Development of loop-mediated isothermal amplification assay for specific and rapid detection of camelpox virus in clinical samples

Journal of Virological Methods

Volumn 183, Issue 1, 2012, Pages 34-39

  Venkatesan, G ^a   Bhanuprakash, V ^a   Balamurugan, V ^b   Singh, R K ^c   Pandey, A B ^a  

^a INDIAN VETERINARY RESEARCH INSTITUTE   (India)

^b ICAR NATIONAL INSTITUTE OF VETERINARY EPIDEMIOLOGY AND DISEASE INFORMATICS   (India)

^c NATIONAL RESEARCH CENTRE ON EQUINES   (India)

Author keywords

Camelpox; Diagnosis; Hydroxy naphthol blue; LAMP; SYBR Green I

Indexed keywords

GENOMIC DNA;

AGAR GEL ELECTROPHORESIS; ANKYRIN REPEAT PROTEIN GENE; ARTICLE; BUFFALOPOX VIRUS; CAMELPOX VIRUS; CAPRIPOXVIRUS; COLOR; DNA EXTRACTION; GENE; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; NONHUMAN; ORTHOPOXVIRUS; PLASMID; POXVIRUS; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY; TURBIDITY; ULTRAVIOLET SPECTROSCOPY; VIRUS DETECTION;

ANIMALS; CAMELS; MOLECULAR DIAGNOSTIC TECHNIQUES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; ORTHOPOXVIRUS; PLASMIDS; POXVIRIDAE INFECTIONS; SENSITIVITY AND SPECIFICITY; VETERINARY MEDICINE; VIROLOGY;

CAMELPOX VIRUS; ORF VIRUS;

EID: 84860547266     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2012.03.019     Document Type: Article

References (22)

1. Balamurugan V., Bhanuprakash V., Hosamani M., Jayappa K.D., Venkatesan G., Chauhan B., Singh R.K. A polymerase chain reaction strategy for the diagnosis of camelpox. Journal of Veterinary Diagnostic Investigation 2009, 21:231-237.
2. Bera B.C., Shanmugasundaram K., Barua S., Venkatesan G., Virmani N., Riyesh T., Gulati B.R., Bhanuprakash V., Vaid R.K., Kakker N.K., Malik P., Bansal M., Gadvi S., Singh R.V., Yadav V., Sardarilal Nagarajan G., Balamurugan V., Hosamani M., Pathak K.M., Singh R.K. Zoonotic cases of camelpox infection in India. Veterinary Microbiology 2011, 152:29-38.
3. Bhanuprakash V., Balamurugan V., Hosamani M., Venkatesan G., Chauhan B., Srinivasan V.A., Chauhan R.S., Pathak K.M.L., Singh R.K. Isolation and characterization of Indian isolates of camelpox virus. Tropical Animal Health and Production 2010, 42:1271-1275.
4. Bhanuprakash V., Prabhu M., Venkatesan G., Balamurugan V., Hosamani M., Pathak K.M., Singh R.K. Camelpox: epidemiology, diagnosis and control measures. Expert Review of Anti-Infective Therapy 2010, 8:1187-1201.
5. Bhanuprakash V., Venkatesan G., Balamurugan V., Hosamani M., Yogisharadhya R., Gandhale P., Reddy K.V., Damle A.S., Kher H.N., Chandel B.S., Chauhan H.C., Singh R.K. Zoonotic infections of buffalopox in India. Zoonoses Public Health 2010, 57:e149-e155.
6. Chen H.T., Zhang J., Sun D.H., Chu Y.F., Cai X.P., Liu X.T., Luo X.N., Liu Q., Liu Y.S. Rapid detection of porcine circovirus type 2 by loop-mediated isothermal amplification. Journal of Virological Methods 2008, 149:264-268.
7. Goto M., Honda E., Ogura A., Nomoto A., Hanaki K.I. Colorimetric detection of loopmediated isothermal amplification reaction by using hydroxy naphthol blue. Biotechniques 2009, 46:167-172.
8. Iizuka I., Saijo M., Shiota T., Ami Y., Suzaki Y., Nagata N., Hasegawa H., Sakai K., Fukushi S., Mizutani T., Ogata M., Nakauchi M., Kurane I., Mizuguchi M., Morikawa S. Loop-mediated isothermal amplification-based diagnostic assay for monkeypox virus infections. Journal of Virological Methods 2009, 81:1102-1108.
9. Iwamoto T., Sonobe T., Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. Journal of Clinical Microbiology 2003, 41:2616-2622.
10. Kaneko H., Kawana T., Fukushima E., Suzutani T. Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances. Journal of Biochemical and Biophysical Methods 2007, 70:499-501.
11. Meyer H., Rziha H.J. Characterization of the gene encoding the A-type inclusion protein of camelpox virus and sequence comparison with other orthopoxviruses. Journal of General Virology 1993, 74:1679-1684.
12. Mori T., Nagamine K., Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochemical and Biophysical Research Communication 2001, 289:150-154.
13. Nagamine K., Hase T., Notomi T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Molecular and Cellular Probes 2002, 16:223-229.
14. Nagamine K., Watanabe K., Ohtsuka K., Hase T., Notomi T. Loop-mediated isothermal amplification reaction using a nondenatured template. Clinical Chemistry 2001, 47:1742-1743.
15. Notomi T., Okayama H., Yonekawa T., Watanabe K., Amino N., Hase T. Loopmediated isothermal amplification of DNA. Nucleic Acids Research 2000, 28:E63.
16. Ropp, Jin S.L., Knight Q., Massung J.C., Esposito R.F. Polymerase chain reaction strategy for identification and differentiation of smallpox and other orthopoxviruses. Journal of Clinical Microbiology 1995, 33:2069-2076.
17. Singh R.K., Hosamani M., Balamurugan V., Bhanuprakash V., Rasool T.J., Yadav M.P. Buffalopox: emerging and re-emerging zoonoses. Animal Health Research Reviews 2007, 8:105-114.
18. Singh R.K., Balamurugan V., Hosamani M., Kallesh D.J., Bhanuprakash V. Sequence analysis of C18L gene of buffalopox virus: PCR strategy for specific detection and differentiation of buffalopox from orthopoxviruses. Journal of Virological Methods 2008, 154:146-153.
19. Singh R.K., Balamurugan V., Hosamani M., Satheesh C.C., Rasool T.J., Yadav M.P. Comparative polypeptide profiling: isolation, propagation and purification of Indian isolates of Buffalo poxvirus. Journal of Animal and Veterinary Advances 2006, 5:260-265.
20. Tsai S.M., Chan K.W., Hsu W.L., Chang T.J., Wong M.L., Wang C.Y. Development of a loop-mediated isothermal amplification for rapid detection of orf virus. Journal of Virological Methods 2009, 157:200-204.
21. Van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L. Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses 2000, Academic Press, San Diego.
22. Venkatesan G., Bhanuprakash V., Balamurugan V., Prabhu M., Pandey A.B. TaqMan hydrolysis probe based real time PCR for detection and quantitation of camelpox virus in skin scabs. Journal of Virological Methods 2012, 10.1016/j.jviromet.2012.02.002.