Biology and genome sequence of Streptococcus mutans phage M102AD

Applied and Environmental Microbiology

Volumn 78, Issue 7, 2012, Pages 2264-2271

  Delisle, Allan L ^a,d   Guo, Ming ^a,b   Chalmers, Natalia I ^a,e   Barcak, Gerard J ^b   Rousseau, Geneviève M ^c   Moineau, Sylvain ^c  

^a UNIVERSITY OF MARYLAND DENTAL SCHOOL   (United States)

^b UNIVERSITY OF MARYLAND SCHOOL OF MEDICINE   (United States)

^c UNIVERSITÉ LAVAL   (Canada)

^d Carolina Preserve   (United States)

^e UNIVERSITY OF MARYLAND   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATIC ANALYSIS; CARBOHYDRATE RECEPTORS; COMPARATIVE GENOMIC; DNA MOLECULES; GC CONTENTS; GENOME ANALYSIS; GENOME SEQUENCES; OPEN READING FRAME; POLYSACCHARIDE PRODUCTION; RANGE ANALYSIS; S. MUTANS; SEROTYPES; STREPTOCOCCUS MUTANS; STREPTOCOCCUS THERMOPHILUS PHAGE; VIRULENCE FACTORS;

ADSORPTION; BACTERIOPHAGES; BIOINFORMATICS; BIOLOGICAL MATERIALS; CARBOHYDRATES; GENETIC ENGINEERING; MASS SPECTROMETRY;

GENES;

PROTEOME; VIRUS PROTEIN;

ADSORPTION; BACTERIUM; CARBOHYDRATE; CELL ORGANELLE; COMPARATIVE STUDY; GENOME; HOST RANGE; INHIBITION; LINEARITY; MOLECULAR ANALYSIS; MUTATION; PROTEIN; VIRULENCE;

ARTICLE; BIOLOGY; CLASSIFICATION; DNA SEQUENCE; GENETICS; HUMAN; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYSIOLOGY; STREPTOCOCCUS MUTANS; STREPTOCOCCUS PHAGE; STREPTOCOCCUS THERMOPHILUS; TRANSMISSION ELECTRON MICROSCOPY; ULTRASTRUCTURE; VIROLOGY; VIRUS ATTACHMENT; VIRUS GENOME;

BASE SEQUENCE; COMPUTATIONAL BIOLOGY; GENOME, VIRAL; HUMANS; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PROTEOME; SEQUENCE ANALYSIS, DNA; STREPTOCOCCUS MUTANS; STREPTOCOCCUS PHAGES; STREPTOCOCCUS THERMOPHILUS; VIRAL STRUCTURAL PROTEINS; VIRUS ATTACHMENT;

STREPTOCOCCUS MUTANS; STREPTOCOCCUS THERMOPHILUS;

EID: 84861135668     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.07726-11     Document Type: Article

References (49)

