 1556748
    • (1992) J Mol Evol , vol.34 , pp. 126-129
    • Smith, J.M.1


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