-
1
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Drosophila Genome Consortium
-
Clark AG, Drosophila Genome Consortium (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
-
2
-
-
70450231658
-
Species trees from highly incongruent gene trees in rice
-
Cranston KA, Hurwitz B, Ware D, Stein L, Wing RA, (2009) Species trees from highly incongruent gene trees in rice. Systematic Biology 58: 489-500.
-
(2009)
Systematic Biology
, vol.58
, pp. 489-500
-
-
Cranston, K.A.1
Hurwitz, B.2
Ware, D.3
Stein, L.4
Wing, R.A.5
-
3
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A, Williams BL, King N, Carroll SB, (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425: 798-804.
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
5
-
-
33847302458
-
Inconsistency of phylogenetic estimates from concatenated data under coalescence
-
Kubatko LS, Degnan JH, (2007) Inconsistency of phylogenetic estimates from concatenated data under coalescence. Systematic Biology 56: 17-24.
-
(2007)
Systematic Biology
, vol.56
, pp. 17-24
-
-
Kubatko, L.S.1
Degnan, J.H.2
-
6
-
-
65649131928
-
Gene tree discordance, phylogenetic inference and the multispecies coalescent
-
Degnan JH, Rosenberg NA, (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in Ecology & Evolution 24: 332-340.
-
(2009)
Trends in Ecology & Evolution
, vol.24
, pp. 332-340
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
7
-
-
58249100073
-
Is a new and general theory of molecular systematics emerging?
-
Edwards SV, (2009) Is a new and general theory of molecular systematics emerging? Evolution 63: 1-19.
-
(2009)
Evolution
, vol.63
, pp. 1-19
-
-
Edwards, S.V.1
-
8
-
-
0031504952
-
Gene trees in species trees
-
Maddison WP, (1997) Gene trees in species trees. Systematic Biology 46: 523-536.
-
(1997)
Systematic Biology
, vol.46
, pp. 523-536
-
-
Maddison, W.P.1
-
9
-
-
68049099068
-
Coalescent methods for estimating phylogenetic trees
-
Liu L, Yu L, Kubatko L, Pearl DK, Edwards SV, (2009) Coalescent methods for estimating phylogenetic trees. Molecular Phylogenetics and Evolution 53: 320-328.
-
(2009)
Molecular Phylogenetics and Evolution
, vol.53
, pp. 320-328
-
-
Liu, L.1
Yu, L.2
Kubatko, L.3
Pearl, D.K.4
Edwards, S.V.5
-
10
-
-
63549118031
-
STEM: species tree estimation using maximum likelihood for gene trees under coalescence
-
Kubatko LS, Carstens BC, Knowles LL, (2009) STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 25: 971-973.
-
(2009)
Bioinformatics
, vol.25
, pp. 971-973
-
-
Kubatko, L.S.1
Carstens, B.C.2
Knowles, L.L.3
-
11
-
-
79954549463
-
SpedeSTEM: a rapid and accurate method for species delimitation
-
Ence DD, Carstens BC, (2011) SpedeSTEM: a rapid and accurate method for species delimitation. Molecular Ecology Resources 11: 473-480.
-
(2011)
Molecular Ecology Resources
, vol.11
, pp. 473-480
-
-
Ence, D.D.1
Carstens, B.C.2
-
12
-
-
77249086587
-
Bayesian inference of species trees from multilocus data
-
Heled J, Drummond AJ, (2010) Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution 27: 570-580.
-
(2010)
Molecular Biology and Evolution
, vol.27
, pp. 570-580
-
-
Heled, J.1
Drummond, A.J.2
-
13
-
-
54949090066
-
BEST: Bayesian estimation of species trees under the coalescent model
-
Liu L, (2008) BEST: Bayesian estimation of species trees under the coalescent model. Bioinformatics 24: 2542-2543.
-
(2008)
Bioinformatics
, vol.24
, pp. 2542-2543
-
-
Liu, L.1
-
14
-
-
70349425459
-
Estimating species phylogenies using coalescence times among sequences
-
Liu L, Yu L, Pearl DK, Edwards SV, (2009) Estimating species phylogenies using coalescence times among sequences. Systematic Biology 58: 468-477.
-
(2009)
Systematic Biology
, vol.58
, pp. 468-477
-
-
Liu, L.1
Yu, L.2
Pearl, D.K.3
Edwards, S.V.4
-
15
-
-
33846839295
-
Concordance trees, concordance factors, and the exploration of reticulate genealogy
-
Baum DA, (2007) Concordance trees, concordance factors, and the exploration of reticulate genealogy. Taxon 56: 417-426.
