A qNMR approach for bitterness phenotyping and QTL identification in an F1 apricot progeny

Journal of Biotechnology

Volumn 159, Issue 4, 2012, Pages 312-319

  Cervellati, Claudia ^a   Paetz, Christian ^b   Dondini, Luca ^a   Tartarini, Stefano ^a   Bassi, Daniele ^c   Schneider, Bernd ^b   Masia, Andrea ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

^b MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

^c UNIVERSITY OF MILAN   (Italy)

Author keywords

Apricot; Bitterness; Cyanogenic glucosides; Functional marker; Genetic map; NMR; Phenotyping; QTL

Indexed keywords

APRICOT; BITTERNESS; CYANOGENIC GLUCOSIDES; FUNCTIONAL MARKER; GENETIC MAP; PHENOTYPING; QTL;

CARBOHYDRATES; NUCLEAR MAGNETIC RESONANCE;

GENES;

ACCURACY; APRICOT; ARTICLE; BITTER TASTE; GENE LOCUS; GENE MAPPING; GENETIC ANALYSIS; GENETIC MARKER; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PHENOTYPE; PRIORITY JOURNAL; PROGENY; QUANTITATIVE ANALYSIS; QUANTITATIVE TRAIT LOCUS;

AMYGDALIN; ANALYSIS OF VARIANCE; CHROMOSOME MAPPING; DNA, PLANT; GENES, PLANT; GENETIC MARKERS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PHENOTYPE; PRUNUS; QUANTITATIVE TRAIT LOCI; SEEDLING; TASTE;

ANIMALIA; PRUNUS ARMENIACA;

EID: 84861231267     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2011.09.004     Document Type: Article

References (45)

