Fungal communities associated with durum wheat production system: A characterization by growth stage, plant organ and preceding crop

Crop Protection

Volumn 37, Issue , 2012, Pages 26-34

  Vujanovic, Vladimir ^a   Mavragani, Delia ^a   Hamel, Chantal ^b  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

^b SWIFT CURRENT RESEARCH AND DEVELOPMENT CENTRE   (Canada)

Author keywords

Control of plant diseases; Crop protection; Crop rotation; EF 1 alpha gene; Fungal antagonists; ITS rDNA

Indexed keywords

ANTAGONISM; CANOLA; CROP PRODUCTION; CROP ROTATION; DISEASE CONTROL; FUNGAL DISEASE; FUNGUS; GENE; PATHOGEN; PERSISTENCE; POLYMERASE CHAIN REACTION; POTENTIAL BIOCONTROL AGENT; PRAIRIE; PRINCIPAL COMPONENT ANALYSIS; SOIL MICROORGANISM; SPECIES DIVERSITY; WHEAT;

CANADA;

ACREMONIUM (ASCOMYCOTA); ALTERNARIA; ARTHRINIUM; ASCOMYCOTA; BASIDIOMYCOTA; BIPOLARIS; BIPOLARIS SOROKINIANA; BRASSICA NAPUS; BRASSICA NAPUS VAR. NAPUS; CHAETOMIUM; CLADOSPORIUM; COCHLIOBOLUS; COCHLIOBOLUS SATIVUS; EPICOCCUM; FUNGI; FUSARIUM; FUSARIUM TORULOSUM; GEOMYCES; KABATIELLA; MICRODOCHIUM; NIGROSPORA; OTUS; PENICILLIUM; PHAEOSPHAERIA; PISUM SATIVUM; PYRENOPHORA; TRICHODERMA; TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM; ZYGOMYCETES; ZYGOMYCOTA;

EID: 84860543022     PISSN: 02612194     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cropro.2012.02.006     Document Type: Article

References (60)