-
(2007)
Taxon
, vol.56
, pp. 417-426
-
-
Baum, D.A.1
-
16
-
-
33846839390
-
Bayesian estimation of concordance among gene trees
-
Ane C, Larget B, Baum DA, Smith SD, Rokas A, (2007) Bayesian estimation of concordance among gene trees. Molecular Biology and Evolution 24: 412-426.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 412-426
-
-
Ane, C.1
Larget, B.2
Baum, D.A.3
Smith, S.D.4
Rokas, A.5
-
19
-
-
80052739253
-
International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world
-
Savary S, Nelson A, Sparks AH, Willocquet L, Duveiller E, et al. (2011) International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world. Plant Disease 95: 1204-1216.
-
(2011)
Plant Disease
, vol.95
, pp. 1204-1216
-
-
Savary, S.1
Nelson, A.2
Sparks, A.H.3
Willocquet, L.4
Duveiller, E.5
-
20
-
-
24944450335
-
The biology of Phytophthora infestans at its center of origin
-
Grunwald NJ, Flier WG, (2005) The biology of Phytophthora infestans at its center of origin. Annual Review of Phytopathology 43: 171-190.
-
(2005)
Annual Review of Phytopathology
, vol.43
, pp. 171-190
-
-
Grunwald, N.J.1
Flier, W.G.2
-
22
-
-
70349253925
-
Applied biotechnology to combat late blight in potato caused by Phytophthora infestans
-
Haverkort A, Struik P, Visser R, Jacobsen E, (2009) Applied biotechnology to combat late blight in potato caused by Phytophthora infestans. Potato Research 52: 249-264.
-
(2009)
Potato Research
, vol.52
, pp. 249-264
-
-
Haverkort, A.1
Struik, P.2
Visser, R.3
Jacobsen, E.4
-
23
-
-
77956924697
-
Population genetics and population diversity of Phytophthora infestans
-
In: Lamour K, Kamoun S, editors, Hoboken, John Wiley & Sons, Inc
-
Fry WE, Grunwald NJ, Cooke D, McLeod A, Forbes GA, et al. (2009) Population genetics and population diversity of Phytophthora infestans. In: Lamour K, Kamoun S, editors. Oomycete Genetics and Genomics: Diversity, Interactions, and Research Tools Hoboken John Wiley & Sons, Inc.
-
(2009)
Oomycete Genetics and Genomics: Diversity, Interactions, and Research Tools
-
-
Fry, W.E.1
Grunwald, N.J.2
Cooke, D.3
McLeod, A.4
Forbes, G.A.5
-
24
-
-
38849202384
-
A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences
-
Blair JE, Coffey MD, Park S-Y, Geiser DM, Kang S, (2008) A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genetics and Biology 45: 266-277.
-
(2008)
Fungal Genetics and Biology
, vol.45
, pp. 266-277
-
-
Blair, J.E.1
Coffey, M.D.2
Park, S.-Y.3
Geiser, D.M.4
Kang, S.5
-
25
-
-
0033850499
-
A molecular phylogeny of Phytophthora and related Oomycetes
-
Cooke D, Drenth A, Duncan J, Wagels G, Brasier C, (2000) A molecular phylogeny of Phytophthora and related Oomycetes. Fungal Genetics and Biology 30: 17-32.
-
(2000)
Fungal Genetics and Biology
, vol.30
, pp. 17-32
-
-
Cooke, D.1
Drenth, A.2
Duncan, J.3
Wagels, G.4
Brasier, C.5
-
26
-
-
3042636961
-
Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences
-
Kroon LPNM, Bakker FT, van den Bosch GBM, Bonants PJM, Flier WG, (2004) Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genetics and Biology 41: 766-782.
-
(2004)
Fungal Genetics and Biology
, vol.41
, pp. 766-782
-
-
Kroon, L.P.N.M.1
Bakker, F.T.2
van den Bosch, G.B.M.3
Bonants, P.J.M.4
Flier, W.G.5
-
27
-
-
0010994014
-
Phytophthora mirabilis, a new species of Phytophthora
-
Galindo J, Hohl HR, (1985) Phytophthora mirabilis, a new species of Phytophthora. Sydowia 38: 87-96.
-
(1985)
Sydowia
, vol.38
, pp. 87-96
-
-
Galindo, J.1
Hohl, H.R.2
-
28
-
-
0036661042
-
Phytophthora ipomoeae sp. nov., a new homothallic species causing leaf blight on Ipomoea longipedunculata in the Toluca Valley of central Mexico
-
Flier WG, Grunwald NJ, Kroon LPNM, van den Bosch GBM, Garay-Serrano E, et al. (2002) Phytophthora ipomoeae sp. nov., a new homothallic species causing leaf blight on Ipomoea longipedunculata in the Toluca Valley of central Mexico. Mycological Research 106: 848-856.
