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Volumn 7, Issue 5, 2012, Pages

Hypocotyl transcriptome reveals auxin regulation of growth-promoting genes through GA-dependent and -independent pathways

Author keywords

[No Author keywords available]

Indexed keywords

AUXIN; F BOX PROTEIN; GIBBERELLIC ACID; PHYTOCHROME; PROTEIN AFB; PROTEIN TIR1; REPRESSOR PROTEIN; TRANSCRIPTOME; UNCLASSIFIED DRUG; ARABIDOPSIS PROTEIN; AUXIN RECEPTOR, PLANT; CELL SURFACE RECEPTOR; INDOLEACETIC ACID DERIVATIVE; TIR1 PROTEIN, ARABIDOPSIS; VEGETABLE PROTEIN;

EID: 84860727705     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036210     Document Type: Article
Times cited : (116)

References (106)
  • 2
    • 71149122029 scopus 로고    scopus 로고
    • Mechanism of auxin-regulated gene expression in plants
    • Chapman EJ, Estelle M, (2009) Mechanism of auxin-regulated gene expression in plants. Annu Rev Genet 43: 265-285.
    • (2009) Annu Rev Genet , vol.43 , pp. 265-285
    • Chapman, E.J.1    Estelle, M.2
  • 3
    • 77957821589 scopus 로고    scopus 로고
    • The power of auxin in plants
    • Leyser O, (2010) The power of auxin in plants. Plant Physiol 154: 501-505.
    • (2010) Plant Physiol , vol.154 , pp. 501-505
    • Leyser, O.1
  • 4
    • 77950298199 scopus 로고    scopus 로고
    • Recent progress in auxin biology
    • Tromas A, Perrot-Rechenmann C, (2010) Recent progress in auxin biology. C R Biol 333: 297-306.
    • (2010) C R Biol , vol.333 , pp. 297-306
    • Tromas, A.1    Perrot-Rechenmann, C.2
  • 5
    • 0035999463 scopus 로고    scopus 로고
    • Auxin-responsive gene expression: genes, promoters and regulatory factors
    • Hagen G, Guilfoyle T, (2002) Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol Biol 49: 373-385.
    • (2002) Plant Mol Biol , vol.49 , pp. 373-385
    • Hagen, G.1    Guilfoyle, T.2
  • 6
    • 33644823601 scopus 로고    scopus 로고
    • Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana
    • Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, et al. (2005) Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. The Plant cell 17: 3282-3300.
    • (2005) The Plant Cell , vol.17 , pp. 3282-3300
    • Overvoorde, P.J.1    Okushima, Y.2    Alonso, J.M.3    Chan, A.4    Chang, C.5
  • 7
    • 0033545881 scopus 로고    scopus 로고
    • Activation and repression of transcription by auxin-response factors
    • Ulmasov T, Hagen G, Guilfoyle TJ, (1999) Activation and repression of transcription by auxin-response factors. Proc Natl Acad Sci U S A 96: 5844-5849.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 5844-5849
    • Ulmasov, T.1    Hagen, G.2    Guilfoyle, T.J.3
  • 8
    • 0037329943 scopus 로고    scopus 로고
    • The roles of auxin response factor domains in auxin-responsive transcription
    • Tiwari SB, Hagen G, Guilfoyle T, (2003) The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15: 533-543.
    • (2003) Plant Cell , vol.15 , pp. 533-543
    • Tiwari, S.B.1    Hagen, G.2    Guilfoyle, T.3
  • 10
    • 19344363731 scopus 로고    scopus 로고
    • Interdependency of brassinosteroid and auxin signaling in Arabidopsis
    • Nemhauser JL, Mockler TC, Chory J, (2004) Interdependency of brassinosteroid and auxin signaling in Arabidopsis. PLoS Biol 2: E258.
    • (2004) PLoS Biol , vol.2
    • Nemhauser, J.L.1    Mockler, T.C.2    Chory, J.3
  • 11
    • 45749109424 scopus 로고    scopus 로고
    • Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis
    • Muller B, Sheen J, (2008) Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis. Nature 453: 1094-1097.
    • (2008) Nature , vol.453 , pp. 1094-1097
    • Muller, B.1    Sheen, J.2
  • 12
    • 0035209617 scopus 로고    scopus 로고
    • Roles and activities of Aux/IAA proteins in Arabidopsis
    • Reed JW, (2001) Roles and activities of Aux/IAA proteins in Arabidopsis. Trends Plant Sci 6: 420-425.
    • (2001) Trends Plant Sci , vol.6 , pp. 420-425
    • Reed, J.W.1
  • 13
    • 4444368566 scopus 로고    scopus 로고
    • Auxin signals-turning genes on and turning cells around
    • Berleth T, Krogan NT, Scarpella E, (2004) Auxin signals-turning genes on and turning cells around. Curr Opin Plant Biol 7: 553-563.
