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Volumn 11, Issue 5, 2012, Pages 538-549

A widespread bacterial type VI secretion effector superfamily identified using a heuristic approach

Author keywords

[No Author keywords available]

Indexed keywords

AMIDASE; PEPTIDOGLYCAN; SECRETOME; UNCLASSIFIED DRUG;

EID: 84861126596     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2012.04.007     Document Type: Article
Times cited : (228)

References (56)
  • 1
    • 18244415313 scopus 로고    scopus 로고
    • Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes
    • V. Anantharaman, and L. Aravind Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes Genome Biol. 4 2003 R11
    • (2003) Genome Biol. , vol.4 , pp. 11
    • Anantharaman, V.1    Aravind, L.2
  • 3
    • 84858002430 scopus 로고    scopus 로고
    • Type VI secretion requires a dynamic contractile phage tail-like structure
    • M. Basler, M. Pilhofer, G.P. Henderson, G.J. Jensen, and J.J. Mekalanos Type VI secretion requires a dynamic contractile phage tail-like structure Nature 483 2012 182 186
    • (2012) Nature , vol.483 , pp. 182-186
    • Basler, M.1    Pilhofer, M.2    Henderson, G.P.3    Jensen, G.J.4    Mekalanos, J.J.5
  • 4
    • 0038403691 scopus 로고    scopus 로고
    • The CHAP domain: A large family of amidases including GSP amidase and peptidoglycan hydrolases
    • A. Bateman, and N.D. Rawlings The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases Trends Biochem. Sci. 28 2003 234 237
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 234-237
    • Bateman, A.1    Rawlings, N.D.2
  • 6
    • 69349101612 scopus 로고    scopus 로고
    • Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes
    • C.J. Blondel, J.C. Jiménez, I. Contreras, and C.A. Santiviago Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes BMC Genomics 10 2009 354
    • (2009) BMC Genomics , vol.10 , pp. 354
    • Blondel, C.J.1    Jiménez, J.C.2    Contreras, I.3    Santiviago, C.A.4
  • 7
    • 63049098068 scopus 로고    scopus 로고
    • Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: What can be learned from available microbial genomic resources?
    • F. Boyer, G. Fichant, J. Berthod, Y. Vandenbrouck, and I. Attree Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics 10 2009 104
    • (2009) BMC Genomics , vol.10 , pp. 104
    • Boyer, F.1    Fichant, G.2    Berthod, J.3    Vandenbrouck, Y.4    Attree, I.5
  • 8
    • 65349160904 scopus 로고    scopus 로고
    • Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA
    • A. Brencic, and S. Lory Determination of the regulon and identification of novel mRNA targets of Pseudomonas aeruginosa RsmA Mol. Microbiol. 72 2009 612 632
    • (2009) Mol. Microbiol. , vol.72 , pp. 612-632
    • Brencic, A.1    Lory, S.2
  • 10
    • 80053614751 scopus 로고    scopus 로고
    • Distinct pathways for modification of the bacterial cell wall by non-canonical D-amino acids
    • F. Cava, M.A. de Pedro, H. Lam, B.M. Davis, and M.K. Waldor Distinct pathways for modification of the bacterial cell wall by non-canonical D-amino acids EMBO J. 30 2011 3442 3453
    • (2011) EMBO J , vol.30 , pp. 3442-3453
    • Cava, F.1    De Pedro, M.A.2    Lam, H.3    Davis, B.M.4    Waldor, M.K.5
  • 11
    • 0036874116 scopus 로고    scopus 로고
    • Sexual isolation and speciation in bacteria
    • F.M. Cohan Sexual isolation and speciation in bacteria Genetica 116 2002 359 370
    • (2002) Genetica , vol.116 , pp. 359-370
    • Cohan, F.M.1
  • 12
    • 0036791896 scopus 로고    scopus 로고
    • Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors
    • A. Collmer, M. Lindeberg, T. Petnicki-Ocwieja, D.J. Schneider, and J.R. Alfano Genomic mining type III secretion system effectors in Pseudomonas syringae yields new picks for all TTSS prospectors Trends Microbiol. 10 2002 462 469
    • (2002) Trends Microbiol. , vol.10 , pp. 462-469
    • Collmer, A.1    Lindeberg, M.2    Petnicki-Ocwieja, T.3    Schneider, D.J.4    Alfano, J.R.5
  • 13
    • 79251528841 scopus 로고    scopus 로고
    • Modifications to the peptidoglycan backbone help bacteria to establish infection
    • K.M. Davis, and J.N. Weiser Modifications to the peptidoglycan backbone help bacteria to establish infection Infect. Immun. 79 2011 562 570
    • (2011) Infect. Immun. , vol.79 , pp. 562-570
    • Davis, K.M.1    Weiser, J.N.2
  • 14
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • R.C. Edgar MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 32 2004 1792 1797
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 15
    • 33747354636 scopus 로고    scopus 로고
    • Colicin M exerts its bacteriolytic effect via enzymatic degradation of undecaprenyl phosphate-linked peptidoglycan precursors
    • M. El Ghachi, A. Bouhss, H. Barreteau, T. Touzé, G. Auger, D. Blanot, and D. Mengin-Lecreulx Colicin M exerts its bacteriolytic effect via enzymatic degradation of undecaprenyl phosphate-linked peptidoglycan precursors J. Biol. Chem. 281 2006 22761 22772
    • (2006) J. Biol. Chem. , vol.281 , pp. 22761-22772
    • El Ghachi, M.1    Bouhss, A.2    Barreteau, H.3    Touzé, T.4    Auger, G.5    Blanot, D.6    Mengin-Lecreulx, D.7
  • 16
    • 35448970693 scopus 로고    scopus 로고
    • Folds and activities of peptidoglycan amidases
    • M. Firczuk, and M. Bochtler Folds and activities of peptidoglycan amidases FEMS Microbiol. Rev. 31 2007 676 691
    • (2007) FEMS Microbiol. Rev. , vol.31 , pp. 676-691
    • Firczuk, M.1    Bochtler, M.2
  • 18
    • 78149443620 scopus 로고    scopus 로고
    • Bacterial contact-dependent delivery systems
    • C.S. Hayes, S.K. Aoki, and D.A. Low Bacterial contact-dependent delivery systems Annu. Rev. Genet. 44 2010 71 90
    • (2010) Annu. Rev. Genet. , vol.44 , pp. 71-90
    • Hayes, C.S.1    Aoki, S.K.2    Low, D.A.3
  • 20
    • 77958182267 scopus 로고    scopus 로고
    • Type VI secretion: Not just for pathogenesis anymore
    • A.J. Jani, and P.A. Cotter Type VI secretion: not just for pathogenesis anymore Cell Host Microbe 8 2010 2 6
    • (2010) Cell Host Microbe , vol.8 , pp. 2-6
    • Jani, A.J.1    Cotter, P.A.2
  • 21
    • 29244477827 scopus 로고    scopus 로고
    • Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies
    • H.S. Kim, M.A. Schell, Y. Yu, R.L. Ulrich, S.H. Sarria, W.C. Nierman, and D. DeShazer Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies BMC Genomics 6 2005 174
    • (2005) BMC Genomics , vol.6 , pp. 174
    • Kim, H.S.1    Schell, M.A.2    Yu, Y.3    Ulrich, R.L.4    Sarria, S.H.5    Nierman, W.C.6    Deshazer, D.7
  • 22
    • 79960169250 scopus 로고    scopus 로고
    • Close encounters: Contact-dependent interactions in bacteria
    • A. Konovalova, and L. Sogaard-Andersen Close encounters: contact-dependent interactions in bacteria Mol. Microbiol. 81 2011 297 301
    • (2011) Mol. Microbiol. , vol.81 , pp. 297-301
    • Konovalova, A.1    Sogaard-Andersen, L.2
  • 24
    • 37349027967 scopus 로고    scopus 로고
    • Gac/Rsm signal transduction pathway of gamma-proteobacteria: From RNA recognition to regulation of social behaviour
    • K. Lapouge, M. Schubert, F.H. Allain, and D. Haas Gac/Rsm signal transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour Mol. Microbiol. 67 2008 241 253
    • (2008) Mol. Microbiol. , vol.67 , pp. 241-253
    • Lapouge, K.1    Schubert, M.2    Allain, F.H.3    Haas, D.4
  • 26
