A systematic approach to the interrogation and sharing of standardised biofilm signatures

Advances in Intelligent and Soft Computing

Volumn 154 AISC, Issue , 2012, Pages 113-120

  Lourenço, Anália ^a   Ferreira, Andreia ^a   Pereira, Maria Olivia ^a   Azevedo, Nuno F ^b  

^a UNIVERSITY OF MINHO   (Portugal)

^b UNIVERSITY OF PORTO   (Portugal)

Author keywords

biofilms; data standardisation; infection causing microorganisms; legacy data

Indexed keywords

ECOTECHNOLOGY; LEGACY DATA; METHODS OF ANALYSIS; NEW STUDY; PUBLIC REPOSITORIES; SCIENTIFIC PUBLICATIONS; STATE-OF-THE-ART DEVICES;

BIOFILMS; STANDARDIZATION;

BIOINFORMATICS;

EID: 84861211113     PISSN: 18675662     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-642-28839-5_13     Document Type: Conference Paper

References (25)

1. McBain, A.J.: Chapter 4: In vitro biofilm models: an overview. Adv. Appl. Microbiol.69, 99-132 (2009)
2. Jain, A., Gupta, Y., Agrawal, R., Khare, P., Jain, S.K.: Biofilms-a microbial life perspective: a critical review. Crit. Rev. Ther. Drug Carrier Syst. 24(5), 393-443 (2007)
3. Van Houdt, R., Michiels, C.W.: Biofilm formation and the food industry, a focus on the bacterial outer surface. J. Appl. Microbiol. 109(4), 1117-1131 (2010)
4. Machado, I., Lopes, S.P., Sousa, A.M., Pereira, M.O.: Adaptive response of single and binary Pseudomonas aeruginosa and Escherichia coli biofilms to benzalkonium chloride. Journal of Basic Microbiology 51, 1-10 (2011)
5. Frei, E., Hodgkiss-Harlow, K., Rossi, P.J., Edmiston Jr., C.E., Bandyk, D.F.: Microbial Pathogenesis of Bacterial Biofilms: A Causative Factor of Vascular Surgical Site Infection. Vasc. Endovascular Surg (2011)
6. Rodrigues, L.R.: Inhibition of bacterial adhesion on medical devices. Adv. Exp. Med. Biol. 715, 351-367 (2011)
7. Høiby, N., Bjarnsholt, T., Givskov, M., Molin, S., Ciofu, O.: Antibiotic resistance of bacterial biofilms. Int. J. Antimicrob. Agents 35(4), 322-332 (2010)
8. Bowler, P.G., Duerden, B.I., Armstrong, D.G.: Wound microbiology and associated approaches to wound management. Clin. Microbiol. Rev. 14(2), 244-269 (2001)
9. Simões, M.: Antimicrobial strategies effective against infectious bacterial biofilms. Curr. Med. Chem. 18(14), 2129-2145 (2011)
10. Smith, A., Buchinsky, F.J., Post, J.C.: Eradicating chronic ear, nose, and throat infections: a systematically conducted literature review of advances in biofilm treatment. Otolaryngol. Head Neck Surg. 144(3), 338-347 (2011)
11. Gião, M.S., Azevedo, N.F., Wilks, S.A., Vieira, M.J., Keevil, C.W.: Persistence of Helicobacter pylori in Heterotrophic Drinking-Water Biofilms. Applied and Environmental Microbiology 74(19), 5898-5904 (2008)
12. Jang, H.J., Choi, Y.J., Ka, J.O.: Effects of diverse water pipe materials on bacterial communities and water quality in the annular reactor. J. Microbiol. Biotechnol. 21(2), 115-123 (2011)
13. Ramage, G., Culshaw, S., Jones, B., Williams, C.: Are we any closer to beating the biofilm: novel methods of biofilm control. Curr. Opin. Infect. Dis. 23(6), 560-566(2010)
14. Cos, P., Toté, K., Horemans, T., Maes, L.: Biofilms: an extra hurdle for effective antimicrobial therapy. Curr. Pharm. Des. 16(20), 2279-2295 (2010)
15. Wood, T.K.: Insights on Escherichia coli biofilm formation and inhibition from wholetranscriptome profiling. Environ. Microbiol. 11(1), 1-15 (2009)
16. Coenye, T.: Response of sessile cells to stress: from changes in gene expression to phenotypic adaptation. FEMS Immunol. Med. Microbiol. 59(3), 239-252 (2010)
17. Silva, M.S., De Souza, A.A., Takita, M.A., Labate, C.A., Machado, M.A.: Analysis of the biofilm proteome of Xylella fastidiosa. Proteome Sci. 9, 58 (2011)
18. Jiao, Y., D'haeseleer, P., Dill, B.D., Shah, M., Verberkmoes, N.C., Hettich, R.L., Banfield, J.F., Thelen, M.P.: Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community. Appl. Environ. Microbiol. 77(15), 5230-5237 (2011)
19. Cabral, M.P., Soares, N.C., Aranda, J., Parreira, J.R., Rumbo, C., Poza, M., Valle, J., Calamia, V., Lasa, I., Bou, G.: Proteomic and functional analyses reveal a unique lifestyle for Acinetobacter baumannii biofilms and a key role for histidine metabolism. J. Proteome Res. 10(8), 3399-3417 (2011)
20. Xu, H., Lee, H.Y., Ahn, J.: Growth and virulence properties of biofilm-forming Salmonella enterica serovar typhimurium under different acidic conditions. Appl. Environ. Microbiol. 76(24), 7910-7917 (2010)
21. Workentine, M.L., Harrison, J.J., Weljie, A.M., Tran, V.A., Stenroos, P.U., Tremaroli, V., Vogel, H.J., Ceri, H., Turner, R.J.: Phenotypic and metabolic profiling of colony morphology variants evolved from Pseudomonas fluorescens biofilms. Environ. Microbiol. 12(6), 1565-1577 (2010)
22. Azevedo, N.F., Lopes, S.P., Keevil, C.W., Pereira, M.O., Vieira, M.J.: Time to "go large" on biofilm research: advantages of an omics approach. Biotechnol. Lett. 31(4), 477-485 (2009)
23. Sayers, E.W., Barrett, T., Benson, D.A., Bolton, E., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Federhen, S., Feolo, M., Fingerman, I.M., Geer, L.Y., Helmberg, W., Kapustin, Y., Landsman, D., Lipman, D.J., Lu, Z., Madden, T.L., Madej, T., Maglott, D.R., Marchler-Bauer, A., Miller, V., Mizrachi, I., Ostell, J., Panchenko, A., Phan, L., Pruitt, K.D., Schuler, G.D., Sequeira, E., Sherry, S.T., Shumway, M., Sirotkin, K., Slotta, D., Souvorov, A., Starchenko, G., Tatusova, T.A., Wagner, L., Wang, Y., Wilbur, W.J., Yaschenko, E., Ye, J.: Database resources of the Na-tional Center for Biotechnology Information. Nucleic Acids Res. 39, D38-D51 (2011)
24. Thomas, S., Karnik, S., Barai, R.S., Jayaraman, V.K., Idicula-Thomas, S.: CAMP: a useful resource for research on antimicrobial peptides. Nucleic Acids Res. 780, D774-D780 (2010)
25. Azevedo, N.F., Pacheco, A.P., Keevil, C.W., Vieira, M.J.: Adhesion of water stressed Helicobacter pylori to abiotic surfaces. J. Appl. Microbiol. 111, 718-724 (2006)