-
(2002)
Mycological Research
, vol.106
, pp. 848-856
-
-
Flier, W.G.1
Grunwald, N.J.2
Kroon, L.P.N.M.3
van den Bosch, G.B.M.4
Garay-Serrano, E.5
-
29
-
-
77955022185
-
Phytophthora andina sp. nov., a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands
-
Oliva RF, Kroon LPNM, Chacón G, Flier WG, Ristaino JB, et al. (2010) Phytophthora andina sp. nov., a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands. Plant Pathology 59: 613-625.
-
(2010)
Plant Pathology
, vol.59
, pp. 613-625
-
-
Oliva, R.F.1
Kroon, L.P.N.M.2
Chacón, G.3
Flier, W.G.4
Ristaino, J.B.5
-
30
-
-
1942536014
-
Genetic diversity of Phytophthora infestans sensu lato in Ecuador provides new insight into the origin of this important plant pathogen
-
Adler NE, Erselius LJ, Chacon MG, Flier WG, Ordonez ME, et al. (2004) Genetic diversity of Phytophthora infestans sensu lato in Ecuador provides new insight into the origin of this important plant pathogen. Phytopathology 94: 154-162.
-
(2004)
Phytopathology
, vol.94
, pp. 154-162
-
-
Adler, N.E.1
Erselius, L.J.2
Chacon, M.G.3
Flier, W.G.4
Ordonez, M.E.5
-
31
-
-
0343485078
-
A novel population of Phytophthora, similar to P. infestans, attacks wild Solanum species in Ecuador
-
Ordonez ME, Hohl HR, Velasco JA, Ramon MP, Oyarzun PJ, et al. (2000) A novel population of Phytophthora, similar to P. infestans, attacks wild Solanum species in Ecuador. Phytopathology 90: 197-202.
-
(2000)
Phytopathology
, vol.90
, pp. 197-202
-
-
Ordonez, M.E.1
Hohl, H.R.2
Velasco, J.A.3
Ramon, M.P.4
Oyarzun, P.J.5
-
32
-
-
80052841206
-
The plant pathogen Phytophthora andina emerged via hybridization of an unknown Phytophthora species and the Irish potato famine pathogen, P. infestans
-
Goss EM, Cardenas ME, Myers K, Forbes GA, Fry WE, et al. (2011) The plant pathogen Phytophthora andina emerged via hybridization of an unknown Phytophthora species and the Irish potato famine pathogen, P. infestans. PLoS ONE 6: e24543.
-
(2011)
Plos one
, vol.6
-
-
Goss, E.M.1
Cardenas, M.E.2
Myers, K.3
Forbes, G.A.4
Fry, W.E.5
-
33
-
-
54049104885
-
Phylogenetic relationships of Phytophthora andina, a new species from the highlands of Ecuador that is closely related to the Irish potato famine pathogen Phytophthora infestans
-
Gomez-Alpizar L, Hu C-H, Oliva R, Forbes G, Ristaino JB, (2008) Phylogenetic relationships of Phytophthora andina, a new species from the highlands of Ecuador that is closely related to the Irish potato famine pathogen Phytophthora infestans. Mycologia 100: 590-602.
-
(2008)
Mycologia
, vol.100
, pp. 590-602
-
-
Gomez-Alpizar, L.1
Hu, C.-H.2
Oliva, R.3
Forbes, G.4
Ristaino, J.B.5
-
34
-
-
84858341461
-
Defining species boundaries in the genus Phytophthora: the case of Phytophthora andina: A response to 'Phytophthora andina sp. nov., a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands'
-
(Oliva et al., 2010)
-
Cárdenas M, Tabima J, Fry WE, Grünwald NJ, Bernal A, et al. (2012) Defining species boundaries in the genus Phytophthora: the case of Phytophthora andina: A response to 'Phytophthora andina sp. nov., a newly identified heterothallic pathogen of solanaceous hosts in the Andean highlands' (Oliva et al., 2010). Plant Pathology 61: 215-220.
-
(2012)
Plant Pathology
, vol.61
, pp. 215-220
-
-
Cárdenas, M.1
Tabima, J.2
Fry, W.E.3
Grünwald, N.J.4
Bernal, A.5
-
35
-
-
84858342840
-
A rebuttal to the letter to the editor concerning 'Defining species boundaries in the genus Phytophthora: the case of Phytophthora andina'
-
Forbes GA, Ristaino JB, Oliva RF, Flier W, (2012) A rebuttal to the letter to the editor concerning 'Defining species boundaries in the genus Phytophthora: the case of Phytophthora andina'. Plant Pathology 61: 221-223.
-
(2012)
Plant Pathology
, vol.61
, pp. 221-223
-
-
Forbes, G.A.1
Ristaino, J.B.2
Oliva, R.F.3
Flier, W.4
-
36
-
-
70349281388
-
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
-
Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, et al. (2009) Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature 461: 393-398.