    • (2004) Curr Opin Plant Biol , vol.7 , pp. 553-563
    • Berleth, T.1    Krogan, N.T.2    Scarpella, E.3
  • 14
    • 0028082429 scopus 로고
    • Early auxin-induced genes encode short-lived nuclear proteins
    • Abel S, Oeller PW, Theologis A, (1994) Early auxin-induced genes encode short-lived nuclear proteins. Proc Natl Acad Sci U S A 91: 326-330.
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 326-330
    • Abel, S.1    Oeller, P.W.2    Theologis, A.3
  • 15
    • 0030671551 scopus 로고    scopus 로고
    • Protein-protein interactions among the Aux/IAA proteins
    • Kim J, Harter K, Theologis A, (1997) Protein-protein interactions among the Aux/IAA proteins. Proc Natl Acad Sci U S A 94: 11786-11791.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 11786-11791
    • Kim, J.1    Harter, K.2    Theologis, A.3
  • 16
    • 0034756346 scopus 로고    scopus 로고
    • Rapid degradation of auxin/indoleacetic acid proteins requires conserved amino acids of domain II and is proteasome dependent
    • Ramos JA, Zenser N, Leyser O, Callis J, (2001) Rapid degradation of auxin/indoleacetic acid proteins requires conserved amino acids of domain II and is proteasome dependent. Plant Cell 13: 2349-2360.
    • (2001) Plant Cell , vol.13 , pp. 2349-2360
    • Ramos, J.A.1    Zenser, N.2    Leyser, O.3    Callis, J.4
  • 17
    • 43149093764 scopus 로고    scopus 로고
    • Overexpression of the non-canonical Aux/IAA genes causes auxin-related aberrant phenotypes in Arabidopsis
    • Sato A, Yamamoto KT, (2008) Overexpression of the non-canonical Aux/IAA genes causes auxin-related aberrant phenotypes in Arabidopsis. Physiol Plant 133: 397-405.
    • (2008) Physiol Plant , vol.133 , pp. 397-405
    • Sato, A.1    Yamamoto, K.T.2
  • 18
    • 0036645372 scopus 로고    scopus 로고
    • The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning
    • Hamann T, Benkova E, Baurle I, Kientz M, Jurgens G, (2002) The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes Dev 16: 1610-1615.
    • (2002) Genes Dev , vol.16 , pp. 1610-1615
    • Hamann, T.1    Benkova, E.2    Baurle, I.3    Kientz, M.4    Jurgens, G.5
  • 19
    • 20044394137 scopus 로고    scopus 로고
    • Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19
    • Okushima Y, Overvoorde PJ, Arima K, Alonso JM, Chan A, et al. (2005) Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19. Plant Cell 17: 444-463.
    • (2005) Plant Cell , vol.17 , pp. 444-463
    • Okushima, Y.1    Overvoorde, P.J.2    Arima, K.3    Alonso, J.M.4    Chan, A.5
  • 20
    • 4344648019 scopus 로고    scopus 로고
    • Convergence of signaling pathways in the control of differential cell growth in Arabidopsis
    • Li H, Johnson P, Stepanova A, Alonso JM, Ecker JR, (2004) Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Dev Cell 7: 193-204.
    • (2004) Dev Cell , vol.7 , pp. 193-204
    • Li, H.1    Johnson, P.2    Stepanova, A.3    Alonso, J.M.4    Ecker, J.R.5
  • 21
    • 34249789596 scopus 로고    scopus 로고
    • ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis
    • Okushima Y, Fukaki H, Onoda M, Theologis A, Tasaka M, (2007) ARF7 and ARF19 regulate lateral root formation via direct activation of LBD/ASL genes in Arabidopsis. Plant Cell 19: 118-130.
    • (2007) Plant Cell , vol.19 , pp. 118-130
    • Okushima, Y.1    Fukaki, H.2    Onoda, M.3    Theologis, A.4    Tasaka, M.5
  • 22
    • 7044228135 scopus 로고    scopus 로고
    • Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition
    • Tian CE, Muto H, Higuchi K, Matamura T, Tatematsu K, et al. (2004) Disruption and overexpression of auxin response factor 8 gene of Arabidopsis affect hypocotyl elongation and root growth habit, indicating its possible involvement in auxin homeostasis in light condition. Plant J 40: 333-343.
    • (2004) Plant J , vol.40 , pp. 333-343
    • Tian, C.E.1    Muto, H.2    Higuchi, K.3    Matamura, T.4    Tatematsu, K.5
  • 23
    • 40449131628 scopus 로고    scopus 로고
    • TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis
    • Szemenyei H, Hannon M, Long JA, (2008) TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science 319: 1384-1386.
    • (2008) Science , vol.319 , pp. 1384-1386
    • Szemenyei, H.1    Hannon, M.2    Long, J.A.3
  • 24
    • 19544386804 scopus 로고    scopus 로고
    • The Arabidopsis F-box protein TIR1 is an auxin receptor
    • Kepinski S, Leyser O, (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435: 446-451.
