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Volumn 101, Issue 11, 2011, Pages 1435-1439

A next-generation approach to the characterization of a non-model plant transcriptome

Author keywords

Expressed sequence tags; Next generation sequencing technologies; Non model species; Transcriptome

Indexed keywords

CICER ARIETINUM;

EID: 84860776638     PISSN: 00113891     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (31)

References (22)
  • 1
    • 52949096084 scopus 로고    scopus 로고
    • Next-generation DNA sequencing methods
    • Mardis, E. R., Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet., 2008, 9, 387-402.
    • (2008) Annu. Rev. Genomics Hum. Genet. , vol.9 , pp. 387-402
    • Mardis, E.R.1
  • 2
    • 67651033745 scopus 로고    scopus 로고
    • Short-read sequencing technologies for transcriptional analyses
    • Simon, S. A. et al., Short-read sequencing technologies for transcriptional analyses. Annu. Rev. Plant Biol., 2009, 60, 305-333.
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 305-333
    • Simon, S.A.1
  • 3
    • 68949186256 scopus 로고    scopus 로고
    • Next-generation sequencing technologies and their implications for crop genetics and breeding
    • Varshney, R. K. et al., Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol., 2009, 27, 522-530.
    • (2009) Trends Biotechnol. , vol.27 , pp. 522-530
    • Varshney, R.K.1
  • 4
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - the next generation
    • Metzker, M. L., Sequencing technologies - the next generation. Nature Rev. Genet., 2010, 11, 31-46.
    • (2010) Nature Rev. Genet. , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 5
    • 70350218818 scopus 로고    scopus 로고
    • Applications of new sequencing technologies for transcriptome analysis
    • Morozova, O., Hirst, M. and Marra, M. A., Applications of new sequencing technologies for transcriptome analysis. Annu. Rev. Genomics Hum. Genet., 2009, 10, 135-151.
    • (2009) Annu. Rev. Genomics Hum. Genet. , vol.10 , pp. 135-151
    • Morozova, O.1    Hirst, M.2    Marra, M.A.3
  • 6
    • 67650915750 scopus 로고    scopus 로고
    • Shedding light on an extremophile lifestyle through transcriptomics
    • Dassanayake, M. et al., Shedding light on an extremophile lifestyle through transcriptomics. New Phytol., 2009, 183, 764-775.
    • (2009) New Phytol. , vol.183 , pp. 764-775
    • Dassanayake, M.1
  • 7
    • 67649085779 scopus 로고    scopus 로고
    • Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection
    • Barakat, A. et al., Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection. BMC Plant Biol., 2009, 9, 11.
    • (2009) BMC Plant Biol. , vol.9 , pp. 11
    • Barakat, A.1
  • 8
    • 70449516453 scopus 로고    scopus 로고
    • Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing
    • Wang, W. et al., Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing. BMC Genomics, 2009, 10, 10.
    • (2009) BMC Genomics , vol.10 , pp. 10
    • Wang, W.1
  • 9
    • 70349662156 scopus 로고    scopus 로고
    • Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development
    • Alagna, F. et al., Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development. BMC Genomics, 2009, 10, 15.
    • (2009) BMC Genomics , vol.10 , pp. 15
    • Alagna, F.1
  • 10
    • 79952045110 scopus 로고    scopus 로고
    • Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds
    • Shi, C. Y. et al., Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics, 2011, 12, 131.
    • (2011) BMC Genomics , vol.12 , pp. 131
    • Shi, C.Y.1
  • 11
    • 80053643325 scopus 로고    scopus 로고
    • Functional genomics of a living fossil tree Ginkgo based on next generation sequencing technology
    • doi:10.1111/j.1399-3054.2011.01500.x2011
    • Lin, X. et al., Functional genomics of a living fossil tree Ginkgo based on next generation sequencing technology. Physiol. Plant., 2011, doi:10.1111/j.1399-3054.2011.01500.x.
    • (2011) Physiol. Plant.
    • Lin, X.1
  • 12
    • 79952501970 scopus 로고    scopus 로고
    • Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: pathway description and gene discovery for production of next-generation biofuels
    • Rismani-Yazdi, H. et al., Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: pathway description and gene discovery for production of next-generation biofuels. BMC Genomics, 2011, 12, 148.
    • (2011) BMC Genomics , vol.12 , pp. 148
    • Rismani-Yazdi, H.1
  • 13
    • 79955769112 scopus 로고    scopus 로고
    • Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing
    • Franssen, S. U. et al., Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing. BMC Genomics, 2011, 12, 227.
    • (2011) BMC Genomics , vol.12 , pp. 227
    • Franssen, S.U.1
  • 14
    • 79959472680 scopus 로고    scopus 로고
    • The first insight into the tissue specific Taxus transcriptome via illumina second generation sequencing
    • Hao, da C. et al., The first insight into the tissue specific Taxus transcriptome via illumina second generation sequencing. PLoS One, 2011, 6, e21220.
    • (2011) PLoS One , vol.6
    • da Hao, C.1
  • 15
    • 79960892661 scopus 로고    scopus 로고
    • De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity
    • Iorizzo, M. et al., De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity. BMC Genomics, 2011, 12, 389.
    • (2011) BMC Genomics , vol.12 , pp. 389
    • Iorizzo, M.1
  • 16
    • 79951828683 scopus 로고    scopus 로고
    • De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification
    • Garg, R. et al., De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res., 2011, 18, 53-63.
    • (2011) DNA Res. , vol.18 , pp. 53-63
    • Garg, R.1
  • 17
    • 79961197602 scopus 로고    scopus 로고
    • Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development
    • Garg, R. et al., Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol., 2011, 156, 1678-1771.
    • (2011) Plant Physiol. , vol.156 , pp. 1678-1771
    • Garg, R.1
  • 18
    • 77957926979 scopus 로고    scopus 로고
    • Comparing de novo assemblers for 454 transcriptome data
    • Kumar, S. and Blaxter, M. L., Comparing de novo assemblers for 454 transcriptome data. BMC Genomics, 2010, 11, 571.
    • (2010) BMC Genomics , vol.11 , pp. 571
    • Kumar, S.1    Blaxter, M.L.2
  • 19
    • 81255129604 scopus 로고    scopus 로고
    • Pyrosequencing data reveals tissue-specific expression of lineage-specific transcripts in chickpea
    • Garg, R. and Jain, M., Pyrosequencing data reveals tissue-specific expression of lineage-specific transcripts in chickpea. Plant Signal. Behav., 2011, 6, 1868-1870.
    • (2011) Plant Signal. Behav. , vol.6 , pp. 1868-1870
    • Garg, R.1    Jain, M.2
  • 20
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni, J. C. et al., RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res., 2008, 18, 1509-1517.
    • (2008) Genome Res. , vol.18 , pp. 1509-1517
    • Marioni, J.C.1
  • 21
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • Mortazavi, A. et al., Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods, 2008, 5, 621-628.
    • (2008) Nature Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.