-
(2009)
Nature
, vol.461
, pp. 393-398
-
-
Haas, B.J.1
Kamoun, S.2
Zody, M.C.3
Jiang, R.H.Y.4
Handsaker, R.E.5
-
37
-
-
78650149135
-
Genome evolution following host jumps in the Irish potato famine pathogen lineage
-
Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, et al. (2010) Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science 330: 1540-1543.
-
(2010)
Science
, vol.330
, pp. 1540-1543
-
-
Raffaele, S.1
Farrer, R.A.2
Cano, L.M.3
Studholme, D.J.4
MacLean, D.5
-
38
-
-
0030605251
-
Characterization of a Phytophthora infestans gene involved in vesicle transport
-
Chen Y, Roxby R, (1996) Characterization of a Phytophthora infestans gene involved in vesicle transport. Gene 181: 89-94.
-
(1996)
Gene
, vol.181
, pp. 89-94
-
-
Chen, Y.1
Roxby, R.2
-
39
-
-
84856681195
-
Mitochondrial haplotype analysis for differentiation of isolates of Phytophthora cinnamomi
-
Martin FN, Coffey MD, (2012) Mitochondrial haplotype analysis for differentiation of isolates of Phytophthora cinnamomi. Phytopathology 102: 229-239.
-
(2012)
Phytopathology
, vol.102
, pp. 229-239
-
-
Martin, F.N.1
Coffey, M.D.2
-
40
-
-
0023822631
-
Relationships between gene trees and species trees
-
Pamilo P, Nei M, (1988) Relationships between gene trees and species trees. Molecular Biology and Evolution 5: 568-583.
-
(1988)
Molecular Biology and Evolution
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
41
-
-
79951561454
-
The accuracy of species tree estimation under simulation: a comparison of methods
-
Leache AD, Rannala B, (2011) The accuracy of species tree estimation under simulation: a comparison of methods. Systematic Biology 60: 126-137.
-
(2011)
Systematic Biology
, vol.60
, pp. 126-137
-
-
Leache, A.D.1
Rannala, B.2
-
42
-
-
79955439952
-
Reconstructing concordance trees and testing the coalescent model from genome-wide data sets
-
In: Knowles LL, Kubatko L, editors, Hoboken, NJ, Wiley-Blackwell
-
Ane C, (2010) Reconstructing concordance trees and testing the coalescent model from genome-wide data sets. In: Knowles LL, Kubatko L, editors. Estimating Species Trees: Practical and Theoretical Aspects Hoboken, NJ Wiley-Blackwell.
-
(2010)
Estimating Species Trees: Practical and Theoretical Aspects
-
-
Ane, C.1
-
43
-
-
80052751970
-
Species tree inference in a recent radiation of orioles (Genus Icterus): Multiple markers and methods reveal cytonuclear discordance in the northern oriole group
-
Jacobsen F, Omland KE, (2011) Species tree inference in a recent radiation of orioles (Genus Icterus): Multiple markers and methods reveal cytonuclear discordance in the northern oriole group. Molecular Phylogenetics and Evolution 61: 460-469.
-
(2011)
Molecular Phylogenetics and Evolution
, vol.61
, pp. 460-469
-
-
Jacobsen, F.1
Omland, K.E.2
-
44
-
-
78149256307
-
BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
-
Larget BR, Kotha SK, Dewey CN, Ane C, (2010) BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinformatics 26: 2910-2911.
-
(2010)
Bioinformatics
, vol.26
, pp. 2910-2911
-
-
Larget, B.R.1
Kotha, S.K.2
Dewey, C.N.3
Ane, C.4
-
45
-
-
58249136809
-
Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
-
Meng C, Kubatko LS, (2009) Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model. Theoretical Population Biology 75: 35-45.
-
(2009)
Theoretical Population Biology
, vol.75
, pp. 35-45
-
-
Meng, C.1
Kubatko, L.S.2
-
46
-
-
70450277249
-
Identifying hybridization events in the presence of coalescence via model selection
-
Kubatko LS, (2009) Identifying hybridization events in the presence of coalescence via model selection. Systematic Biology 58: 478-488.
-
(2009)
Systematic Biology
, vol.58
, pp. 478-488
-
-
Kubatko, L.S.1
-
47
-
-
79951575208
-
Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting
-
Yu Y, Than C, Degnan JH, Nakhleh L, (2011) Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting. Systematic Biology 60: 138-149.
-
(2011)
Systematic Biology
, vol.60
, pp. 138-149
-
-
Yu, Y.1
Than, C.2
Degnan, J.H.3
Nakhleh, L.4
-
48
-
-
0242540589
-
Interspecific hybridization in plant-associated fungi and oomycetes: a review
-
Schardl CL, Craven KD, (2003) Interspecific hybridization in plant-associated fungi and oomycetes: a review. Molecular Ecology 12: 2861-2873.