    • (2005) Nature , vol.435 , pp. 446-451
    • Kepinski, S.1    Leyser, O.2
  • 25
    • 19544379019 scopus 로고    scopus 로고
    • The F-box protein TIR1 is an auxin receptor
    • Dharmasiri N, Dharmasiri S, Estelle M, (2005) The F-box protein TIR1 is an auxin receptor. Nature 435: 441-445.
    • (2005) Nature , vol.435 , pp. 441-445
    • Dharmasiri, N.1    Dharmasiri, S.2    Estelle, M.3
  • 26
    • 21344458139 scopus 로고    scopus 로고
    • Plant development is regulated by a family of auxin receptor F box proteins
    • Dharmasiri N, Dharmasiri S, Weijers D, Lechner E, Yamada M, et al. (2005) Plant development is regulated by a family of auxin receptor F box proteins. Dev Cell 9: 109-119.
    • (2005) Dev Cell , vol.9 , pp. 109-119
    • Dharmasiri, N.1    Dharmasiri, S.2    Weijers, D.3    Lechner, E.4    Yamada, M.5
  • 27
    • 79952816765 scopus 로고    scopus 로고
    • The AFB4 auxin receptor is a negative regulator of auxin signaling in seedlings
    • Greenham K, Santner A, Castillejo C, Mooney S, Sairanen I, et al. (2011) The AFB4 auxin receptor is a negative regulator of auxin signaling in seedlings. Curr Biol 21: 520-525.
    • (2011) Curr Biol , vol.21 , pp. 520-525
    • Greenham, K.1    Santner, A.2    Castillejo, C.3    Mooney, S.4    Sairanen, I.5
  • 28
    • 77957829871 scopus 로고    scopus 로고
    • A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity
    • De Rybel B, Vassileva V, Parizot B, Demeulenaere M, Grunewald W, et al. (2010) A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Curr Biol 20: 1697-1706.
    • (2010) Curr Biol , vol.20 , pp. 1697-1706
    • de Rybel, B.1    Vassileva, V.2    Parizot, B.3    Demeulenaere, M.4    Grunewald, W.5
  • 31
    • 0036895839 scopus 로고    scopus 로고
    • Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3
    • Zhao Y, Hull AK, Gupta NR, Goss KA, Alonso J, et al. (2002) Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev 16: 3100-3112.
    • (2002) Genes Dev , vol.16 , pp. 3100-3112
    • Zhao, Y.1    Hull, A.K.2    Gupta, N.R.3    Goss, K.A.4    Alonso, J.5
  • 33
    • 66149118628 scopus 로고    scopus 로고
    • Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors
    • Shin J, Kim K, Kang H, Zulfugarov IS, Bae G, et al. (2009) Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors. Proc Natl Acad Sci U S A 106: 7660-7665.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 7660-7665
    • Shin, J.1    Kim, K.2    Kang, H.3    Zulfugarov, I.S.4    Bae, G.5
  • 34
    • 2942685745 scopus 로고    scopus 로고
    • Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis
    • Bauer D, Viczian A, Kircher S, Nobis T, Nitschke R, et al. (2004) Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell 16: 1433-1445.
    • (2004) Plant Cell , vol.16 , pp. 1433-1445
    • Bauer, D.1    Viczian, A.2    Kircher, S.3    Nobis, T.4    Nitschke, R.5
  • 35
    • 41149087678 scopus 로고    scopus 로고
    • Mechanistic duality of transcription factor function in phytochrome signaling
    • Al-Sady B, Kikis EA, Monte E, Quail PH, (2008) Mechanistic duality of transcription factor function in phytochrome signaling. Proc Natl Acad Sci U S A 105: 2232-2237.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 2232-2237
    • Al-Sady, B.1    Kikis, E.A.2    Monte, E.3    Quail, P.H.4
  • 36
    • 37749031518 scopus 로고    scopus 로고
    • Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors
    • Lorrain S, Allen T, Duek PD, Whitelam GC, Fankhauser C, (2008) Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors. Plant J 53: 312-323.
    • (2008) Plant J , vol.53 , pp. 312-323
    • Lorrain, S.1    Allen, T.2    Duek, P.D.3    Whitelam, G.C.4    Fankhauser, C.5
  • 38
    • 80051810079 scopus 로고    scopus 로고
    • PHYTOCHROME-INTERACTING FACTOR 4 and 5 (PIF4 and PIF5) Activate the Homeobox ATHB2 and Auxin Inducible IAA29 Genes in the Coincidence Mechanism Underlying Photoperiodic Control of Plant Growth of Arabidopsis thaliana
    • doi:10.1093/pcp/pcr076
    • Kunihiro A, Yamashino T, Nakamichi N, Niwa Y, Nakanishi H, et al. (2011) PHYTOCHROME-INTERACTING FACTOR 4 and 5 (PIF4 and PIF5) Activate the Homeobox ATHB2 and Auxin Inducible IAA29 Genes in the Coincidence Mechanism Underlying Photoperiodic Control of Plant Growth of Arabidopsis thaliana. Plant Cell Physiol doi:10.1093/pcp/pcr076.