1. Adams MH. 1959. Bacteriophages. Interscience Publishing, Inc, New York, NY.
2. Ajdić D, et al. 2002. Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen. Proc. Natl. Acad. Sci. U. S. A. 99:14434- 14439.
3. Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389- 3402.
4. Arber W. 2003. Elements for a theory of molecular evolution. Gene 317: 3-11.
5. Armau E, Bousque JL, Boue D, Tiraby G. 1988. Isolation of lytic bacteriophages for Streptococcus mutans and Streptococcus sobrinus. J. Dent. Res. 67:121.
6. Banks DJ, et al. 2004. Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolideresistant serotype M6 strain. J. Infect. Dis. 190:727-738.
7. Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248 -254.
8. Broadbent JR, McMahon DJ, Welker DL, Oberg CJ, Moineau S. 2003. Biochemistry, genetics, and applications of exopolysaccharide production in Streptococcus thermophilus: a review. J. Dairy Sci. 86:407- 423.
9. Chibani Azaïez SR, Fliss I, Simard RE, Moineau S. 1998. Monoclonal antibodies raised against native major capsid proteins of lactococcal c2-like bacteriophages. Appl. Environ. Microbiol. 64:4255- 4259.
10. Coykendall AL. 1989. Classification and identification of the viridans streptococci. Clin. Microbiol. Rev. 2:315-328.
11. Delisle AL, Rostkowski CA. 1993. Lytic bacteriophages of Streptoccoccus mutans. Curr. Microbiol. 27:163-167.
12. Delisle AL, Barcak GJ, Guo M. 2006. Isolation and expression of the lysis genes of Actinomyces naeslundii phage Av-1. Appl. Environ. Microbiol. 72:1110 -1117.
13. Deveau H, van Calsteren M-R, Moineau S. 2002. The effect of exopolysaccharides on phage-host interactions in Lactococcus lactis. Appl. Environ. Microbiol. 68:4364-4369.
14. Deveau H, Labrie SJ, Chopin M-C, Moineau S. 2006. Biodiversity and classification of lactococcal phages. Appl. Environ. Microbiol. 72:4338- 4346.
15. Donovan DM, et al. 2006. The cell lysis activity of the endolysin from the Streptococcus agalactiae bacteriophage B30 relies on the CHAP endopeptidase domain. Appl. Environ. Microbiol. 72:5108 -5112.
16. Duplessis M, Lévesque CM, Moineau S. 2006. Characterization of Streptococcus thermophilus host range phage mutants. Appl. Environ. Microbiol. 72:3036 -3041.
17. Fischetti VA. 2010. Bacteriophage endolysins: a novel anti-infective to control Gram-positive pathogens. Int. J. Med. Microbiol. 300:357-362.
18. Hitch G, Pratten J, Taylor PW. 2004. Isolation of bacteriophages from the oral cavity. Lett. Appl. Microbiol. 39:215-219.
19. Kricker M, Carlson K. 1994. Isolation of T4 phage DNA, p 455-456. In Karam JD, et al (ed), Molecular biology of bacteriophage T4. ASM Press, Washington, DC.
20. Labrie SJ, Moineau S. 2007. Abortive infection mechanisms and prophage sequences significantly influence the genetic make-up of emerging lytic lactococcal phages. J. Bacteriol. 189:1482-1487.
21. Labrie SJ, Samson JE, Moineau S. 2010. Bacteriophage resistance mechanisms. Nat. Rev. Microbiol. 8:317-327.
22. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
23. Laslett D, Canback B. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32:11-16.
24. Le Marrec C, et al. 1997. Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of mode of packaging and genetic determinants for major structural proteins. Appl. Environ. Microbiol. 63:3246 -3253.
25. Lévesque C, et al. 2005. Genomic organization and molecular analysis of virulent bacteriophage 2972 infecting an exopolysaccharide-producing Streptococcus thermophilus strain. Appl. Environ. Microbiol. 71:4057- 4068.
26. Loesche WJ. 1986. Role of Streptococcus mutans in human dental decay. Microbiol. Rev. 50:353-380.
27. López R, García E. 2004. Recent trends on the molecular biology of pneumococcal capsules, lytic enzymes, and bacteriophage. FEMS Microbiol. Rev. 28:553-580.
28. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
29. Lukashin AV, Borodovsky M. 1998. GenMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115.
30. Lü-Lü, et al. 1992. Chelating agents inhibit activity and prevent expression of streptococcal glucan-binding lectins. Infect. Immun. 60:3807-3813.
31. Morency H, Mota-Meira M, Lapointe G, Lacroix C, Lavoie MC. 2001. Comparison of the activity spectra against pathogens of bacterial strains producing a mutacin or a lantibiotic. Can. J. Microbiol. 47:322-331.
32. Nakano K, Nomura R, Nakagawa I, Hamada S, Ooshima T. 2004. Demonstration of Streptococcus mutans with a cell wall polysaccharide specific to a new serotype, k, in the human oral cavity. J. Clin. Microbiol. 42:198 -202.
33. Pombert J-F, Sistek V, Boissinot M, Frenette M. 2009. Evolutionary relationships among salivarius streptococci as inferred from multilocus phylogenies based on 16S rRNA-encoding, recA, secA, and secY gene sequences. BMC Microbiol. 9:232.
34. Pride DT, et al. 2011. Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res. 21:126 -136.
35. Pritchard DG, Gregory RL, Michalek SM, McGhee JR. 1986. Biochemical aspects of serotype carbohydrate antigens of Streptococcus mutans, p 39-49. In Hamada S, et al (ed), Molecular microbiology and immunology of Streptococcus mutans. Elsevier, Amsterdam, Netherlands.
36. Quiberoni A, Moineau S, Rousseau GM, Reinheimer J, Ackermann H-W. 2010. Review: Streptococcus thermophilus bacteriophages. Int. Dairy J. 20:657- 664.
37. Rousseau GM, Moineau S. 2009. Evolution of Lactococcus lactis phages within a cheese factory. Appl. Environ. Microbiol. 75:5336 -5344.
38. Scaltriti E, et al. 2009. Structure and function of phage p2 ORF34p2, a new type of single stranded DNA binding protein. Mol. Microbiol. 73:1156- 1170.
39. Schilling KM, Bowen WH. 1992. Glucans synthesized in situ in experimental salivary pellicle function as specific binding sites for Streptococcus mutans. Infect. Immun. 60:284 -295.
40. Schleifer KH, Kilpper-Bälz R, Kraus J, Gehring F. 1984. Relatedness and classification of Streptococcus mutans and " mutans-like" streptococci. J. Dent. Res. 63:1047-1050.
41. Shibata Y, Yamashita Y, van der Ploeg JR. 2009. The serotype-specific glucose side chain of rhamnose-glucose polysaccharides is essential for adsorption of bacteriophage M102 to Streptococcus mutans. FEMS Microbiol. Lett. 294:68 -73.
42. Spinelli S, et al. 2006. Lactococcal bacteriophage p2 receptor binding protein structure suggests a common ancestor gene with bacterial and mammalian viruses. Nat. Struct. Mol. Biol. 13:85- 89.
43. Staden R. 1996. The Staden sequence analysis package. Mol. Biotechnol. 5:233-241.
44. Stanley E, Walsh L, van der Zwet A, Fitzgerald GF, van Sinderen D. 2000. Identification of four loci isolated from two Streptococcus thermophilus phage genomes responsible for mediating bacteriophage resistance. FEMS Microbiol. Lett. 182:271-277.
45. Sutherland IW, Hughes KA, Skillman LC, Tait K. 2004. The interaction of phage and biofilms. FEMS Microbiol. Lett. 232:1- 6.
46. Tremblay DM, Moineau S. 1999. Complete genomic sequence of the lytic bacteriophage DT1 of Streptococcus thermophilus. Virology 255:63-76.
47. van der Ploeg JR. 2007. Genome sequence of Streptococcus mutans bacteriophage M102. FEMS Microbiol. Lett. 275:130 -138.
48. van der Ploeg JR. 2009. Analysis of CRISPR in Streptococcus mutans suggests frequent occurrence of acquired immunity against infection by M102-like bacteriophages. Microbiology 155:1966 -1976.
49. Whiley RA, Beighton D. 1998. Current classification of the oral streptococci. Oral Microbiol. Immunol. 13:195-216.