-
1
-
-
0038730770
-
Do viruses form lineages across different domains of life?
-
Bamford DH (2003) Do viruses form lineages across different domains of life? Res Microbiol 154:231-236.
-
(2003)
Res Microbiol
, vol.154
, pp. 231-236
-
-
Bamford, D.H.1
-
2
-
-
41049087598
-
Structural co-evolution of viruses and cells in the primordial world
-
Jalasvuori M, Bamford JK (2008) Structural co-evolution of viruses and cells in the primordial world. Orig Life Evol Biosph 38:165-181.
-
(2008)
Orig Life Evol Biosph
, vol.38
, pp. 165-181
-
-
Jalasvuori, M.1
Bamford, J.K.2
-
4
-
-
79956105255
-
What does virus evolution tell us about virus origins?
-
Holmes EC (2011) What does virus evolution tell us about virus origins? J Virol 85: 5247-5251.
-
(2011)
J Virol
, vol.85
, pp. 5247-5251
-
-
Holmes, E.C.1
-
5
-
-
42949104034
-
Microbial life at high salt concentrations: Phylogenetic and metabolic diversity
-
Oren A (2008) Microbial life at high salt concentrations: Phylogenetic and metabolic diversity. Saline Syst 4:2.
-
(2008)
Saline Syst
, vol.4
, pp. 2
-
-
Oren, A.1
-
8
-
-
84856563173
-
Viruses from the hypersaline environment
-
eds Ventosa A, Oren A, Ma Y (Springer, Berlin)
-
Roine E, Oksanen HM (2011) Viruses from the hypersaline environment. Halophiles and Hypersaline Environments, eds Ventosa A, Oren A, Ma Y (Springer, Berlin), pp 153-172.
-
(2011)
Halophiles and Hypersaline Environments
, pp. 153-172
-
-
Roine, E.1
Oksanen, H.M.2
-
10
-
-
77949408671
-
Virus-host interactions in environments with a wide range of ionic strengths
-
Kukkaro P, Bamford DH (2009) Virus-host interactions in environments with a wide range of ionic strengths. Environ Microbiol Reports 1:71-77.
-
(2009)
Environ Microbiol Reports
, vol.1
, pp. 71-77
-
-
Kukkaro, P.1
Bamford, D.H.2
-
11
-
-
84856573429
-
Global network of specific virus-host interactions in hypersaline environments
-
Atanasova NS, Roine E, Oren A, Bamford DH, Oksanen HM (2012) Global network of specific virus-host interactions in hypersaline environments. Environ Microbiol 14: 426-440.
-
(2012)
Environ Microbiol
, vol.14
, pp. 426-440
-
-
Atanasova, N.S.1
Roine, E.2
Oren, A.3
Bamford, D.H.4
Oksanen, H.M.5
-
12
-
-
2642679289
-
Isolation and characterization of phage F9-11 from a lysogenic Deleya halophila strain
-
Calvo C, de la Paz AG, Bejar V, Quesada E, Ramos-Cormenzana A (1988) Isolation and characterization of phage F9-11 from a lysogenic Deleya halophila strain. Curr Microbiol 17:49-53.
-
(1988)
Curr Microbiol
, vol.17
, pp. 49-53
-
-
Calvo, C.1
De La Paz, A.G.2
Bejar, V.3
Quesada, E.4
Ramos-Cormenzana, A.5
-
13
-
-
0036200510
-
Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds
-
Antón J, et al. (2002) Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. Int J Syst Evol Microbiol 52:485-491. (Pubitemid 34257407)
-
(2002)
International Journal of Systematic and Evolutionary Microbiology
, vol.52
, Issue.2
, pp. 485-491
-
-
Anton, J.1
Oren, A.2
Benlloch, S.3
Rodriguez-Valera, F.4
Amann, R.5
Rossello-Mora, R.6
-
15
-
-
0033578669
-
Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures
-
DOI 10.1016/S0092-8674(00)81516-0
-
Benson SD, Bamford JK, Bamford DH, Burnett RM (1999) Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures. Cell 98:825-833. (Pubitemid 29446899)
-
(1999)
Cell
, vol.98
, Issue.6
, pp. 825-833
-
-
Benson, S.D.1
Bamford, J.K.H.2
Bamford, D.H.3
Burnett, R.M.4
-
16
-
-
27944491964
-
What does structure tell us about virus evolution?
-
DOI 10.1016/j.sbi.2005.10.012, PII S0959440X05002009, Catalysis and Regulation/Proteins
-
Bamford DH, Grimes JM, Stuart DI (2005) What does structure tell us about virus evolution? Curr Opin Struct Biol 15:655-663. (Pubitemid 41668522)
-
(2005)
Current Opinion in Structural Biology
, vol.15
, Issue.6
, pp. 655-663
-
-
Bamford, D.H.1
Grimes, J.M.2
Stuart, D.I.3
-
17
-
-
56349116764
-
Virus evolution: How far does the double beta-barrel viral lineage extend?