    • (2011) Plant Cell Physiol
    • Kunihiro, A.1    Yamashino, T.2    Nakamichi, N.3    Niwa, Y.4    Nakanishi, H.5
  • 39
    • 34447520296 scopus 로고    scopus 로고
    • Rhythmic growth explained by coincidence between internal and external cues
    • Nozue K, Covington MF, Duek PD, Lorrain S, Fankhauser C, et al. (2007) Rhythmic growth explained by coincidence between internal and external cues. Nature 448: 358-361.
    • (2007) Nature , vol.448 , pp. 358-361
    • Nozue, K.1    Covington, M.F.2    Duek, P.D.3    Lorrain, S.4    Fankhauser, C.5
  • 40
    • 62549099049 scopus 로고    scopus 로고
    • Plant development: PIF4 integrates diverse environmental signals
    • Lucyshyn D, Wigge PA, (2009) Plant development: PIF4 integrates diverse environmental signals. Curr Biol 19: R265-266.
    • (2009) Curr Biol , vol.19
    • Lucyshyn, D.1    Wigge, P.A.2
  • 41
    • 61449135764 scopus 로고    scopus 로고
    • High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4
    • Koini MA, Alvey L, Allen T, Tilley CA, Harberd NP, et al. (2009) High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4. Curr Biol 19: 408-413.
    • (2009) Curr Biol , vol.19 , pp. 408-413
    • Koini, M.A.1    Alvey, L.2    Allen, T.3    Tilley, C.A.4    Harberd, N.P.5
  • 42
    • 65249184988 scopus 로고    scopus 로고
    • The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana
    • Niwa Y, Yamashino T, Mizuno T, (2009) The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana. Plant Cell Physiol 50: 838-854.
    • (2009) Plant Cell Physiol , vol.50 , pp. 838-854
    • Niwa, Y.1    Yamashino, T.2    Mizuno, T.3
  • 43
    • 13744263437 scopus 로고    scopus 로고
    • bHLH class transcription factors take centre stage in phytochrome signalling
    • Duek PD, Fankhauser C, (2005) bHLH class transcription factors take centre stage in phytochrome signalling. Trends Plant Sci 10: 51-54.
    • (2005) Trends Plant Sci , vol.10 , pp. 51-54
    • Duek, P.D.1    Fankhauser, C.2
  • 44
    • 0033783633 scopus 로고    scopus 로고
    • Hormonal interactions in the control of Arabidopsis hypocotyl elongation
    • Collett CE, Harberd NP, Leyser O, (2000) Hormonal interactions in the control of Arabidopsis hypocotyl elongation. Plant Physiol 124: 553-562.
    • (2000) Plant Physiol , vol.124 , pp. 553-562
    • Collett, C.E.1    Harberd, N.P.2    Leyser, O.3
  • 45
    • 54449092268 scopus 로고    scopus 로고
    • New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery
    • Savaldi-Goldstein S, Baiga TJ, Pojer F, Dabi T, Butterfield C, et al. (2008) New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. Proc Natl Acad Sci U S A 105: 15190-15195.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 15190-15195
    • Savaldi-Goldstein, S.1    Baiga, T.J.2    Pojer, F.3    Dabi, T.4    Butterfield, C.5
  • 46
    • 0034078213 scopus 로고    scopus 로고
    • The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue
    • Harper RM, Stowe-Evans EL, Luesse DR, Muto H, Tatematsu K, et al. (2000) The NPH4 locus encodes the auxin response factor ARF7, a conditional regulator of differential growth in aerial Arabidopsis tissue. Plant Cell 12: 757-770.
    • (2000) Plant Cell , vol.12 , pp. 757-770
    • Harper, R.M.1    Stowe-Evans, E.L.2    Luesse, D.R.3    Muto, H.4    Tatematsu, K.5
  • 47
    • 33751374289 scopus 로고    scopus 로고
    • Opposite root growth phenotypes of hy5 versus hy5 hyh mutants correlate with increased constitutive auxin signaling
    • Sibout R, Sukumar P, Hettiarachchi C, Holm M, Muday GK, et al. (2006) Opposite root growth phenotypes of hy5 versus hy5 hyh mutants correlate with increased constitutive auxin signaling. PLoS Genet 2: e202.
    • (2006) PLoS Genet , vol.2
    • Sibout, R.1    Sukumar, P.2    Hettiarachchi, C.3    Holm, M.4    Muday, G.K.5
  • 48
    • 1042267600 scopus 로고    scopus 로고
    • MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana
    • Tatematsu K, Kumagai S, Muto H, Sato A, Watahiki MK, et al. (2004) MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana. Plant Cell 16: 379-393.
