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Volumn 10, Issue 2, 2012, Pages 181-197

Common atlas format and 3D brain atlas reconstructor: Infrastructure for Constructing 3D brain atlases

Author keywords

3D reconstruction; 3D visualization; Brain atlas; Reproducible research; Tool interoperability; Visualization

Indexed keywords

ANIMAL; BOOK; BRAIN; C57BL MOUSE; COMPUTER PROGRAM; FACTUAL DATABASE; HISTOLOGY; HUMAN; IMAGE PROCESSING; MEDICAL INFORMATICS; METHODOLOGY; MOUSE; RAT; REPRODUCIBILITY; REVIEW; THREE DIMENSIONAL IMAGING;

EID: 84861202352     PISSN: 15392791     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12021-011-9138-6     Document Type: Review
Times cited : (41)

References (36)
  • 1
    • 78650181934 scopus 로고    scopus 로고
    • A reproducible evaluation of ants similarity metric performance in brain image registration
    • Avants, B. B., Tustison, N. J., Song, G., Cook, P. A., Klein, A., & Gee, J. C. (2011a). A reproducible evaluation of ants similarity metric performance in brain image registration. Neuroimage, 54(3), 2033-2044.
    • (2011) Neuroimage , vol.54 , Issue.3 , pp. 2033-2044
    • Avants, B.B.1    Tustison, N.J.2    Song, G.3    Cook, P.A.4    Klein, A.5    Gee, J.C.6
  • 2
    • 84855903911 scopus 로고    scopus 로고
    • An open source multivariate framework for n-tissue segmentation with evaluation on public data
    • doi:10.1007/s12021-011-9109-y
    • Avants, B. B., Tustison, N. J., Wu, J., Cook, P. A., & Gee, J. C. (2011b). An open source multivariate framework for n-tissue segmentation with evaluation on public data. Neuroinformatics, 9(4), 381-400. doi:10.1007/s12021- 011-9109-y.
    • (2011) Neuroinformatics , vol.9 , Issue.4 , pp. 381-400
    • Avants, B.B.1    Tustison, N.J.2    Wu, J.3    Cook, P.A.4    Gee, J.C.5
  • 6
    • 64049115518 scopus 로고    scopus 로고
    • Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis
    • doi:10.1007/s12021-008-9039-5
    • Bezgin, G., Reid, A., Schubert, D., & Kötter, R. (2009).Matching spatial with ontological brain regions using Java tools for visualization, database access, and integrated data analysis. Neuroinformatics, 7, 7-22. doi:10.1007/s12021-008-9039-5.
    • (2009) Neuroinformatics , vol.7 , pp. 7-22
    • Bezgin, G.1    Reid, A.2    Schubert, D.3    Kötter, R.4
  • 7
    • 0036551331 scopus 로고    scopus 로고
    • Localization in the brain: New solutions emerging
    • DOI 10.1038/nrn790
    • Bjaalie, J. G. (2002). Opinion: Localization in the brain: New solutions emerging. Nature Reviews, Neuroscience, 3(4), 322-325. (Pubitemid 135706613)
    • (2002) Nature Reviews Neuroscience , vol.3 , Issue.4 , pp. 322-325
    • Bjaalie, J.G.1
  • 8
    • 24944447969 scopus 로고    scopus 로고
    • Brain architecture management system
    • Bota,M., Dong, H.-W., & Swanson, L. (2005). Brain architecture management system. Neuroinformatics, 3, 15-47. (Pubitemid 41417633)
    • (2005) Neuroinformatics , vol.3 , Issue.1 , pp. 15-47
    • Bota, M.1    Dong, H.-W.2    Swanson, L.W.3
  • 9
    • 0038068998 scopus 로고    scopus 로고
    • Neuronames 2002
    • Bowden, D., & Dubach, M. (2003). Neuronames 2002. Neuroinformatics, 1, 43-59. (Pubitemid 36723175)
    • (2003) Neuroinformatics , vol.1 , Issue.1 , pp. 43-59
    • Bowden, D.M.1    Dubach, M.F.2
  • 11
    • 33846579086 scopus 로고    scopus 로고
    • Contour-based surface reconstruction using MPU implicit models
    • DOI 10.1016/j.gmod.2006.09.007, PII S1524070306000683
    • Braude, I., Marker, J., Museth, K., Nissanov, J., & Breen, D. (2007). Contour-based surface reconstruction using mpu implicit models. Graphical Models, 69(2), 139-157. (Pubitemid 46187207)
    • (2007) Graphical Models , vol.69 , Issue.2 , pp. 139-157
    • Braude, I.1    Marker, J.2    Museth, K.3    Nissanov, J.4    Breen, D.5
  • 13
    • 79953694010 scopus 로고    scopus 로고
    • Trends in programming languages for neuroscience simulations
    • Davison, A. P., Hines, M. L., & Muller, E. (2009). Trends in programming languages for neuroscience simulations. Frontiers in Neuroscience, 3(3), 374-380.
    • (2009) Frontiers in Neuroscience , vol.3 , Issue.3 , pp. 374-380
    • Davison, A.P.1    Hines, M.L.2    Muller, E.3
  • 15