-
Krupovic M, Bamford DH (2008) Virus evolution: How far does the double beta-barrel viral lineage extend? Nat Rev Microbiol 6:941-948.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 941-948
-
-
Krupovic, M.1
Bamford, D.H.2
-
18
-
-
84455199962
-
Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly
-
Krupovic M, Bamford DH (2011) Double-stranded DNA viruses: 20 families and only five different architectural principles for virion assembly. Curr Opin Virol 1:118-124.
-
(2011)
Curr Opin Virol
, vol.1
, pp. 118-124
-
-
Krupovic, M.1
Bamford, D.H.2
-
19
-
-
78649424877
-
What does it take to make a virus: The concept of the viral "self"
-
eds Stockley PG, Twarock R (Imperial College Press, London)
-
Abrescia NGA, et al. (2010) What does it take to make a virus: The concept of the viral "self". Emerging Topics in Physical Virology, eds Stockley PG, Twarock R (Imperial College Press, London), pp 35-58.
-
(2010)
Emerging Topics in Physical Virology
, pp. 35-58
-
-
Abrescia, N.G.A.1
-
20
-
-
52649169247
-
Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2
-
Abrescia NG, et al. (2008) Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2. Mol Cell 31:749-761.
-
(2008)
Mol Cell
, vol.31
, pp. 749-761
-
-
Abrescia, N.G.1
-
21
-
-
79960194345
-
Insights into the evolution of a complex virus from the crystal structure of vaccinia virus D13
-
Bahar MW, Graham SC, Stuart DI, Grimes JM (2011) Insights into the evolution of a complex virus from the crystal structure of vaccinia virus D13. Structure 19: 1011-1020.
-
(2011)
Structure
, vol.19
, pp. 1011-1020
-
-
Bahar, M.W.1
Graham, S.C.2
Stuart, D.I.3
Grimes, J.M.4
-
22
-
-
0037069358
-
The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus
-
DOI 10.1073/pnas.232580699
-
Nandhagopal N, et al. (2002) The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus. Proc Natl Acad Sci USA 99:14758-14763. (Pubitemid 35334557)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.23
, pp. 14758-14763
-
-
Nandhagopal, N.1
Simpson, A.A.2
Gurnon, J.R.3
Yan, X.4
Baker, T.S.5
Graves, M.V.6
Van Etten, J.L.7
Rossmann, M.G.8
-
23
-
-
2442686734
-
The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life
-
DOI 10.1073/pnas.0401773101
-
Rice G, et al. (2004) The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life. Proc Natl Acad Sci USA 101:7716-7720. (Pubitemid 38658095)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.20
, pp. 7716-7720
-
-
Rice, G.1
Tang, L.2
Stedman, K.3
Roberto, F.4
Spuhler, J.5
Gillitzer, E.6
Johnson, J.E.7
Douglas, T.8
Young, M.9
-
24
-
-
0042890357
-
Structural and phylogenetic analysis of adenovirus hexons by use of high-resolution x-ray crystallographic, molecular modeling, and sequence-based methods
-
DOI 10.1128/JVI.77.17.9553-9566.2003
-
Rux JJ, Kuser PR, Burnett RM (2003) Structural and phylogenetic analysis of adeno-virus hexons by use of high-resolution x-ray crystallographic, molecular modeling, and sequence-based methods. J Virol 77:9553-9566. (Pubitemid 37011050)
-
(2003)
Journal of Virology
, vol.77
, Issue.17
, pp. 9553-9566
-
-
Rux, J.J.1
Kuser, P.R.2
Burnett, R.M.3
-
25
-
-
45849129793
-
Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus
-
DOI 10.1073/pnas.0801758105
-
Jäälinoja HT, et al. (2008) Structure and host-cell interaction of SH1, a membrane-containing, halophilic euryarchaeal virus. Proc Natl Acad Sci USA 105:8008-8013. (Pubitemid 351904698)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.23
, pp. 8008-8013
-
-
Jaalinoja, H.T.1
Roine, E.2
Laurinmaki, P.3
Kivela, H.M.4
Bamford, D.H.5
Butcher, S.J.6
-
26
-
-
48949087957
-
Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus
-
Jaatinen ST, Happonen LJ, Laurinmäki P, Butcher SJ, Bamford DH (2008) Biochemical and structural characterisation of membrane-containing icosahedral dsDNA bacteriophages infecting thermophilic Thermus thermophilus. Virology 379:10-19.