    • (2004) Plant Cell , vol.16 , pp. 379-393
    • Tatematsu, K.1    Kumagai, S.2    Muto, H.3    Sato, A.4    Watahiki, M.K.5
  • 49
    • 0036007983 scopus 로고    scopus 로고
    • Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of Arabidopsis
    • Fukaki H, Tameda S, Masuda H, Tasaka M, (2002) Lateral root formation is blocked by a gain-of-function mutation in the SOLITARY-ROOT/IAA14 gene of Arabidopsis. Plant J 29: 153-168.
    • (2002) Plant J , vol.29 , pp. 153-168
    • Fukaki, H.1    Tameda, S.2    Masuda, H.3    Tasaka, M.4
  • 50
    • 0027944590 scopus 로고
    • The axr2-1 mutation of Arabidopsis thaliana is a gain-of-function mutation that disrupts an early step in auxin response
    • Timpte C, Wilson AK, Estelle M, (1994) The axr2-1 mutation of Arabidopsis thaliana is a gain-of-function mutation that disrupts an early step in auxin response. Genetics 138: 1239-1249.
    • (1994) Genetics , vol.138 , pp. 1239-1249
    • Timpte, C.1    Wilson, A.K.2    Estelle, M.3
  • 51
    • 10344259658 scopus 로고    scopus 로고
    • The IAA1 protein is encoded by AXR5 and is a substrate of SCF(TIR1)
    • Yang X, Lee S, So JH, Dharmasiri S, Dharmasiri N, et al. (2004) The IAA1 protein is encoded by AXR5 and is a substrate of SCF(TIR1). Plant J 40: 772-782.
    • (2004) Plant J , vol.40 , pp. 772-782
    • Yang, X.1    Lee, S.2    So, J.H.3    Dharmasiri, S.4    Dharmasiri, N.5
  • 52
    • 0025292811 scopus 로고
    • A dominant mutation in Arabidopsis confers resistance to auxin, ethylene and abscisic acid
    • Wilson AK, Pickett FB, Turner JC, Estelle M, (1990) A dominant mutation in Arabidopsis confers resistance to auxin, ethylene and abscisic acid. Mol Gen Genet 222: 377-383.
    • (1990) Mol Gen Genet , vol.222 , pp. 377-383
    • Wilson, A.K.1    Pickett, F.B.2    Turner, J.C.3    Estelle, M.4
  • 53
    • 80053583176 scopus 로고    scopus 로고
    • miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves
    • Si-Ammour A, Windels D, Arn-Bouldoires E, Kutter C, Ailhas J, et al. (2011) miR393 and secondary siRNAs regulate expression of the TIR1/AFB2 auxin receptor clade and auxin-related development of Arabidopsis leaves. Plant physiology 157: 683-691.
    • (2011) Plant Physiology , vol.157 , pp. 683-691
    • Si-Ammour, A.1    Windels, D.2    Arn-Bouldoires, E.3    Kutter, C.4    Ailhas, J.5
  • 54
    • 0033065554 scopus 로고    scopus 로고
    • Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis
    • Dowson-Day MJ, Millar AJ, (1999) Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant J 17: 63-71.
    • (1999) Plant J , vol.17 , pp. 63-71
    • Dowson-Day, M.J.1    Millar, A.J.2
  • 55
    • 33750061319 scopus 로고    scopus 로고
    • Mutations in an auxin receptor homolog AFB5 and in SGT1b confer resistance to synthetic picolinate auxins and not to 2,4-dichlorophenoxyacetic acid or indole-3-acetic acid in Arabidopsis
    • Walsh TA, Neal R, Merlo AO, Honma M, Hicks GR, et al. (2006) Mutations in an auxin receptor homolog AFB5 and in SGT1b confer resistance to synthetic picolinate auxins and not to 2,4-dichlorophenoxyacetic acid or indole-3-acetic acid in Arabidopsis. Plant Physiol 142: 542-552.
    • (2006) Plant Physiol , vol.142 , pp. 542-552
    • Walsh, T.A.1    Neal, R.2    Merlo, A.O.3    Honma, M.4    Hicks, G.R.5
  • 56
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 57
    • 60449090629 scopus 로고    scopus 로고
    • Comprehensive transcriptome analysis of auxin responses in Arabidopsis
    • Paponov IA, Paponov M, Teale W, Menges M, Chakrabortee S, et al. (2008) Comprehensive transcriptome analysis of auxin responses in Arabidopsis. Mol Plant 1: 321-337.
    • (2008) Mol Plant , vol.1 , pp. 321-337
    • Paponov, I.A.1    Paponov, M.2    Teale, W.3    Menges, M.4    Chakrabortee, S.5
  • 59
    • 33751006151 scopus 로고    scopus 로고
    • RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis
    • Hong F, Breitling R, McEntee CW, Wittner BS, Nemhauser JL, et al. (2006) RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis. Bioinformatics 22: 2825-2827.