    • 84856059440 scopus 로고    scopus 로고
    • The incf digital atlasing program: Report on digital atlasing standards in the rodent brain
    • doi:10.1038/npre.2009.4000.1
    • Hawrylycz, M. (2009). The incf digital atlasing program: Report on digital atlasing standards in the rodent brain. Nature Precedings. doi:10.1038/npre.2009.4000.1
    • (2009) Nature Precedings.
    • Hawrylycz, M.1
  • 18
    • 77956061614 scopus 로고    scopus 로고
    • Waxholm space: An image-based reference for coordinating mouse brain research
    • Johnson, G. A., Badea, A., Brandenburg, J., Cofer, G., Fubara, B., Liu, S., et al. (2010). Waxholm space: An image-based reference for coordinating mouse brain research. NeuroImage, 53(2), 365-72.
    • (2010) NeuroImage , vol.53 , Issue.2 , pp. 365-72
    • Johnson, G.A.1    Badea, A.2    Brandenburg, J.3    Cofer, G.4    Fubara, B.5    Liu, S.6
  • 19
    • 79953769728 scopus 로고    scopus 로고
    • Unified framework for development, deployment and robust testing of neuroimaging algorithms
    • Joshi, A., Scheinost, D., Okuda, H., Belhachemi, D., Murphy, I., Staib, L. H., et al. (2011). Unified framework for development, deployment and robust testing of neuroimaging algorithms. Neuroinformatics, 9(1), 69-84.
    • (2011) Neuroinformatics , vol.9 , Issue.1 , pp. 69-84
    • Joshi, A.1    Scheinost, D.2    Okuda, H.3    Belhachemi, D.4    Murphy, I.5    Staib, L.H.6
  • 25
    • 84859183306 scopus 로고    scopus 로고
    • Threedimensional interactive and stereotactic human brain atlas of white matter tracts
    • doi:10.1007/s12021-011-9118-x
    • Nowinski, W., Chua, B., Yang, G., & Qian, G. (2011). Threedimensional interactive and stereotactic human brain atlas of white matter tracts. Neuroinformatics. doi:10.1007/s12021-011-9118-x
    • (2011) Neuroinformatics.
    • Nowinski, W.1    Chua, B.2    Yang, G.3    Qian, G.4
  • 29
    • 33750933707 scopus 로고    scopus 로고
    • The NA-MIC Kit: ITK, VTK, pipelines, grids and 3D slicer as an open platform for the medical image computing community
    • 1625012, 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings
    • Pieper, S., Lorensen, B., Schroeder, W., & Kikinis, R. (2006). The na-mic kit: Itk, vtk, pipelines, grids and 3d slicer as an open platform for the medical image computing community. In Proc. IEEE intl. symp. on biomedical imaging ISBI: From nano to macro (pp. 698-701). IEEE. (Pubitemid 44732412)
    • (2006) 2006 3rd IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Proceedings , vol.2006 , pp. 698-701
    • Pieper, S.1    Lorensen, B.2    Schroeder, W.3    Kikinis, R.4
  • 30
    • 84861182121 scopus 로고    scopus 로고
    • Extracting activity ofindividual cell populations from multielectrode recordings
    • Potworowski, J., Glabska, H., Le? ski, S., and Wójcik, D. (2011). Extracting activity ofindividual cell populations from multielectrode recordings. BMC Neuroscience, 12(Suppl 1), P374.
    • (2011) BMC Neuroscience , vol.12 , Issue.SUPPL. 1
    • Potworowski, J.1    Glabska, H.2    Leski, S.3    Wójcik, D.4
  • 35
    • 33744930583 scopus 로고    scopus 로고
    • User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability
    • DOI 10.1016/j.neuroimage.2006.01.015, PII S1053811906000632
    • Yushkevich, P. A., Piven, J.,Hazlett,H. C., Smith, R. G.,Ho, S., Gee, J. C., et al. (2006). User-guided 3d active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. NeuroImage, 31(3), 1116-1128. (Pubitemid 43851334)
    • (2006) NeuroImage , vol.31 , Issue.3 , pp. 1116-1128
    • Yushkevich, P.A.1    Piven, J.2    Hazlett, H.C.3    Smith, R.G.4    Ho, S.5    Gee, J.C.6    Gerig, G.7
  • 36
    • 10044252268 scopus 로고    scopus 로고
    • Integrating brain data spatially: Spatial data infrastructure and atlas environment for online federation and analysis of brain images
    • Zaslavsky, I., He, H., Tran, J., Martone, M. E., & Gupta, A. (2004). Integrating brain data spatially: Spatial data infrastructure and atlas environment for online federation and analysis of brain images. In DEXA workshops (pp. 389-393).
    • (2004) DEXA Workshops , pp. 389-393
    • Zaslavsky, I.1    He, H.2    Tran, J.3    Martone, M.E.4    Gupta, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.