-
1
-
-
84859257158
-
Exploring the complexity of the HIV-1 fitness landscape
-
Kouyos, R.D.;Leventhal, G.E.;Hinkley, T.;Haddad, M.;Whitcomb, J.M.;Petropoulos, C.J.;Bonhoeffer, S. Exploring the complexity of the HIV-1 fitness landscape. PLoS Genetics 2012, 8, e1002551.
-
(2012)
PLoS Genetics
, vol.8
-
-
Kouyos, R.D.1
Leventhal, G.E.2
Hinkley, T.3
Haddad, M.4
Whitcomb, J.M.5
Petropoulos, C.J.6
Bonhoeffer, S.7
-
2
-
-
0000907353
-
The role of mutation, inbreeding, crossbreeding, and selection in evolution
-
Jones, D.F., Ed.; Brooklyn Botanical Garden: Ithaca, New York
-
Wright, S. The role of mutation, inbreeding, crossbreeding, and selection in evolution. In: International Proceedings of the Sixth International Congress on Genetics, Vol. 1; Jones, D.F., Ed.; Brooklyn Botanical Garden: Ithaca, New York, 1932; pp 356-366.
-
(1932)
International Proceedings of the Sixth International Congress on Genetics, Vol. 1
, pp. 356-366
-
-
Wright, S.1
-
3
-
-
0036622573
-
The persistence of the R.A. Fisher - Sewall Wright controversy
-
Skipper, R.A.Jr. The persistence of the R.A. Fisher - Sewall Wright controversy. Biology and Philosophy 2002, 17, 341-367.
-
(2002)
Biology and Philosophy
, vol.17
, pp. 341-367
-
-
Skipper Jr., R.A.1
-
4
-
-
0032425770
-
The theories of Fisher and Wright in the context of metapopulations: When nature does many small experiments
-
Wade, M.J.;Goodnight, C.J. The theories of Fisher and Wright in the context of metapopulations: When nature does many small experiments. Evolution 1998, 52, 1537-1553.
-
(1998)
Evolution
, vol.52
, pp. 1537-1553
-
-
Wade, M.J.1
Goodnight, C.J.2
-
5
-
-
50549201557
-
The relation of recombination to mutational advance
-
Muller, H.J. The relation of recombination to mutational advance. Mutation Research 1964, 1, 2-9.
-
(1964)
Mutation Research
, vol.1
, pp. 2-9
-
-
Muller, H.J.1
-
6
-
-
84973654655
-
Zur Quantentheorie der Moleküle
-
Born, M.;Oppenheimer, R. Zur Quantentheorie der Moleküle. Annalen der Physik 1927, 84, 457-484.
-
(1927)
Annalen der Physik
, vol.84
, pp. 457-484
-
-
Born, M.1
Oppenheimer, R.2
-
8
-
-
4444351490
-
Empirical force fields for biological macromolecules: Overview and issues
-
Mackerell, A.D.Jr. Empirical force fields for biological macromolecules: Overview and issues. J Comput Chem 2004, 25, 1584-1604.
-
(2004)
J Comput Chem
, vol.25
, pp. 1584-1604
-
-
Mackerell Jr., A.D.1
-
9
-
-
50649095790
-
Macromolecular modeling with Rosetta
-
Das, R.;Baker, D. Macromolecular modeling with Rosetta. Annu Rev Biochem 2008, 77, 363-382.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 363-382
-
-
Das, R.1
Baker, D.2
-
10
-
-
0030628825
-
Theory of protein folding: The energy landscape perspective
-
Onuchic, J.N.;Luthey-Schulten, Z.;Wolynes, P.G. Theory of protein folding: The energy landscape perspective. Annu Rev Phys Chem 1997, 48, 545-600.
-
(1997)
Annu Rev Phys Chem
, vol.48
, pp. 545-600
-
-
Onuchic, J.N.1
Luthey-Schulten, Z.2
Wolynes, P.G.3
-
11
-
-
12944327750
-
Energy landscapes and solved protein-folding problems
-
Wolynes, P.G. Energy landscapes and solved protein-folding problems. Phil Trans Roy Soc A 2005, 363, 453-467.