1. Bak S., Paquette S.M., Morant M., Rasmussen A.V., Saito S., Bjarnholt N., Zagrobelny M., Jørgensen K., Hamann T., Osmani S. Cyanogenic glycosides: a case study for evolution and application of cytochromes p450. Phytochem. Rev. 2006, 5:309-329.
2. Bassi D., Negri P. Ripening date and fruit traits in apricot progenies. Acta Hort. 1991, 293:133-140.
3. Bimboim H.C., Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl. Acids Res. 1979, 7(6):1513-1523.
4. Bliss F.A., Arulsekar S., Foolad M.R., Becerra A.M., Gillen A., Warburton M.L., Dandekar A.M., Kocsisne G.M., Mydin K.K. An expanded genetic linkage map of Prunus based on an interspecific cross between almond and peach. Genome 2002, 45:520-529.
5. Busk P.K., Møller B.L. Dhurrin synthesis in sorghum is regulated at the transcriptional level and induced by nitrogen fertilization in older plants. Plant Physiol. 2002, 129:1222-1231.
6. Caetano-Anollés G., Gresshof P.M. Staining nucleic acids with silver: an alternative to radioisotopic and fluorescent labelling. Promega Notes Mag. 1994, 45:13-20.
7. Dicenta F., Ortega E., Martinez-Gomez P. Use of recessive homozygous genotypes to assess the genetic control of kernel bitterness in almond. Euphytica 2007, 153:221-225.
8. Dirlewanger E., Cosson P., Howad W., Capdeville G., Bosselut N., Claverie M., Voisin R., Poizat C., Lafargue B., Baron O. Microsatellite genetic linkage maps of myrobalan plum and an almond-peach hybrid-location of root-knot nematode resistance genes. Theor. Appl. Genet. 2004, 109(4):827-838.
9. Dondini L., Lain O., Geuna F., Banfi R., Gaiotti F., Tartarini S., Bassi D., Testolin R. Development of a new SSR based linkage map in apricot and analysis of synteny with existing Prunus maps. Tree Genet. Genomes 2007, 3:239-249.
10. Dondini L., Lain O., Vendramin V., Rizzo M., Vivoli D., Adami M., Guidarelli M., Gaiotti F., Palmisano F., Buzzoni A., Boscia D., Geuna F., Tartarini S., Negri P., Castellano M., Savino V., Bassi D., Testolin R. Identification of QTL for resistance to plum pox virus strains M and D in Lito and Harcot apricot cultivars. Mol. Breeding 2011, 27(3):289-299.
11. Etienne C., Rothan C., Moing A., Plomion C., Bodénès C., Svanella-Dumas L., Cosson P., Pronier V., Monet R., Dirlewanger E. Candidate genes and QTLs for sugar and organic acid content in peach [Prunus persica (L.) Batsch]. Theor. Appl. Genet. 2002, 105:145-159.
12. Femenia A., Rossello C., Mulet A., Canellas J. Chemical composition of bitter and sweet apricot kernels. J. Agric. Food Chem. 1995, 43(2):356-361.
13. Franks T.K., Abbas Y., Wirthensohn M.G., Guerin J.R., Kaiser B.N., Sedgley M., Ford C.M. A seed coat cyanohydrin glucosyltransferase is associated with bitterness in almond (Prunus dulcis) kernels. Funct. Plant Biol. 2008, 35:236-246.
14. Gleadow R.M., Woodrow I.E. Temporal and spatial variation in cyanogenic glycosides in Eucalyptus cladocalyx. Tree Physiol. 2000, 20:591-598.
15. Gomez E., Burgos L., Soriano C., Marin J. Amygdalin content in the seeds of several apricot cultivars. J. Sci. Food Agric. 1998, 77:184-186.
16. Hu Z., Poulton J.E. Molecular analysis of (r)-(+)-mandelonitrile lyase microheterogeneity in black cherry. Plant Physiol. 1999, 11:1535-1546.
17. Joobeur T., Viruel M.A., De Vicente M.C., Jàuregui B., Ballester J., Dettori M.T., Verde I., Truco M.J., Messeguer R., Battle I. Construction of a saturated linkage map for Prunus using an almond×peach F2 progeny. Theor. Appl. Genet. 1998, 97:1034-1041.
18. Kostina K.F. Breeding apricot in the southern zone of the USSR. Sadovodstvo 1977, 7:24-25.
19. Malz F., Jancke H. Validation of quantitative NMR. J. Pharm. Biomed. 2005, 38:813-823.
20. Mercado J.A., El Mansouri I., Jimenez-Bermudez S., Plieco-Alfaro F., Quesada M. A convenient protocol for extraction and purification of DNA from Fragaria. In Vitro Cell. Dev. Biol. Plant 1999, 35:152-153.
21. Micklander E., Brimer L., Engelsen S.B. Non invasive assay for cyanogenic constituents in plants by raman spectroscopy: content and distribution of amygdalin in bitter almond (Prunus amygdalus). Appl. Spectrosc. 2002, 56(9):1139-1146.
22. 1H-NMR analyses: application to plant genetics and functional genomics. Funct. Plant Biol. 2004, 31(9):889-902.
23. Møller B.L., Seigler D.S. Biosynthesis of cyanogenic glucosides and related compounds. Plant amino acids 1999, 563-609. Marcel Dekker, New York.
24. Møller B.L. Functional diversifications of cyanogenic glucosides. Curr. Opin. Plant Biol. 2010, 13:338-347.
25. Negri P., Bassi D., Magnanini E., Rizzo M., Bartolozzi F. Bitterness inheritance in apricot (P. armeniaca L.) seeds. Tree Genet. Genomes 2008, 4:767-776.
26. 1H NMR: development and potential of a method for natural products analysis. J. Nat. Prod. 2005, 68:133-149.
27. Pauli G.F., Jaki B.U., Lankin D.C. A routine experimental protocol for qHNMR illustrated with taxol. J. Nat. Prod. 2007, 70:589-595.
28. 1H NMR metabolite fingerprints of grape berry: comparison of vintage and soil effects in bordeaux grapevine growing areas. Anal. Chim. Acta 2006, 563(1-2):346-352.
29. Pflieger S., Lefebvre V., Causse M. The candidate gene approach in plant genetics: a review. Mol. Breeding 2001, 7:275-291.
30. Poulton J.E., Li C.P. Tissue level compartmentation of (r)-amygdalin and amygdalin hydrolase prevents large-scale cyanogenesis in undamaged Prunus seeds. Plant Physiol. 1994, 104:29-35.
31. Ruiz D., Lambert P., Audergon J.M., Dondini L., Tartarini S., Adami M., Gennari F., Cervellati C., De Franceschi P., Sansavini S., Bureau S., Gouble B., Reich M., Renard C.M.G.C., Bassi D., Testolin R. Identification of QTLs for fruit quality traits in apricot. Acta Hort. 2010, 862:587-592.
32. Sánchez-Pérez R., Howad W., Dicenta F., Arùs P., Martìnez-Gòmez P. Mapping major genes and quantitative trait loci controlling agronomic traits in almond. Plant Breeding 2007, 126:310-318.
33. Sánchez-Pérez R., Jørgensen K., Olsen C.E., Dicenta F., Møller B.L. Bitternes in almond. Plant Physiol. 2008, 146:1040-1052.
34. Sánchez-Pérez R., Howad W., Garcia-Mas J., Arús P., Martínez-Gómez P., Dicenta F. Molecular markers for kernel bitterness in almond. Tree Genet. Genomes 2010, 6(2):237-245.
35. Schieber A., Stintzing F.C., Carle R. By-products of plant food processing as a source of functional compounds-recent developments. Trends Food Sci. Technol. 2001, 12(11):401-413.
36. Selmar D., Lieberei R., Biehl B. Mobilization and utilization of cyanogenic glycosides, the linustatin pathway. Plant Physiol. 1988, 86:711-716.
37. Swain E., Li C.P., Poulton J. Tissue and subcellular localization of enzymes catabolizing (R)-amygdalin in mature Prunus serotina seeds. Plant Physiol. 1992, 100:291-300.
38. Swain E., Poulton J.E. Utilization of amygdalin during seedling development of Prunus serotina. Plant Physiol. 1994, 106:437-445.
39. 13C NMR metabolite profiling: potential for understanding and assessing conifer seed quality. J. Exp. Bot. 2005, 56(418):2253-2265.
40. van Ooijen J.W., Voorrips R.W. Joinmap 3.0. Software for the calculation of genetic linkage maps 2002, Plant Research International, Wageningen.
41. van Ooijen J.W., Boer M.P., Jansen R.C., Maliepaard C. MapQTL 4.0. Software for the calculation of QTL positions on genetic maps 2002, Plant Research International, Wageningen.
42. Vetter J. Plant cyanogenic glycosides. Toxicon 2000, 38:11-36.
43. Xu Z., Escamilla-Treviño L., Zeng L., Lalgondar M., Bevan D., Winkel B., Mohamed A., Cheng C.-L., Shih M.-C., Poulton J.E. Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 1. Plant Mol. Biol. 2004, 55(39):343-367.
44. Zagrobelny M., Bak S., Rasmussen A.V., Jørgensen B., Naumann C.M., Møller B.L. Cyanogenic glucosides and plant-insect interactions. Phytochemistry 2004, 65:293-306.
45. Zhou J., Hartmann S., Shepherd B.K., Poulton J.E. Investigation of the microheterogeneity and aglycone specificity-conferring residues of black cherry prunasin hydrolases. Plant Physiol. 2002, 129:1252-1264.