-
(2003)
Molecular Ecology
, vol.12
, pp. 2861-2873
-
-
Schardl, C.L.1
Craven, K.D.2
-
49
-
-
0033865021
-
Molecular characterization of natural hybrids of Phytophthora nicotianae and P. cactorum
-
Bonants PJM, Hagenaar-de Weerdt M, Man in 't Veld WA, Baayen RP, (2000) Molecular characterization of natural hybrids of Phytophthora nicotianae and P. cactorum. Phytopathology 90: 867-874.
-
(2000)
Phytopathology
, vol.90
, pp. 867-874
-
-
Bonants, P.J.M.1
Hagenaar-de Weerdt, M.2
Veld, W.A.3
Baayen, R.P.4
-
50
-
-
33845620672
-
Natural hybrids of resident and introduced Phytophthora species proliferating on multiple hosts
-
Man in 't Veld WA, de Cock AWAM, Summerbell RC, (2007) Natural hybrids of resident and introduced Phytophthora species proliferating on multiple hosts. European Journal of Plant Pathology 117: 25-33.
-
(2007)
European Journal of Plant Pathology
, vol.117
, pp. 25-33
-
-
Veld, W.A.1
de Cock, A.W.A.M.2
Summerbell, R.C.3
-
51
-
-
0031679420
-
Natural hybrids of Phytophthora nicotianae and Phytophthora cactorum demonstrated by isozyme analysis and random amplified polymorphic DNA
-
Man in 't Veld WA, Veenbaas-Rijks WJ, Ilieva E, de Cock AWAM, Bonants PJM, et al. (1998) Natural hybrids of Phytophthora nicotianae and Phytophthora cactorum demonstrated by isozyme analysis and random amplified polymorphic DNA. Phytopathology 88: 922-929.
-
(1998)
Phytopathology
, vol.88
, pp. 922-929
-
-
Veld, W.A.1
Veenbaas-Rijks, W.J.2
Ilieva, E.3
de Cock, A.W.A.M.4
Bonants, P.J.M.5
-
52
-
-
67650892264
-
Molecular comparison of natural hybrids of Phytophthora nicotianae and P. cactorum infecting loquat trees in Peru and Taiwan
-
Hurtado-Gonzales OP, Aragon-Caballero LM, Flores-Torres JG, Man in't Veld W, Lamour KH, (2009) Molecular comparison of natural hybrids of Phytophthora nicotianae and P. cactorum infecting loquat trees in Peru and Taiwan. Mycologia 101: 496-502.
-
(2009)
Mycologia
, vol.101
, pp. 496-502
-
-
Hurtado-Gonzales, O.P.1
Aragon-Caballero, L.M.2
Flores-Torres, J.G.3
Veld, W.4
Lamour, K.H.5
-
54
-
-
6344220063
-
Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees
-
Brasier CM, Kirk SA, Delcan J, Cooke DEL, Jung T, et al. (2004) Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees. Mycological Research 108: 1172-1184.
-
(2004)
Mycological Research
, vol.108
, pp. 1172-1184
-
-
Brasier, C.M.1
Kirk, S.A.2
Delcan, J.3
Cooke, D.E.L.4
Jung, T.5
-
55
-
-
33646753785
-
Genetic characterization of the natural hybrid species Phytophthora alni as inferred from nuclear and mitochondrial DNA analyses
-
Ioos R, Andrieux A, Marcais B, Frey P, (2006) Genetic characterization of the natural hybrid species Phytophthora alni as inferred from nuclear and mitochondrial DNA analyses. Fungal Genetics and Biology 43: 511-529.
-
(2006)
Fungal Genetics and Biology
, vol.43
, pp. 511-529
-
-
Ioos, R.1
Andrieux, A.2
Marcais, B.3
Frey, P.4
-
56
-
-
33846025056
-
Characterization of microsatellite markers in the interspecific hybrid Phytophthora alni ssp. alni, and cross-amplification with related taxa
-
Ioos R, Barres B, Andrieux A, Frey P, (2007) Characterization of microsatellite markers in the interspecific hybrid Phytophthora alni ssp. alni, and cross-amplification with related taxa. Molecular Ecology Notes 7: 133-137.
-
(2007)
Molecular Ecology Notes
, vol.7
, pp. 133-137
-
-
Ioos, R.1
Barres, B.2
Andrieux, A.3
Frey, P.4
-
57
-
-
34548509202
-
Distribution and expression of elicitin genes in the interspecific hybrid oomycete Phytophthora alni
-
Ioos R, Panabieres F, Industri B, Andrieux A, Frey P, (2007) Distribution and expression of elicitin genes in the interspecific hybrid oomycete Phytophthora alni. Applied and Environmental Microbiology 73: 5587-5597.
