Toxicology ontology perspectives

Altex

Volumn 29, Issue 2, 2012, Pages 139-156

  Hardy, Barry ^a   Apic, Gordana ^b   Carthew, Philip ^c   Clark, Dominic ^d   Cook, David ^e   Dix, Ian ^e,f   Escher, Sylvia ^g   Hastings, Janna ^d   Heard, David J ^h   Jeliazkova, Nina ⁱ   Judson, Philip ^j   Matis Mitchell, Sherri ^e   Mitic, Dragana ^b   Myatt, Glenn ^k   Shah, Imran ^l   Spjuth, Ola ^m   Tcheremenskaia, Olga ⁿ   Toldo, Luca ^o   Watson, David ^j   White, Andrew ^c   Yang, Chihae ^p   more..

^a Douglas Connect   (Switzerland)

^b Cambridge Cell Networks Ltd   (United Kingdom)

^c UNILEVER RESEARCH   (United Kingdom)

^d EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^e ASTRAZENECA   (United Kingdom)

^f Pistoia Alliance   (United Kingdom)

^g FRAUNHOFER INSTITUTE FOR TOXICOLOGY AND EXPERIMENTAL MEDICINE   (Germany)

^h NOVARTIS PHARMA AG   (Switzerland)

ⁱ IDEACONSULT LTD   (Bulgaria)

^j LHASA LIMITED   (United Kingdom)

^k Leadscope Inc   (United States)

^l U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

^m UPPSALA UNIVERSITY   (Sweden)

ⁿ ISTITUTO SUPERIORE DI SANITÀ   (Italy)

^o MERCK KGAA   (Germany)

^p Altamira   (United States)

more..

Author keywords

Data resources; Framework; Ontology; Software applications; Toxicology

Indexed keywords

TOXIC SUBSTANCE;

COMPUTER ANALYSIS; COMPUTER MODEL; COMPUTER PROGRAM; DATA BASE; HUMAN; IN VITRO STUDY; IN VIVO STUDY; INTERNET; NOMENCLATURE; NONHUMAN; REVIEW; TOXICITY TESTING;

EID: 84860805424     PISSN: 09467785     EISSN: None     Source Type: Journal    
DOI: 10.14573/altex.2012.2.139     Document Type: Review

References (15)

1. ECETOC Technical Report No. 66 (1995). Skin Irritation and Corrosion: Reference Chemicals Data Bank. http://www.ecetoc.org/technical-reports.
2. Gerberick, G. F., Ryan, C. A., Kern, P. S., et al. (2005). Compilation of historical local lymph node assay data for the evaluation of skin sensitization alternatives. Dermatitis 16, 157-202.
3. Hardy, B., Douglas, N., Helma, C., et al. (2010). Collaborative development of predictive toxicology applications. J Cheminform. 2, 7.
4. Hardy, B., Apic, G., Carthew, P., et al. (2012). A toxicology ontology roadmap. ALTEX 29, 129-137.
5. Goble, C. A., Bhagat, J., Aleksejevs, S., et al. (2010). Myexperiment: a repository and social network for the sharing of bioinformatics workflows. Nucleic Acids Res. 38, Web Server issue (Jul 2010), W677-682.
6. Lilienblum, W., Dekant, W., Foth, H., et al. (2008). Alternative methods to safety studies in experimental animals: role in the risk assessment of chemicals under the new European Chemicals Legislation (REACH). Regulat. Toxicol. 82, 211-236.
7. Mathäß, T., Haase, P., Kitano, H., and Toldo, L. (2010). SBML2S-MW: Bridging System Biology with semantic web technologies for biomedical knowledge acquisition and hypothesis elicitation. In A. Facchiano and P. Romano (eds.), Proceedings of NETAB-BBCC 2010 Biological Wikis, November 29 - December 1, 2010, Napoli, Italy. http://www.molgen.mpg.de/~lappe/stehr/NETAB-BBCC-2010- Proceedings.pdf.
8. Renne, R., Brix, A., Harkema, J., et al. (2009). Proliferative and nonproliferative lesions of the rat and mouse respiratory tract. Toxicol. Pathol. 37, 5-73.
9. Shah, I. and Wambaugh, J. (2010). Virtual tissues in toxicology. J. Toxicol. Environ. Health B Crit. Rev. 13, 314-328.
10. Smith, B., Ashburner, M., Rosse, C., et al. (2007). The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255. http://www.nature.com/nbt/journal/v25/n11/full/ nbt1346.html
11. Spjuth, O., Helmus, T., Willighagen, E. L., et al. (2007). Bioclipse: an open source workbench for chemo- and bioinformatics. BMC Bioinformatics 8, 59.
12. Spjuth, O., Eklund, M., Helgee, E. A., et al. (2011). Integrated decision support for assessing chemical liabilities. J. Chem. Inf. Model. 51, 1840-1847.
13. Spjuth, O., Willighagen, E. L., Guha, R., et al. (2010). Towards interoperable and reproducible QSAR analyses: Exchange of datasets. J. Cheminform. 2, 5.
14. Steinbeck, C., Han, Y., Kuhn, S., et al. (2003). The Chemistry Development Kit (CDK): an open-source Java library for Chemo- and Bioinformatics. J. Chem. Inf. Comput. Sci. 43, 493-500.
15. Thoolen, B., Maronpot, R. R., Harada, T., et al. (2010). Proliferative and nonproliferative lesions of the rat and mouse hepatobiliary system. Toxicol. Pathol. 38, 5-81.