-
(2008)
Virology
, vol.379
, pp. 10-19
-
-
Jaatinen, S.T.1
Happonen, L.J.2
Laurinmäki, P.3
Butcher, S.J.4
Bamford, D.H.5
-
27
-
-
84860825761
-
Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions
-
10.1128/JVI.06666-11
-
Jaakkola ST, et al. (2012) Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions. J Virol, 10.1128/JVI.06666-11.
-
(2012)
J Virol
-
-
Jaakkola, S.T.1
-
28
-
-
1842738141
-
Biological effects of dilution of Dead Sea brine with seawater: Implications for the planning of the Red Sea-Dead Sea "Peace Conduit"
-
DOI 10.1016/j.jmarsys.2003.11.017, PII S0924796303001866
-
Oren A, et al. (2004) Biological effects of dilution of Dead Sea brine with seawater: Implications for the planning of the Red Sea - Dead Sea "Peace Conduit". J Mar Syst 46:121-131. (Pubitemid 38473367)
-
(2004)
Journal of Marine Systems
, vol.46
, Issue.1-4
, pp. 121-131
-
-
Oren, A.1
Gavrieli, I.2
Gavrieli, J.3
Kohen, M.4
Lati, J.5
Aharoni, M.6
-
29
-
-
70350724345
-
Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes
-
Vaisman N, Oren A (2009) Salisaeta longa gen. nov., sp. nov., a red, halophilic member of the Bacteroidetes. Int J Syst Evol Microbiol 59:2571-2574.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 2571-2574
-
-
Vaisman, N.1
Oren, A.2
-
30
-
-
0032871834
-
Finding families for genomic ORFans
-
DOI 10.1093/bioinformatics/15.9.759
-
Fischer D, Eisenberg D (1999) Finding families for genomic ORFans. Bioinformatics 15: 759-762. (Pubitemid 29484338)
-
(1999)
Bioinformatics
, vol.15
, Issue.9
, pp. 759-762
-
-
Fischer, D.1
Eisenberg, D.2
-
31
-
-
49149117900
-
Exploring the prokaryotic virosphere
-
Comeau AM, et al. (2008) Exploring the prokaryotic virosphere. Res Microbiol 159: 306-313.
-
(2008)
Res Microbiol
, vol.159
, pp. 306-313
-
-
Comeau, A.M.1
-
32
-
-
0024462161
-
Viral proteins containing the purine NTP-binding sequence pattern
-
Gorbalenya AE, Koonin EV (1989) Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res 17:8413-8440. (Pubitemid 19273853)
-
(1989)
Nucleic Acids Research
, vol.17
, Issue.21
, pp. 8413-8440
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
33
-
-
17144366252
-
In vitro DNA packaging of PRD1: A common mechanism for internal-membrane viruses
-
DOI 10.1016/j.jmb.2005.03.002
-
Strömsten NJ, Bamford DH, Bamford JKH (2005) In vitro DNA packaging of PRD1: A common mechanism for internal-membrane viruses. J Mol Biol 348:617-629. (Pubitemid 40515674)
-
(2005)
Journal of Molecular Biology
, vol.348
, Issue.3
, pp. 617-629
-
-
Stromsten, N.J.1
Bamford, D.H.2
Bamford, J.K.H.3
-
34
-
-
0001607723
-
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold
-
Walker JE, Saraste M, Runswick MJ, Gay NJ (1982) Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold. EMBO J 1:945-951.
-
(1982)
EMBO J
, vol.1
, pp. 945-951
-
-
Walker, J.E.1
Saraste, M.2
Runswick, M.J.3
Gay, N.J.4
-
35
-
-
0036360431
-
Natrialba magadii virus phiCh1: First complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon
-
DOI 10.1046/j.1365-2958.2002.03064.x
-
Klein R, et al. (2002) Natrialba magadii virus phiCh1: First complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon. Mol Microbiol 45:851-863. (Pubitemid 34989190)
-
(2002)
Molecular Microbiology
, vol.45
, Issue.3
, pp. 851-863
-
-
Klein, R.1
Baranyi, U.2
Rossler, N.3
Greineder, B.4
Scholz, H.5
Witte, A.6
-
37
-
-
0034716946
-
Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages
-
Juhala RJ, et al. (2000) Genomic sequences of bacteriophages HK97 and HK022: Pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol 299:27-51.