-
(2007)
Applied and Environmental Microbiology
, vol.73
, pp. 5587-5597
-
-
Ioos, R.1
Panabieres, F.2
Industri, B.3
Andrieux, A.4
Frey, P.5
-
58
-
-
0035055132
-
Comparative aggressiveness of standard and variant hybrid alder phytophthoras, Phytophthora cambivora and other Phytophthora species on bark of Alnus, Quercus and other woody hosts
-
Brasier CM, Kirk SA, (2001) Comparative aggressiveness of standard and variant hybrid alder phytophthoras, Phytophthora cambivora and other Phytophthora species on bark of Alnus, Quercus and other woody hosts. Plant Pathology 50: 218-229.
-
(2001)
Plant Pathology
, vol.50
, pp. 218-229
-
-
Brasier, C.M.1
Kirk, S.A.2
-
59
-
-
0034044903
-
The likelihood of homoploid hybrid speciation
-
Buerkle CA, Morris RJ, Asmussen MA, Rieseberg LH, (2000) The likelihood of homoploid hybrid speciation. Heredity 84: 441-451.
-
(2000)
Heredity
, vol.84
, pp. 441-451
-
-
Buerkle, C.A.1
Morris, R.J.2
Asmussen, M.A.3
Rieseberg, L.H.4
-
60
-
-
33947219934
-
Hybrid speciation
-
Mallet J, (2007) Hybrid speciation. Nature 446: 279-283.
-
(2007)
Nature
, vol.446
, pp. 279-283
-
-
Mallet, J.1
-
61
-
-
15944425091
-
The ecological genetics of homoploid hybrid speciation
-
Gross BL, Rieseberg LH, (2005) The ecological genetics of homoploid hybrid speciation. Journal of Heredity 96: 241-252.
-
(2005)
Journal of Heredity
, vol.96
, pp. 241-252
-
-
Gross, B.L.1
Rieseberg, L.H.2
-
62
-
-
34250726125
-
Molecular phylogeny of Nyctaginaceae: taxonomy, biogeography, and characters associated with a radiation of xerophytic genera in North America
-
Douglas NA, Manos PS, (2007) Molecular phylogeny of Nyctaginaceae: taxonomy, biogeography, and characters associated with a radiation of xerophytic genera in North America. American Journal of Botany 94: 856-872.
-
(2007)
American Journal of Botany
, vol.94
, pp. 856-872
-
-
Douglas, N.A.1
Manos, P.S.2
-
64
-
-
70849137075
-
Gene pools in wild Lima bean (Phaseolus lunatus L.) from the Americas: Evidences for an Andean origin and past migrations
-
Serrano-Serrano ML, Hernandez-Torres J, Castillo-Villamizar G, Debouck DG, Chacon Sanchez MI, (2010) Gene pools in wild Lima bean (Phaseolus lunatus L.) from the Americas: Evidences for an Andean origin and past migrations. Molecular Phylogenetics and Evolution 54: 76-87.
-
(2010)
Molecular Phylogenetics and Evolution
, vol.54
, pp. 76-87
-
-
Serrano-Serrano, M.L.1
Hernandez-Torres, J.2
Castillo-Villamizar, G.3
Debouck, D.G.4
Chacon Sanchez, M.I.5
-
65
-
-
57749195961
-
A molecular phylogeny of the Solanaceae
-
Olmstead RG, Bohs L, Migid HA, Santiago-Valentin E, Garcia VF, et al. (2008) A molecular phylogeny of the Solanaceae. Taxon 57: 1159-1181.
-
(2008)
Taxon
, vol.57
, pp. 1159-1181
-
-
Olmstead, R.G.1
Bohs, L.2
Migid, H.A.3
Santiago-Valentin, E.4
Garcia, V.F.5
-
66
-
-
2942596065
-
Solanaceae - a model for linking genomics with biodiversity
-
Knapp S, Bohs L, Nee M, Spooner DM, (2004) Solanaceae - a model for linking genomics with biodiversity. Comparative and Functional Genomics 5: 285-291.
-
(2004)
Comparative and Functional Genomics
, vol.5
, pp. 285-291
-
-
Knapp, S.1
Bohs, L.2
Nee, M.3
Spooner, D.M.4
-
67
-
-
26844560706
-
A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping
-
Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ, (2005) A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping. Proceedings of the National Academy of Sciences USA 102: 14694-14699.
-
(2005)
Proceedings of the National Academy of Sciences USA
, vol.102
, pp. 14694-14699
-
-
Spooner, D.M.1
McLean, K.2
Ramsay, G.3
Waugh, R.4
Bryan, G.J.5
-
68
-
-
85057701466
-
History, origin, and early cultivation of tomato (Solanaceae)
-
In: Razdan MK, Mattoo AK, editors, Enfield, Science Publishers, Tomato
-
Peralta IE, Spooner DM, (2007) History, origin, and early cultivation of tomato (Solanaceae). In: Razdan MK, Mattoo AK, editors. Genetic Improvement of Solanaceous Crops, Vol 2: Tomato Enfield Science Publishers.