    • (2006) Bioinformatics , vol.22 , pp. 2825-2827
    • Hong, F.1    Breitling, R.2    McEntee, C.W.3    Wittner, B.S.4    Nemhauser, J.L.5
  • 60
    • 4344571581 scopus 로고    scopus 로고
    • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
    • Breitling R, Armengaud P, Amtmann A, Herzyk P, (2004) Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments. FEBS Lett 573: 83-92.
    • (2004) FEBS Lett , vol.573 , pp. 83-92
    • Breitling, R.1    Armengaud, P.2    Amtmann, A.3    Herzyk, P.4
  • 61
    • 33746777825 scopus 로고    scopus 로고
    • Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses
    • Nemhauser JL, Hong F, Chory J, (2006) Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell 126: 467-475.
    • (2006) Cell , vol.126 , pp. 467-475
    • Nemhauser, J.L.1    Hong, F.2    Chory, J.3
  • 62
    • 34548310412 scopus 로고    scopus 로고
    • Multilevel interactions between ethylene and auxin in Arabidopsis roots
    • Stepanova AN, Yun J, Likhacheva AV, Alonso JM, (2007) Multilevel interactions between ethylene and auxin in Arabidopsis roots. Plant Cell 19: 2169-2185.
    • (2007) Plant Cell , vol.19 , pp. 2169-2185
    • Stepanova, A.N.1    Yun, J.2    Likhacheva, A.V.3    Alonso, J.M.4
  • 63
    • 54749087162 scopus 로고    scopus 로고
    • A morning-specific phytohormone gene expression program underlying rhythmic plant growth
    • Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, et al. (2008) A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol 6: e225.
    • (2008) PLoS Biol , vol.6
    • Michael, T.P.1    Breton, G.2    Hazen, S.P.3    Priest, H.4    Mockler, T.C.5
  • 64
    • 34548206704 scopus 로고    scopus 로고
    • The circadian clock regulates auxin signaling and responses in Arabidopsis
    • Covington MF, Harmer SL, (2007) The circadian clock regulates auxin signaling and responses in Arabidopsis. PLoS Biol 5: e222.
    • (2007) PLoS Biol , vol.5
    • Covington, M.F.1    Harmer, S.L.2
  • 65
    • 44949120699 scopus 로고    scopus 로고
    • Expression of gibberellin 20-oxidase1 (AtGA20ox1) in Arabidopsis seedlings with altered auxin status is regulated at multiple levels
    • Desgagne-Penix I, Sponsel VM, (2008) Expression of gibberellin 20-oxidase1 (AtGA20ox1) in Arabidopsis seedlings with altered auxin status is regulated at multiple levels. J Exp Bot 59: 2057-2070.
    • (2008) J Exp Bot , vol.59 , pp. 2057-2070
    • Desgagne-Penix, I.1    Sponsel, V.M.2
  • 66
    • 33750086018 scopus 로고    scopus 로고
    • Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis
    • Frigerio M, Alabadi D, Perez-Gomez J, Garcia-Carcel L, Phillips AL, et al. (2006) Transcriptional regulation of gibberellin metabolism genes by auxin signaling in Arabidopsis. Plant Physiol 142: 553-563.
    • (2006) Plant Physiol , vol.142 , pp. 553-563
    • Frigerio, M.1    Alabadi, D.2    Perez-Gomez, J.3    Garcia-Carcel, L.4    Phillips, A.L.5
  • 67
  • 71
    • 41149134058 scopus 로고    scopus 로고
    • Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants
    • Tao Y, Ferrer JL, Ljung K, Pojer F, Hong F, et al. (2008) Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell 133: 164-176.
    • (2008) Cell , vol.133 , pp. 164-176
    • Tao, Y.1    Ferrer, J.L.2    Ljung, K.3    Pojer, F.4    Hong, F.5
  • 72
    • 70349466371 scopus 로고    scopus 로고
    • The TRANSPORT INHIBITOR RESPONSE2 gene is required for auxin synthesis and diverse aspects of plant development
    • Yamada M, Greenham K, Prigge MJ, Jensen PJ, Estelle M, (2009) The TRANSPORT INHIBITOR RESPONSE2 gene is required for auxin synthesis and diverse aspects of plant development. Plant Physiol 151: 168-179.
    • (2009) Plant Physiol , vol.151 , pp. 168-179
    • Yamada, M.1    Greenham, K.2    Prigge, M.J.3    Jensen, P.J.4    Estelle, M.5
  • 73
    • 0035923536 scopus 로고    scopus 로고
    • The DELLA motif is essential for gibberellin-induced degradation of RGA
    • Dill A, Jung HS, Sun TP, (2001) The DELLA motif is essential for gibberellin-induced degradation of RGA. Proc Natl Acad Sci U S A 98: 14162-14167.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 14162-14167
    • Dill, A.1    Jung, H.S.2    Sun, T.P.3
  • 74
    • 0037434644 scopus 로고    scopus 로고
    • Auxin promotes Arabidopsis root growth by modulating gibberellin response
    • Fu X, Harberd NP, (2003) Auxin promotes Arabidopsis root growth by modulating gibberellin response. Nature 421: 740-743.