    • 78650591211 scopus 로고    scopus 로고
    • The Vibrio cholerae type VI secretion system displays antimicrobial properties
    • D.L. MacIntyre, S.T. Miyata, M. Kitaoka, and S. Pukatzki The Vibrio cholerae type VI secretion system displays antimicrobial properties Proc. Natl. Acad. Sci. USA 107 2010 19520 19524
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 19520-19524
    • MacIntyre, D.L.1    Miyata, S.T.2    Kitaoka, M.3    Pukatzki, S.4
  • 27
    • 46049085808 scopus 로고    scopus 로고
    • Identification of the L,D-transpeptidases for peptidoglycan cross-linking in Escherichia coli
    • S. Magnet, L. Dubost, A. Marie, M. Arthur, and L. Gutmann Identification of the L,D-transpeptidases for peptidoglycan cross-linking in Escherichia coli J. Bacteriol. 190 2008 4782 4785
    • (2008) J. Bacteriol. , vol.190 , pp. 4782-4785
    • Magnet, S.1    Dubost, L.2    Marie, A.3    Arthur, M.4    Gutmann, L.5
  • 28
    • 0035972889 scopus 로고    scopus 로고
    • Sexual isolation in bacteria
    • J. Majewski Sexual isolation in bacteria FEMS Microbiol. Lett. 199 2001 161 169
    • (2001) FEMS Microbiol. Lett. , vol.199 , pp. 161-169
    • Majewski, J.1
  • 31
    • 80055042052 scopus 로고    scopus 로고
    • The opportunistic pathogen Serratia marcescens utilizes type VI secretion to target bacterial competitors
    • S.L. Murdoch, K. Trunk, G. English, M.J. Fritsch, E. Pourkarimi, and S.J. Coulthurst The opportunistic pathogen Serratia marcescens utilizes type VI secretion to target bacterial competitors J. Bacteriol. 193 2011 6057 6069
    • (2011) J. Bacteriol. , vol.193 , pp. 6057-6069
    • Murdoch, S.L.1    Trunk, K.2    English, G.3    Fritsch, M.J.4    Pourkarimi, E.5    Coulthurst, S.J.6
  • 32
    • 36549035760 scopus 로고    scopus 로고
    • Nutritional cues control Pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum
    • K.L. Palmer, L.M. Aye, and M. Whiteley Nutritional cues control Pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum J. Bacteriol. 189 2007 8079 8087
    • (2007) J. Bacteriol. , vol.189 , pp. 8079-8087
    • Palmer, K.L.1    Aye, L.M.2    Whiteley, M.3
  • 34
    • 0037309246 scopus 로고    scopus 로고
    • Plant lectin-like bacteriocin from a rhizosphere-colonizing Pseudomonas isolate
    • A.H. Parret, G. Schoofs, P. Proost, and R. De Mot Plant lectin-like bacteriocin from a rhizosphere-colonizing Pseudomonas isolate J. Bacteriol. 185 2003 897 908
    • (2003) J. Bacteriol. , vol.185 , pp. 897-908
    • Parret, A.H.1    Schoofs, G.2    Proost, P.3    De Mot, R.4
  • 37
    • 33646897295 scopus 로고    scopus 로고
    • Identification of Burkholderia pseudomallei genes required for the intracellular life cycle and in vivo virulence
    • S. Pilatz, K. Breitbach, N. Hein, B. Fehlhaber, J. Schulze, B. Brenneke, L. Eberl, and I. Steinmetz Identification of Burkholderia pseudomallei genes required for the intracellular life cycle and in vivo virulence Infect. Immun. 74 2006 3576 3586
    • (2006) Infect. Immun. , vol.74 , pp. 3576-3586
    • Pilatz, S.1    Breitbach, K.2    Hein, N.3    Fehlhaber, B.4    Schulze, J.5    Brenneke, B.6    Eberl, L.7    Steinmetz, I.8
  • 38
    • 79959331942 scopus 로고    scopus 로고
    • The type VI secretion system: A multipurpose delivery system with a phage-like machinery
    • A.R. Records The type VI secretion system: a multipurpose delivery system with a phage-like machinery Mol. Plant Microbe Interact. 24 2011 751 757
    • (2011) Mol. Plant Microbe Interact. , vol.24 , pp. 751-757
    • Records, A.R.1
  • 39
    • 84864410913 scopus 로고    scopus 로고
    • Multi-species biofilms: How to avoid unfriendly neighbors
    • Published online January 24, 2012