-
(2007)
Genetic Improvement of Solanaceous Crops
, vol.2
-
-
Peralta, I.E.1
Spooner, D.M.2
-
69
-
-
0030982323
-
Another look at the origin of late blight of potatoes, tomatoes, and pear melon in the Andes of South America
-
Abad ZG, Abad JA, (1997) Another look at the origin of late blight of potatoes, tomatoes, and pear melon in the Andes of South America. Plant Disease 81: 682-688.
-
(1997)
Plant Disease
, vol.81
, pp. 682-688
-
-
Abad, Z.G.1
Abad, J.A.2
-
71
-
-
0002512647
-
Phytophthora infestans: the Mexican connection
-
In: Lucas JA, Shattock RC, Shaw DS, Cooke LR, editors, Cambridge, Cambridge University Press
-
Niederhauser JS, (1991) Phytophthora infestans: the Mexican connection. In: Lucas JA, Shattock RC, Shaw DS, Cooke LR, editors. Phytophthora Cambridge Cambridge University Press.
-
(1991)
Phytophthora
-
-
Niederhauser, J.S.1
-
72
-
-
84987692212
-
Diversification of the Amazonian flora and its relation to key geological and environmental events: a molecular perspective
-
In: Hoorn C, Wesselingh F, editors
-
Pennington R, Dick C, (2010) Diversification of the Amazonian flora and its relation to key geological and environmental events: a molecular perspective. In: Hoorn C, Wesselingh F, editors. Amazonia, Landscape and Species Evolution: A Look into the Past: Wiley-Blackwell Publishing.
-
(2010)
Amazonia, Landscape and Species Evolution: A Look into the Past: Wiley-Blackwell Publishing
-
-
Pennington, R.1
Dick, C.2
-
73
-
-
0035929227
-
Rapid diversification of a species-rich genus of Neotropical rain forest trees
-
Richardson JE, Pennington RT, Pennington TD, Hollingsworth PM, (2001) Rapid diversification of a species-rich genus of Neotropical rain forest trees. Science 293: 2242-2245.
-
(2001)
Science
, vol.293
, pp. 2242-2245
-
-
Richardson, J.E.1
Pennington, R.T.2
Pennington, T.D.3
Hollingsworth, P.M.4
-
74
-
-
44049088333
-
Ancient associations of aquatic beetles and tank bromeliads in the Neotropical forest canopy
-
Balke M, Gomez-Zurita J, Ribera I, Viloria A, Zillikens A, et al. (2008) Ancient associations of aquatic beetles and tank bromeliads in the Neotropical forest canopy. Proceedings of the National Academy of Sciences USA 105: 6356-6361.
-
(2008)
Proceedings of the National Academy of Sciences USA
, vol.105
, pp. 6356-6361
-
-
Balke, M.1
Gomez-Zurita, J.2
Ribera, I.3
Viloria, A.4
Zillikens, A.5
-
75
-
-
80054820590
-
Andean uplift promotes lowland speciation through vicariance and dispersal in Dendrocincla woodcreepers
-
Weir JT, Price M, (2011) Andean uplift promotes lowland speciation through vicariance and dispersal in Dendrocincla woodcreepers. Molecular Ecology 20: 4550-4563.
-
(2011)
Molecular Ecology
, vol.20
, pp. 4550-4563
-
-
Weir, J.T.1
Price, M.2
-
76
-
-
80052346608
-
The fossil record of the Peronosporomycetes (Oomycota)
-
Krings M, Taylor TN, Dotzler N, (2011) The fossil record of the Peronosporomycetes (Oomycota). Mycologia 103: 445-457.
-
(2011)
Mycologia
, vol.103
, pp. 445-457
-
-
Krings, M.1
Taylor, T.N.2
Dotzler, N.3
-
77
-
-
0031574072
-
The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25: 4876-4882.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
78
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
79
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25: 3389-3402.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
80
-
-
85007110786
-
Arlequin ver. 3.0: An integrated software package for population genetics data analysis
-
Excoffier L, Laval G, Schneider S, (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
-
(2005)
Evolutionary Bioinformatics Online
, vol.1
, pp. 47-50
-
-
Excoffier, L.1
Laval, G.2
Schneider, S.3
-
82
-
-
0025269067
-
Inference of haplotypes from PCR-amplified samples of diploid populations
-
Clark AG, (1990) Inference of haplotypes from PCR-amplified samples of diploid populations. Molecular Biology and Evolution 7: 111-122.