    • (2003) Nature , vol.421 , pp. 740-743
    • Fu, X.1    Harberd, N.P.2
  • 76
    • 0347683824 scopus 로고    scopus 로고
    • GIBBERELLIN BIOSYNTHESIS: Enzymes, Genes and Their Regulation
    • Hedden P, Kamiya Y, (1997) GIBBERELLIN BIOSYNTHESIS: Enzymes, Genes and Their Regulation. Annu Rev Plant Physiol Plant Mol Biol 48: 431-460.
    • (1997) Annu Rev Plant Physiol Plant Mol Biol , vol.48 , pp. 431-460
    • Hedden, P.1    Kamiya, Y.2
  • 77
    • 79956021324 scopus 로고    scopus 로고
    • Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis
    • Nozue K, Harmer SL, Maloof JN, (2011) Genomic analysis of circadian clock-, light-, and growth-correlated genes reveals PHYTOCHROME-INTERACTING FACTOR5 as a modulator of auxin signaling in Arabidopsis. Plant Physiol 156: 357-372.
    • (2011) Plant Physiol , vol.156 , pp. 357-372
    • Nozue, K.1    Harmer, S.L.2    Maloof, J.N.3
  • 78
    • 73249135405 scopus 로고    scopus 로고
    • Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings
    • Leivar P, Tepperman JM, Monte E, Calderon RH, Liu TL, et al. (2009) Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings. Plant Cell 21: 3535-3553.
    • (2009) Plant Cell , vol.21 , pp. 3535-3553
    • Leivar, P.1    Tepperman, J.M.2    Monte, E.3    Calderon, R.H.4    Liu, T.L.5
  • 79
    • 70549086801 scopus 로고    scopus 로고
    • Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics
    • Jamet E, Roujol D, San-Clemente H, Irshad M, Soubigou-Taconnat L, et al. (2009) Cell wall biogenesis of Arabidopsis thaliana elongating cells: transcriptomics complements proteomics. BMC Genomics 10: 505.
    • (2009) BMC Genomics , vol.10 , pp. 505
    • Jamet, E.1    Roujol, D.2    San-Clemente, H.3    Irshad, M.4    Soubigou-Taconnat, L.5
  • 80
    • 0141787955 scopus 로고    scopus 로고
    • The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size
    • Hu Y, Xie Q, Chua NH, (2003) The Arabidopsis auxin-inducible gene ARGOS controls lateral organ size. Plant Cell 15: 1951-1961.
    • (2003) Plant Cell , vol.15 , pp. 1951-1961
    • Hu, Y.1    Xie, Q.2    Chua, N.H.3
  • 81
    • 33745081508 scopus 로고    scopus 로고
    • The Arabidopsis ARGOS-LIKE gene regulates cell expansion during organ growth
    • Hu Y, Poh HM, Chua NH, (2006) The Arabidopsis ARGOS-LIKE gene regulates cell expansion during organ growth. Plant J 47: 1-9.
    • (2006) Plant J , vol.47 , pp. 1-9
    • Hu, Y.1    Poh, H.M.2    Chua, N.H.3
  • 82
    • 33751520998 scopus 로고    scopus 로고
    • LONGIFOLIA1 and LONGIFOLIA2, two homologous genes, regulate longitudinal cell elongation in Arabidopsis
    • Lee YK, Kim GT, Kim IJ, Park J, Kwak SS, et al. (2006) LONGIFOLIA1 and LONGIFOLIA2, two homologous genes, regulate longitudinal cell elongation in Arabidopsis. Development 133: 4305-4314.
    • (2006) Development , vol.133 , pp. 4305-4314
    • Lee, Y.K.1    Kim, G.T.2    Kim, I.J.3    Park, J.4    Kwak, S.S.5
  • 83
    • 0037355068 scopus 로고    scopus 로고
    • Expression of an expansin gene is correlated with root elongation in soybean
    • Lee DK, Ahn JH, Song SK, Choi YD, Lee JS, (2003) Expression of an expansin gene is correlated with root elongation in soybean. Plant Physiol 131: 985-997.
    • (2003) Plant Physiol , vol.131 , pp. 985-997
    • Lee, D.K.1    Ahn, J.H.2    Song, S.K.3    Choi, Y.D.4    Lee, J.S.5
  • 86
    • 0029160310 scopus 로고
    • The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana
    • Abel S, Nguyen MD, Theologis A, (1995) The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. J Mol Biol 251: 533-549.