    • O. Rendueles, and J.M. Ghigo Multi-species biofilms: how to avoid unfriendly neighbors FEMS Microbiol. Rev. 2012 Published online January 24, 2012
    • (2012) FEMS Microbiol. Rev.
    • Rendueles, O.1    Ghigo, J.M.2
  • 40
    • 0037727706 scopus 로고    scopus 로고
    • Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases
    • D.J. Rigden, M.J. Jedrzejas, and M.Y. Galperin Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases Trends Biochem. Sci. 28 2003 230 234
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 230-234
    • Rigden, D.J.1    Jedrzejas, M.J.2    Galperin, M.Y.3
  • 41
    • 0036406590 scopus 로고    scopus 로고
    • Bacteriocins: Evolution, ecology, and application
    • M.A. Riley, and J.E. Wertz Bacteriocins: evolution, ecology, and application Annu. Rev. Microbiol. 56 2002 117 137
    • (2002) Annu. Rev. Microbiol. , vol.56 , pp. 117-137
    • Riley, M.A.1    Wertz, J.E.2
  • 45
    • 78649326935 scopus 로고    scopus 로고
    • What is type VI secretion doing in all those bugs?
    • S. Schwarz, R.D. Hood, and J.D. Mougous What is type VI secretion doing in all those bugs? Trends Microbiol. 18 2010 531 537
    • (2010) Trends Microbiol. , vol.18 , pp. 531-537
    • Schwarz, S.1    Hood, R.D.2    Mougous, J.D.3
  • 47
    • 82155162352 scopus 로고    scopus 로고
    • Separate inputs modulate phosphorylation-dependent and -independent type VI secretion activation
    • J.M. Silverman, L.S. Austin, F. Hsu, K.G. Hicks, R.D. Hood, and J.D. Mougous Separate inputs modulate phosphorylation-dependent and -independent type VI secretion activation Mol. Microbiol. 82 2011 1277 1290
    • (2011) Mol. Microbiol. , vol.82 , pp. 1277-1290
    • Silverman, J.M.1    Austin, L.S.2    Hsu, F.3    Hicks, K.G.4    Hood, R.D.5    Mougous, J.D.6
  • 49
    • 80052206993 scopus 로고    scopus 로고
    • A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries
    • D. Veesler, and C. Cambillau A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries Microbiol. Mol. Biol. Rev. 75 2011 423 433
    • (2011) Microbiol. Mol. Biol. Rev. , vol.75 , pp. 423-433
    • Veesler, D.1    Cambillau, C.2
  • 50
    • 39149102149 scopus 로고    scopus 로고
    • Structural variation in the glycan strands of bacterial peptidoglycan
    • W. Vollmer Structural variation in the glycan strands of bacterial peptidoglycan FEMS Microbiol. Rev. 32 2008 287 306
    • (2008) FEMS Microbiol. Rev. , vol.32 , pp. 287-306
    • Vollmer, W.1
  • 53
    • 80051856839 scopus 로고    scopus 로고
    • The human gut microbiome: Ecology and recent evolutionary changes
    • J. Walter, and R. Ley The human gut microbiome: ecology and recent evolutionary changes Annu. Rev. Microbiol. 65 2011 411 429
    • (2011) Annu. Rev. Microbiol. , vol.65 , pp. 411-429
    • Walter, J.1    Ley, R.2
  • 55
    • 59349099210 scopus 로고    scopus 로고
    • The GacS-GacA two-component regulatory system of Pseudomonas fluorescens: A bacterial two-hybrid analysis
    • M.L. Workentine, L. Chang, H. Ceri, and R.J. Turner The GacS-GacA two-component regulatory system of Pseudomonas fluorescens: a bacterial two-hybrid analysis FEMS Microbiol. Lett. 292 2009 50 56
    • (2009) FEMS Microbiol. Lett. , vol.292 , pp. 50-56
    • Workentine, M.L.1    Chang, L.2    Ceri, H.3    Turner, R.J.4
  • 56
    • 36148956564 scopus 로고    scopus 로고
    • Dissection of a type VI secretion system in Edwardsiella tarda
    • J. Zheng, and K.Y. Leung Dissection of a type VI secretion system in Edwardsiella tarda Mol. Microbiol. 66 2007 1192 1206
    • (2007) Mol. Microbiol. , vol.66 , pp. 1192-1206
    • Zheng, J.1    Leung, K.Y.2


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