-
(2000)
J Mol Biol
, vol.299
, pp. 27-51
-
-
Juhala, R.J.1
-
38
-
-
16844367255
-
SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake
-
DOI 10.1016/j.virol.2005.01.043
-
Porter K, et al. (2005) SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake. Virology 335:22-33. (Pubitemid 40489049)
-
(2005)
Virology
, vol.335
, Issue.1
, pp. 22-33
-
-
Porter, K.1
Kukkaro, P.2
Bamford, J.K.H.3
Bath, C.4
Kivela, H.M.5
Dyall-Smith, M.L.6
Bamford, D.H.7
-
39
-
-
77953533217
-
The acylhalocapnines of halophilic bacteria: Structural details of unusual sulfonate sphingoids
-
Baronio M, Lattanzio VM, Vaisman N, Oren A, Corcelli A (2010) The acylhalocapnines of halophilic bacteria: Structural details of unusual sulfonate sphingoids. J Lipid Res 51:1878-1885.
-
(2010)
J Lipid Res
, vol.51
, pp. 1878-1885
-
-
Baronio, M.1
Lattanzio, V.M.2
Vaisman, N.3
Oren, A.4
Corcelli, A.5
-
40
-
-
57749191949
-
Characterization of polar membrane lipids of the extremely halophilic bacterium Salinibacter ruber and possible role of cardiolipin
-
Lattanzio VM, Baronio M, Oren A, Russell NJ, Corcelli A (2009) Characterization of polar membrane lipids of the extremely halophilic bacterium Salinibacter ruber and possible role of cardiolipin. Biochim Biophys Acta 1791:25-31.
-
(2009)
Biochim Biophys Acta
, vol.1791
, pp. 25-31
-
-
Lattanzio, V.M.1
Baronio, M.2
Oren, A.3
Russell, N.J.4
Corcelli, A.5
-
41
-
-
27944481316
-
Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35
-
DOI 10.1016/j.str.2005.08.020, PII S0969212605003631
-
Laurinmäki PA, Huiskonen JT, Bamford DH, Butcher SJ (2005) Membrane proteins modulate the bilayer curvature in the bacterial virus Bam35. Structure 13:1819-1828. (Pubitemid 41772950)
-
(2005)
Structure
, vol.13
, Issue.12
, pp. 1819-1828
-
-
Laurinmaki, P.A.1
Huiskonen, J.T.2
Bamford, D.H.3
Butcher, S.J.4
-
42
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle CA (2007) Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 5:801-812.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
43
-
-
0024475207
-
High abundance of viruses found in aquatic environments
-
Bergh O, Børsheim KY, Bratbak G, Heldal M (1989) High abundance of viruses found in aquatic environments. Nature 340:467-468.
-
(1989)
Nature
, vol.340
, pp. 467-468
-
-
Bergh, O.1
Børsheim, K.Y.2
Bratbak, G.3
Heldal, M.4
-
44
-
-
49149119258
-
Phages across the biosphere: Contrasts of viruses in soil and aquatic environments
-
Srinivasiah S, et al. (2008) Phages across the biosphere: Contrasts of viruses in soil and aquatic environments. Res Microbiol 159:349-357.
-
(2008)
Res Microbiol
, vol.159
, pp. 349-357
-
-
Srinivasiah, S.1
-
45
-
-
0027374807
-
HF1 and HF2: Novel bacteriophages of halophilic archaea
-
Nuttall SD, Dyall-Smith ML (1993) HF1 and HF2: Novel bacteriophages of halophilic archaea. Virology 197:678-684.
-
(1993)
Virology
, vol.197
, pp. 678-684
-
-
Nuttall, S.D.1
Dyall-Smith, M.L.2
-
46
-
-
0023472472
-
Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
-
DOI 10.1016/0003-2697(87)90587-2
-
Schägger H, von Jagow G (1987) Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem 166:368-379. (Pubitemid 18004907)
-
(1987)
Analytical Biochemistry
, vol.166
, Issue.2
, pp. 368-379
-
-
Schagger, H.1
Von Jagow, G.2
-
47
-
-
0024475084
-
Quantiation of the adsorption and penetration stages of bacteriophage φ6 infection
-
DOI 10.1016/0042-6822(89)90530-8
-
Olkkonen VM, Bamford DH (1989) Quantitation of the adsorption and penetration stages of bacteriophage φ 6 infection. Virology 171:229-238. (Pubitemid 19180791)
-
(1989)
Virology
, vol.171
, Issue.1
, pp. 229-238
-
-
Olkkonen, V.M.1
Bamford, D.H.2
-
49
-
-
0033377664
-
EMAN: Semiautomated software for high-resolution single-particle reconstructions
-
DOI 10.1006/jsbi.1999.4174
-
Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: Semiautomated software for high-resolution single-particle reconstructions. J Struct Biol 128:82-97. (Pubitemid 30013436)
-
(1999)
Journal of Structural Biology
, vol.128
, Issue.1
, pp. 82-97
-
-
Ludtke, S.J.1
Baldwin, P.R.2
Chiu, W.3
|