-
(2005)
Phil Trans Roy Soc A
, vol.363
, pp. 453-467
-
-
Wolynes, P.G.1
-
12
-
-
67650397253
-
Challenges in the computational design of proteins
-
Suárez, M.;Jaramillo, A. Challenges in the computational design of proteins. J Roy Soc Interface 2009, 6, S477-S491.
-
(2009)
J Roy Soc Interface
, vol.6
-
-
Suárez, M.1
Jaramillo, A.2
-
13
-
-
0023647382
-
Towards a general theory of adaptive walks on rugged landscapes
-
Kauffman, S.;Levin, S. Towards a general theory of adaptive walks on rugged landscapes. J Theor Biol 1987, 128, 11-45.
-
(1987)
J Theor Biol
, vol.128
, pp. 11-45
-
-
Kauffman, S.1
Levin, S.2
-
14
-
-
0024803111
-
The N-k model of rigged fitness landscapes and its application to the maturation of the immune response
-
Kauffman, S.A.;Weinberger, E.D. The N-k model of rigged fitness landscapes and its application to the maturation of the immune response. J Theor Biol 1989, 141, 211-245.
-
(1989)
J Theor Biol
, vol.141
, pp. 211-245
-
-
Kauffman, S.A.1
Weinberger, E.D.2
-
15
-
-
0028196714
-
From sequences to shapes and back. A case study in RNA secondary structures
-
Schuster, P.; Fontana, W.; Stadler, P.F.; Hofacker, I.L.; From sequences to shapes and back. A case study in RNA secondary structures. Proc Roy Soc B 1994, 255, 279-284.
-
(1994)
Proc Roy Soc B
, vol.255
, pp. 279-284
-
-
Schuster, P.1
Fontana, W.2
Stadler, P.F.3
Hofacker, I.L.4
-
16
-
-
0032577365
-
Continuity in evolution. On the nature of transitions
-
Fontana, W.;Schuster, P. Continuity in evolution. On the nature of transitions. Science 1998, 280, 1451-1455.
-
(1998)
Science
, vol.280
, pp. 1451-1455
-
-
Fontana, W.1
Schuster, P.2
-
17
-
-
0027657182
-
Statistics of RNA secondary structures
-
Fontana, W.;Konings, D.A.M.;Stadler, P.F.;Schuster, P. Statistics of RNA secondary structures. Biopolymers 1994, 33, 1389-1404.
-
(1994)
Biopolymers
, vol.33
, pp. 1389-1404
-
-
Fontana, W.1
Konings, D.A.M.2
Stadler, P.F.3
Schuster, P.4
-
18
-
-
84974325243
-
An approach to the experimental analysis of precellular evolution
-
Spiegelman S. An approach to the experimental analysis of precellular evolution. Q Rev Biophys 1971, 4, 213-253.
-
(1971)
Q Rev Biophys
, vol.4
, pp. 213-253
-
-
Spiegelman, S.1
-
19
-
-
0001980570
-
Darwinian selection of self-replicating RNA molecules
-
Biebricher, C.K. Darwinian selection of self-replicating RNA molecules. Evol Biol 1983, 16, 1-52.
-
(1983)
Evol Biol
, vol.16
, pp. 1-52
-
-
Biebricher, C.K.1
-
20
-
-
0015133749
-
Self-organization of matter and the evolution of biological macromolecules
-
Eigen, M. Self-organization of matter and the evolution of biological macromolecules. Naturwissenschaften 1971, 58, 465-523.
-
(1971)
Naturwissenschaften
, vol.58
, pp. 465-523
-
-
Eigen, M.1
-
21
-
-
85050209693
-
The molecular quasispecies
-
Eigen, M.;McCaskill, J.;Schuster, P. The molecular quasispecies. Adv Chem Phys 1989, 75, 149-263.
-
(1989)
Adv Chem Phys
, vol.75
, pp. 149-263
-
-
Eigen, M.1
McCaskill, J.2
Schuster, P.3
-
23
-
-
0021754248
-
Kinetics of RNA replication: Plus-minus asymmetry and double-strand formation
-
Biebricher, C.K.;Eigen M.;Gardiner, W.C.Jr. Kinetics of RNA replication: Plus-minus asymmetry and double-strand formation. Biochemistry 1984, 23, 3186-3194.