1. Abdellatif M., Fernandez R., Bouzid S., Vujanovic V. Characterization of virulence and PCR-DGGE profiles of Fusarium avenaceum from western Canadian Prairie Ecozone of Saskatchewan. Canadian Journal of Plant Pathology 2010, 32:468-480.
2. Aggarwall R., Tewari A.K., Srivastava K.D., Singh D.V. Role of antibiosis in the biological control of spot blotch (Cochliobolus sativus) of wheat by Chaetomium globosum. Mycopathologia 2004, 157:369-377.
3. Angus J.F., Gardner P.A., Kirkegaard J.A., Desmarchelier J.M. Biofumigation: isothiocyanates released frombrassica roots inhibit growth of the take-all fungus. Plant and Soil 1994, 162:107-112.
4. Arnold A.E. Diversity and ecology of fungal endophytes in tropical forests. Biodiversity of Fungi - Their Role in Human Life 2005, 50-68. Science Publishers, Enfield, NH, USA. S.K. Deshmukh, M.K. Rai (Eds.).
5. Bailey K.L., Gossen B.D., Derksen D.A., Watson P.R. Impact of agronomic practices and environment on diseases of wheat and lentil in southeastern Saskatchewan. Canadian Journal of Plant Pathology 2000, 80:917-927.
6. Bailey K.L., Boyetchko S.M., Längle T. Social and economic drivers shaping the future of biological control: a Canadian perspective on the factors affecting the development and use of microbial biopesticides. Biological Control 2009, 52:221-229.
7. Bailey K.L., Gossen B.D., Lafond G.P., Watson P.R., Derksen D.A. Effect of tillage and crop rotation on root and foliar diseases of wheat and pea in Saskatchewan from 1991 to 1998: univariate and multivariate analysis. Canadian Journal of Plant Science 2001, 81:789-803.
8. Bailey K.L., Motrensen K., Lafond G.P. Effects of tillage systems and crop otations on root and foliar diseases of wheat and pea in Saskatchewan. Canadian Journal of Plant Science 1992, 72:583-591.
9. Ball B.C., Bingham I., Rees R.M., Watson C.A., Litterick A. The role of crop rotations in determining soil structure and crop growth conditions. Canadian Journal of Science 2005, 85:557-577.
10. Bellgard S.E., Williams S.E. Response of mycorrhizal diversity to current climatic changes. Diversity 2011, 3:8-90. 10.3390/d3010008.
11. Benhamou N., Garand C., Goulet A. Ability of nonpathogenic Fusarium oxysporum strain Fo47 to induce resistance against Pythium ultimum infection in cucumber. Applied Environmental Microbiology 2002, 68:4044-4060.
12. Canadian Food Inspection Agency-CFIA The Biology of Triticum turgidum Ssp. Durum (Durum Wheat). Biology Document BIO2006-07 2006.
13. Chan K.Y., Heenan D.P. The influence of crop rotation on soil structure and soil physical properties under conventional tillage. Soil and Tillage Research 1996, 37:113-125.
14. Di Pietro A., Gut-Rella M., Pachlatko J., Schwinn F. Role of antibiotics produced by Chaetomium globosum in biocontrol of Pithium ultimum, a causal agent of damping-off. Phytopathology 1992, 82:131-135.
15. Duckzek L.J., Jones-Flory L.L., Reed S.L., Bailey K.L., Lafond G.P. Sporulation of Bipolaris sorokiniana on the crowns of crop plants grown in Saskatchewan. Canadian Journal of Plant Science 1996, 76:361-367.
16. Einhelling F.A. Integrated view of allelochemicals and multiple stresses. Principles and Practices in Plant Ecology: Allelochemical Interactions 1999, 479-495. CRC Press LLC, Boca Raton, FL. Inderjit, K.M.M. Dakshini, C.L. Foy (Eds.).
17. Fernandez M.R., Jefferson P.G. Fungal population in root and crowns of common and durum wheat in Saskatchewan. Canadian Journal of Plant Pathology 2004, 26:325-334.
18. Fernandez M.R., Pearse P.G., Holzgang G., Huges G. Fusarium head blight in common and durum wheat in Saskatchewan. Canadian Journal of Plant Pathology 2001, 81:83-85.
19. Fisher N.L., Burgess L.W., Toussoun T.A., Nelson P.E. Carnation leaves as a substrate and for preserving cultures of Fusarium species. Phytopathology 1982, 72:151-153.
20. Gale L.R., Harrison S.A., Ward T.J., O'Donnell K., Milus E.A., Gale S.W., Kistler H.C. Nivalenol-type populations of Fusarium graminearum and F. asiaticum are prevalent on wheat in southern Louisiana. Phytopathology 2011, 101:124-134.
21. Garbeva P., Van Veen J.A., Van Elsas J.D. Microbial diversity in soil: microbial population by plant and soil type, and implication for disease suppressiveness. Annual Reviews of Phytopathology 2004, 42:243-270.
22. Gardes M., Bruns T.D. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 1993, 2:113-118.
23. Gnanamanickam S.S., Vasudevan P., Reddy M.S., Defago G., Kloepper J.W. Principles of biological control. Biological Control of Crop Diseases 2002, 1-11. Marcel Dekker Inc. Publisher, NY. S.S. Gnanamanickam (Ed.).
24. Gordon W.L. The occurrence of Fusarium species in Canada. Prevalence and taxonomy of Fusarium species in cereal seed. Canadian Journal of Botany 1952, 30:209-251.
25. Guetsky R., Shtienberg D., Elad Y., Dinoor A. Combining biocontrol agents to reduce the variability of biological control. Phytopathology 2001, 91:621-627.
26. Hamel C., Vujanovic V., Jeannotte R., Nakano-Hylander A., St-Arnaud M. Factors associated with fusarium crown and root rot of asparagus outbreaks. Phytopathology 2005, 95:867-873.
27. Howell C.R. Mechanisms employed by Trichoderma species in the biological control of plant diseases: the history and evolution of current concepts. Plant Disease 2003, 87:4-10.
28. Howell C.R., Stipanovic R.D. Mechanisms in the biocontrol of Rhizoctonia solani-induced cotton seedling disease by Gliocladium virens: antibiosis. Phytopathology 1995, 85:469-472.
29. Kolattukudy P.E., Rogers L.M., Daoxin L., Hwang C.S., Flaishman M.A. Surface signaling in pathogenesis. PNAS USA 1995, 99:4080-4087.