-
(1990)
Molecular Biology and Evolution
, vol.7
, pp. 111-122
-
-
Clark, A.G.1
-
83
-
-
33846584121
-
HaploRec: efficient and accurate large-scale reconstruction of haplotypes
-
Eronen L, Geerts F, Toivonen H, (2006) HaploRec: efficient and accurate large-scale reconstruction of haplotypes. BMC Bioinformatics 7: 542.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 542
-
-
Eronen, L.1
Geerts, F.2
Toivonen, H.3
-
85
-
-
78650469373
-
CVhaplot: a consensus tool for statistical haplotyping
-
Huang Z-S, Zhang D-X, (2010) CVhaplot: a consensus tool for statistical haplotyping. Molecular Ecology Resources 10: 1066-1070.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 1066-1070
-
-
Huang, Z.-S.1
Zhang, D.-X.2
-
86
-
-
42049118295
-
Haplotype reconstruction for scnp DNA: a consensus vote approach with extensive sequence data from populations of the migratory locust (Locusta migratoria)
-
Huang Z-S, Ji Y-J, Zhang D-X, (2008) Haplotype reconstruction for scnp DNA: a consensus vote approach with extensive sequence data from populations of the migratory locust (Locusta migratoria). Molecular Ecology 17: 1930-1947.
-
(2008)
Molecular Ecology
, vol.17
, pp. 1930-1947
-
-
Huang, Z.-S.1
Ji, Y.-J.2
Zhang, D.-X.3
-
87
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R, (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sanchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
88
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D, Crandall KA, (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
91
-
-
0003437302
-
-
Available:. Accessed 2012
-
Felsenstein J, (2005) PHYLIP version 3.6. Available: http://evolution.gs.washington.edu/phylip.html. Accessed 2012.
-
(2005)
PHYLIP version 3.6
-
-
Felsenstein, J.1
-
92
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
94
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
-
(2007)
BMC Evolutionary Biology
, vol.7
, pp. 214
-
-
Drummond, A.1
Rambaut, A.2
-
96
-
-
0029141337
-
Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences
-
Moncalvo J-M, Wang H-H, Hseu R-S, (1995) Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences. Mycologia 87: 223-238.
-
(1995)
Mycologia
, vol.87
, pp. 223-238
-
-
Moncalvo, J.-M.1
Wang, H.-H.2
Hseu, R.-S.3
-
97
-
-
0036769336
-
Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences
-
Riethmuller A, Voglmayr H, Goker M, Weiss M, Oberwinkler F, (2002) Phylogenetic relationships of the downy mildews (Peronosporales) and related groups based on nuclear large subunit ribosomal DNA sequences. Mycologia 94: 834-849.
-
(2002)
Mycologia
, vol.94
, pp. 834-849
-
-
Riethmuller, A.1
Voglmayr, H.2
Goker, M.3
Weiss, M.4
Oberwinkler, F.5
-
98
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
In: Innis M, Gelfand D, Sninsky J, White T, editors, New York, Academic Press
-
White T, Bruns T, Lee S, Taylor J, (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M, Gelfand D, Sninsky J, White T, editors. PCR Protocols: A Guide to Methods and Applications New York Academic Press.
-
(1990)
PCR Protocols: A Guide to Methods and Applications
-
-
White, T.1
Bruns, T.2
Lee, S.3
Taylor, J.4
-
99
-
-
0010837105
-
Phylogenetic relationships among some Pythium species inferred from sequence analysis of the mitochondrially encoded cytochrome oxidase II gene
-
Martin FN, (2000) Phylogenetic relationships among some Pythium species inferred from sequence analysis of the mitochondrially encoded cytochrome oxidase II gene. Mycologia 92: 711-727.
-
(2000)
Mycologia
, vol.92
, pp. 711-727
-
-
Martin, F.N.1
-
100
-
-
47249144256
-
Mitochondrial haplotype determination in the oomycete plant pathogen Phytophthora ramorum
-
Martin FN, (2008) Mitochondrial haplotype determination in the oomycete plant pathogen Phytophthora ramorum. Current Genetics 54: 23-34.
-
(2008)
Current Genetics
, vol.54
, pp. 23-34
-
-
Martin, F.N.1
-
101
-
-
2542482828
-
Molecular detection of Phytophthora ramorum, the causal agent of sudden oak death in California, and two additional species commonly recovered from diseased plant material
-
Martin FN, Tooley PW, Blomquist C, (2004) Molecular detection of Phytophthora ramorum, the causal agent of sudden oak death in California, and two additional species commonly recovered from diseased plant material. Phytopathology 94: 621-631.
-
(2004)
Phytopathology
, vol.94
, pp. 621-631
-
-
Martin, F.N.1
Tooley, P.W.2
Blomquist, C.3
|