-
(1984)
Biochemistry
, vol.23
, pp. 3186-3194
-
-
Biebricher, C.K.1
Eigen, M.2
Gardiner Jr., W.C.3
-
24
-
-
0022384429
-
Kinetics of RNA replication: Competition and selection among self-replicating RNA species
-
Biebricher, C.K.;Eigen M.;Gardiner, W.C., Jr. Kinetics of RNA replication: Competition and selection among self-replicating RNA species. Biochemistry 1985, 24, 6550-6560.
-
(1985)
Biochemistry
, vol.24
, pp. 6550-6560
-
-
Biebricher, C.K.1
Eigen, M.2
Gardiner Jr., W.C.3
-
25
-
-
11844283982
-
Incorporation fidelity of the viral RNA-dependent RNA polymerase: A kinetic, thermodynamic, and structural perspective
-
Castro, C.;Arnold, J.J.;Cameron, C.E. Incorporation fidelity of the viral RNA-dependent RNA polymerase: A kinetic, thermodynamic, and structural perspective. Virus Res 2005, 107, 141-149.
-
(2005)
Virus Res
, vol.107
, pp. 141-149
-
-
Castro, C.1
Arnold, J.J.2
Cameron, C.E.3
-
26
-
-
0027105304
-
Quantitative analysis of mutation and selection in self-replcating RNA
-
Biebricher, C.K. Quantitative analysis of mutation and selection in self-replcating RNA. Adv Space Res 1992, 12, 191-197.
-
(1992)
Adv Space Res
, vol.12
, pp. 191-197
-
-
Biebricher, C.K.1
-
27
-
-
0030747157
-
RNA virus mutations and fitness for survival
-
Domingo, E.;Holland, J.J. RNA virus mutations and fitness for survival. Annu Rev Microbiol 1997, 51, 151-178.
-
(1997)
Annu Rev Microbiol
, vol.51
, pp. 151-178
-
-
Domingo, E.1
Holland, J.J.2
-
28
-
-
11844256382
-
Virus entry into error catastrophe as a new antiviral strategy
-
Ed. .
-
Domingo, E., Ed. Virus entry into error catastrophe as a new antiviral strategy. Virus Res 2005, 107, 115-228.
-
(2005)
Virus Res
, vol.107
, pp. 115-228
-
-
Domingo, E.1
-
29
-
-
33847247125
-
Theory of lethal mutagenesis for viruses
-
Bull, J.J.;Sanjuan, R.;Wilke, C.O. Theory of lethal mutagenesis for viruses. J Virol 2007, 81, 2930-2939.
-
(2007)
J Virol
, vol.81
, pp. 2930-2939
-
-
Bull, J.J.1
Sanjuan, R.2
Wilke, C.O.3
-
30
-
-
81155137795
-
Lethal mutagenesis, error thresholds, and the fight against viruses. Rigorous modeling is facilitated by a firm physical background
-
Schuster, P. Lethal mutagenesis, error thresholds, and the fight against viruses. Rigorous modeling is facilitated by a firm physical background. Complexity 2011, 17(2), 5-9.
-
(2011)
Complexity
, vol.17
, Issue.2
, pp. 5-9
-
-
Schuster, P.1
-
31
-
-
73649127602
-
The fitness effect of random mutations in single-stranded DNA and RNA bacteriophages
-
Domingo-Calap, P.;Cuevas, J.M.;Sanjuán, R. The fitness effect of random mutations in single-stranded DNA and RNA bacteriophages. PLoS Genetics 2009, 5, e1000742.
-
(2009)
PLoS Genetics
, vol.5
-
-
Domingo-Calap, P.1
Cuevas, J.M.2
Sanjuán, R.3
-
32
-
-
81555205677
-
The phenotype-fitness map in experimental evolution of phages
-
Bull, J.J.;Heineman. ;Wilke, C.O. The phenotype-fitness map in experimental evolution of phages. PLoS One 2011, 6, e27796.
-
(2011)
PLoS One
, vol.6
-
-
Bull, J.J.1
Heineman2
Wilke, C.O.3
-
34
-
-
80052318159
-
Ongoing phenotypic and genotypic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli
-
Kashiwagi, A.;Tetsuya, Y. Ongoing phenotypic and genotypic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli. PLoS Genetics 2011, 7, e1002188.
-
(2011)
PLoS Genetics
, vol.7
-
-
Kashiwagi, A.1
Tetsuya, Y.2
|