30. Knudsen I.M.B., Hockenhull J., Jensen D.F. Biocontrol of seedling diseases of barley and wheat caused by Fusarium culmorum and Bipolaris sorokiniana: effects of selected fungal antagonists on growth and yield components. Plant Pathology 1995, 44:467-477.
31. Larney F.J., Lindwell C.W. Rotation and tillage effects on available soil water for winter wheat in a semi arid environment. Soil and Tillage Research 1995, 36:111-127.
32. Ledingham R.J. Crop rotations and common root rot in wheat. Canadian Journal of Plant Science 1961, 41:479-486.
33. Lockwood J.L. Exploitation competion. The Fungal Communty: Its Orgaization and Role in Ecosystem 1981, 319-349. Marcel Dekker, New York. D.T. Wicklow, G.C. Carrol (Eds.).
34. Mačkinaite R. Fusarium culmorum (Wm.G.Sm.) Sacc. Interaction with other root-associated fungi of cereals. Biologija 2001, 3:30-33.
35. Mavragani D., Hamel C., Vujanovic V. Species-specific PCR-DGGE markers to distinguish Pyrenophora species associated to cereal seeds. Fungal Biology 2010, 115:169-175. 10.1016/j.funbio.2010.12.00.
36. Mavragani D., Abdellatif L., McConkey B.G., Hamel C., Vujanovic V. First report of damping-off of durum wheat caused by Arthrinium sacchari in the semi-arid Saskatchewan fields. Plant Disease 2007, 91(4):469.
37. McNeil J.N., Cotnoir P.-A., Leroux T., Laprade R., Schwartz J.-L. A Canadian national survey on the public perception of biological control. BioControl 2010, 55:445-454.
38. O'Donnell K., Cigelnik E., Ploetz R. Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. PNAS USA 1998, 95:2044-2049.
39. Pal K.K., McSpadden Gardener B. Biological control of plant pathogens. The Plant Health Instructor 2006, 10.1094/PHI-A-2006-1117-02.
40. Paulitz T.C., Bélanger R.R. Biological control in greenhouse systems. Annual Reviews of Phytopathology 2001, 39:103-133.
41. Pliego C., Ramos C., de Vicente A., Cazorla F.M. Screening for candidate bacterial biocontrol agents against soilborne fungal plant pathogens. Plant and Soil 2010, 340:505-520.
42. Roberti R., Zakrisson E., Flamigni F., De Vero L., Cesari A. Antagonistic fungi producing hydrolytic enzymes, active in degrading the cell wall of some foot rot pathogens (Fusarium spp.) of wheat. Journal of Plant Diseases and Protection 2002, 109:101-108.
43. Roberts D.P., Lohrke S.M., Meyer S.L.F., Buyer J.S., Bowers J.H., Jacyn Baker C., Li W., de Souza J.T., Lewis J.A., Chung S. Biocontrol agents applied individually and in combination for suppression of soilborne diseases of cucumber. Crop Protection 2005, 24:141-155.
44. Roper M.M., Gupta V.V.S.R. Management practices and soil biota. Australian Journal of Soil Research 1995, 33:321-339.
45. Saldajeno M.G.B., Hyakumachi M. The plant growth-promoting fungus Fusarium equiseti and the arbuscular mycorrhizal fungus Glomus mosseae stimulate plant growth and reduce severity of anthracnose and damping-off diseases in cucumber (Cucumis sativus) seedlings. Annals of Applied Biology 2011, 159:28-40.
46. Schäfer W. Molecular mechanisms of fungal pathogenicity to plants. Annual Reviews of Phytopathology 1994, 32:461-477.
47. Stevens R.B. Mycology Guidebook 1981, Mycological Society of America. University of Washington Press, Seattle, 712 pp.
48. Sturz A.V., Bernier C.C. Influence of crop rotations on winter wheat growth and yield in relation to the dynamics of pathogenic crown and root fungal complexes. Canadian Journal of Plant Pathology 1989, 11:114-121.
49. Viterbo A., Inbar J., Hadar Y., Chet I. Plant disease biocontrol and induced resistance via fungal mycoparasites. Environmental and Microbial Relationships 2007, The Mycota IV, 127-146. second ed. C.P. Kubicek, L.S. Druzhinina (Eds.).
50. Vujanovic V., Goh Y.K. Sphaerodes mycoparasitica biotrophic mycoparasite of 3-acetyldeoxynivalenol- and 15-acetyldeoxynivalenol-producing toxigenic Fusarium graminearum chemotypes. FEMS Microbiology Letters 2011, 316:136-143.
51. Vujanovic V., Hamel C., Yergeau E., St-Arnaud M. Biodiversity and biogeography of Fusarium species from north eastern North American asparagus fields based on microbiological and molecular approaches. Microbial Ecology 2006, 51:242-255.
52. Vujanovic V., Hamelin R.C., Vujanovic G., St-Arnaud M. Fungal diversity, dominance, and community structure in the rhizosphere of clonal Picea marina plants through nursery production chronosequences. Microbial Ecology 2007, 54:672-684.
53. Wei D.L., Chang S.C., Lin S.C., Doong M.L., Jong D.C. Production of 3-nitropropionic acid by Arthrinium species. Current Microbiology 1994, 28:1-5.
54. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, 315-322. Academic Press Inc., London. M.A. Innis, D.H. Gelfand, J.J. Shinsky, T.J. White (Eds.).
55. Wicklow D.T., Roth S., Deyrup S.T., Gloer J.B. A protective endophyte of maize: Acremonium zeae antibiotics inhibitory to Aspergillus flavus and Fusarium verticillioides. Mycological Research 2005, 109:610-618.
56. Wiese M.V. Compendium of Wheat Diseases 1987, The American Phytopathological Society, St. Paul, MN. second ed.
57. Xingjie L., Xueyun L., Wenjuanm H. Sugarcane poisoning in China. Biomedical and Environmental Sciences 1992, 5:161-177.
58. Yamaji K., Fukushi Y., Hashidoko Y., Yoshida T., Tahara T. Characterization of antifungal metabolites produced by Penicillium species isolated from seeds of Picea glehnii. Journal of Chemical Ecology 1999, 25:1643-1653.
59. Zadoks J.C., Chang T.T., Konzak C.F. A decimal code for the growth stages of cereals. Weed Research 1974, 14:415-421.
60. Zillinsky F.J. Fusarium diseases. Common Diseases in Small Grain Cereals: a Guide to Identification 1983, 59-69. CYMMYT, Mexico, DF.