    • (1995) J Mol Biol , vol.251 , pp. 533-549
    • Abel, S.1    Nguyen, M.D.2    Theologis, A.3
  • 88
    • 84859254888 scopus 로고    scopus 로고
    • PIF4-Mediated Activation of YUCCA8 Expression Integrates Temperature into the Auxin Pathway in Regulating Arabidopsis Hypocotyl Growth
    • Sun J, Qi L, Li Y, Chu J, Li C, (2012) PIF4-Mediated Activation of YUCCA8 Expression Integrates Temperature into the Auxin Pathway in Regulating Arabidopsis Hypocotyl Growth. PLoS Genet 8: e1002594.
    • (2012) PLoS Genet , vol.8
    • Sun, J.1    Qi, L.2    Li, Y.3    Chu, J.4    Li, C.5
  • 91
    • 33745204478 scopus 로고    scopus 로고
    • KIDARI, encoding a non-DNA Binding bHLH protein, represses light signal transduction in Arabidopsis thaliana
    • Hyun Y, Lee I, (2006) KIDARI, encoding a non-DNA Binding bHLH protein, represses light signal transduction in Arabidopsis thaliana. Plant Mol Biol 61: 283-296.
    • (2006) Plant Mol Biol , vol.61 , pp. 283-296
    • Hyun, Y.1    Lee, I.2
  • 92
    • 36248952192 scopus 로고    scopus 로고
    • Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins
    • Roig-Villanova I, Bou-Torrent J, Galstyan A, Carretero-Paulet L, Portoles S, et al. (2007) Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins. EMBO J 26: 4756-4767.
    • (2007) EMBO J , vol.26 , pp. 4756-4767
    • Roig-Villanova, I.1    Bou-Torrent, J.2    Galstyan, A.3    Carretero-Paulet, L.4    Portoles, S.5
  • 95
    • 0037243017 scopus 로고    scopus 로고
    • Interactions between plant hormones regulate submergence-induced shoot elongation in the flooding-tolerant dicot Rumex palustris
    • Voesenek LA, Benschop JJ, Bou J, Cox MC, Groeneveld HW, et al. (2003) Interactions between plant hormones regulate submergence-induced shoot elongation in the flooding-tolerant dicot Rumex palustris. Ann Bot 91 Spec No pp. 205-211.
    • (2003) Ann Bot , vol.91 , Issue.SPEC. NO , pp. 205-211
    • Voesenek, L.A.1    Benschop, J.J.2    Bou, J.3    Cox, M.C.4    Groeneveld, H.W.5
  • 96
    • 0031251762 scopus 로고    scopus 로고
    • The massugu1 mutation of Arabidopsis identified with failure of auxin-induced growth curvature of hypocotyl confers auxin insensitivity to hypocotyl and leaf
    • Watahiki MK, Yamamoto KT, (1997) The massugu1 mutation of Arabidopsis identified with failure of auxin-induced growth curvature of hypocotyl confers auxin insensitivity to hypocotyl and leaf. Plant Physiol 115: 419-426.
    • (1997) Plant Physiol , vol.115 , pp. 419-426
    • Watahiki, M.K.1    Yamamoto, K.T.2
  • 98
    • 38849207842 scopus 로고    scopus 로고
    • The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle
    • Rieu I, Ruiz-Rivero O, Fernandez-Garcia N, Griffiths J, Powers SJ, et al. (2008) The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle. Plant J 53: 488-504.
    • (2008) Plant J , vol.53 , pp. 488-504
    • Rieu, I.1    Ruiz-Rivero, O.2    Fernandez-Garcia, N.3    Griffiths, J.4    Powers, S.J.5
  • 99
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.82-80.16.
    • (2004) Genome Biol , vol.5 , pp. 16-82
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 100
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 101
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR, (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 139: 5-17.
    • (2005) Plant Physiol , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 102
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 104
    • 77955132153 scopus 로고    scopus 로고
    • An R Companion to Applied Regression
    • Thousand Oaks, CA, Sage Publications
    • Fox J, Weisberg S, (2011) An R Companion to Applied Regression. Thousand Oaks, CA Sage Publications.
    • (2011)
    • Fox, J.1    Weisberg, S.2
  • 105
    • 40149093631 scopus 로고    scopus 로고
    • The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis
    • Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, et al. (2007) The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb Symp Quant Biol 72: 353-363.
    • (2007) Cold Spring Harb Symp Quant Biol , vol.72 , pp. 353-363
    • Mockler, T.C.1    Michael, T.P.2    Priest, H.D.3    Shen, R.4    Sullivan, C.M.5
  • 106
    • 0038175144 scopus 로고    scopus 로고
    • GoMiner: a resource for biological interpretation of genomic and proteomic data
    • Zeeberg BR, Feng W, Wang G, Wang MD, Fojo AT, et al. (2003) GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol 4: R28.
    • (2003) Genome Biol , vol.4
    • Zeeberg, B.R.1    Feng, W.2    Wang, G.3    Wang, M.D.4    Fojo, A.T.5


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