Modeling the role of water in Bacillus subtilis colonies

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 85, Issue 4, 2012, Pages

  Mezanges, X ^a   Regeard, C ^b   Gerin, C ^a   Deroulers, C ^a   Grammaticos, B ^a   Badoual, M ^a  

^a Centre National de la Recherche Scientifique   (France)

^b UNIVERSITÉ PARIS SACLAY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLUS SUBTILIS; CELLULAR AUTOMATON MODELS; ROLE OF WATER; SUBTILIS; WATER POOLS;

CELLULAR AUTOMATA; LAKES; WATER LEVELS;

BACTERIA;

EID: 84860475421     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.85.041913     Document Type: Article

References (49)

1. L. Hall-Stoodley, J. Costerton, and P. Stoodley, Nat. Rev. Microbiol. 1740-1526 10.1038/nrmicro821 2, 95 (2004). (Pubitemid 39490064)
2. M. F. Copeland and D. B. Weibel, Soft Matter 1744-683X 10.1039/b812146j 5, 1174 (2009).
3. D. B. Kearns and R. Losick, Mol. Microbiol. MOMIEE 0950-382X 10.1046/j.1365-2958.2003.03584.x 49, 581 (2003). (Pubitemid 36918682)
4. R. M. Harshey, Annu. Rev. Microbiol. ARMIAZ 0066-4227 10.1146/annurev.micro.57.030502.091014 57, 249 (2003). (Pubitemid 37392943)
5. J. Henrichsen, Bacteriol. Rev. 36, 478 (1972).
6. B. V. Jones, R. Young, E. Mahenthiralingam, and D. J. Stickler, Infect. Immun. 0019-9567 10.1128/IAI.72.7.3941-3950.2004 72, 3941 (2005).
7. M. Banahaa, A. Daerr, and L. Limat, Eur. Phys. J. Special Topics 1951-6355 10.1140/epjst/e2009-00904-1 166, 185 (2009).
8. Q. Wang, A. Suzuki, S. Mariconda, S. Porwollik, and R. M. Harshey, EMBO J. EMJODG 0261-4189 10.1038/sj.emboj.7600668 24, 2034 (2005). (Pubitemid 40896174)
9. S. Mariconda, Q. Wang, and R. M. Harshey, Mol. Microbiol. MOMIEE 0950-382X 10.1111/j.1365-2958.2006.05208.x 60, 1590 (2006). (Pubitemid 43801444)
10. K. Hamze, S. Autret, S. Laalami, D. Julkowska, R. Briandet, M. Renault, C. Absalon, B. Holland, H. Putzer, and S. J. Séror, Microbiol. MROBEO 1350-0872 10.1099/mic.0.047159-0 157, 2456 (2011).
11. D. Julkowska, M. Obuchowski, I. B. Holland, and S. J. Seror, Microbiology MROBEO 1350-0872 10.1099/mic.0.27061-0 150, 1839 (2004).
12. D. Julkowska, M. Obuchowski, I. B. Holland, and S. J. Séror, J. Bacteriol. JOBAAY 0021-9193 10.1128/JB.187.1.65-76.2005 187, 65 (2005). (Pubitemid 40024181)
13. B. G. Chen, L. Turner, and H. C. Berg, J. Bacteriol. JOBAAY 0021-9193 10.1128/JB.01109-07 189, 8750 (2007). (Pubitemid 350210048)
14. I. Ráfols, Ph.D. thesis, Chuo University, Japan, 1998.
15. H. Fujikawa, Physica A PHYADX 0378-4371 10.1016/0378-4371(92)90123-8 189, 15 (1992).
16. M. Ohgiwari, M. Matsushita, and T. Matsuyama, J. Phys. Soc. Jpn. JUPSAU 0031-9015 10.1143/JPSJ.61.816 61, 816 (1992).
17. J. I. Wakita, K. Komatsu, A. Nakahara, T. Matsuyama, and M. Matsushita, J. Phys. Soc. Jpn. JUPSAU 0031-9015 10.1143/JPSJ.63.1205 63, 1205 (1994).
18. J. I. Wakita, H. Shimada, H. Itoh, T. Matsuyama, and M. Matsushita, J. Phys. Soc. Jpn. JUPSAU 0031-9015 10.1143/JPSJ.70.911 70, 911 (2001).
19. Y. Yamazaki, T. Ikeda, H. Shimada, F. Hiramatsu, N. Kobayashi, J. I. Wakita, H. Itoh, S. Kurosu, M. Nakatsuchi, T. Matsuyama, and M. Matsushita, Physica D PDNPDT 0167-2789 10.1016/j.physd.2004.12.013 205, 136 (2005). (Pubitemid 40753182)
20. A. M. Lacasta, I. R. Cantalapiedra, C. E. Auguet, A. Penaranda, and L. Ramirez-Piscina, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.59.7036 59, 7036 (1999).
21. M. Matsushita, J. Wakita, H. Itoh, I. Ràfols, T. Matsuyama, H. Sakaguchi, and M. Mimura, Physica A PHYADX 0378-4371 10.1016/S0378-4371(97) 00511-6 249, 517 (1998).
22. M. Mimura, H. Sakaguchi, and M. Matsushita, Physica A PHYADX 0378-4371 10.1016/S0378-4371(00)00085-6 282, 283 (2000).
23. B. Grammaticos and M. Badoual, Physica D PDNPDT 0167-2789 10.1016/j.physd.2007.07.002 234, 90 (2007). (Pubitemid 47374837)
24. M. Badoual, P. Derbez, M. Aubert, and B. Grammaticos, Physica A PHYADX 0378-4371 10.1016/j.physa.2008.10.046 388, 549 (2009).
25. A. Nishiyama, T. Tokihiro, M. Badoual, and B. Grammaticos, Physica D PDNPDT 0167-2789 10.1016/j.physd.2010.04.003 239, 1573 (2010).
26. T. Matsuyama, Y. Takagi, Y. Nakagawa, H. Itoh, J. Wakita, and M. Matsushita, J. Bacteriol. JOBAAY 0021-9193 10.1128/JB.182.2.385-393.2000 182, 385 (2000). (Pubitemid 30030122)
27. H. Shimada, T. Ikeda, J. I. Wakita, H. Itoh, S. Kurosu, F. Hiramatsu, M. Nakatsuchi, Y. Yamazaki, T. Matsuyama, and M. Matsushita, J. Phys. Soc. Jpn. JUPSAU 0031-9015 10.1143/JPSJ.73.1082 73, 1082 (2004). (Pubitemid 40775435)
28. B. P. Ayati, J. Math. Biol. JMBLAJ 0303-6812 10.1007/s00285-005-0345-3 52, 93 (2006). (Pubitemid 41830877)
29. A. Czirók, M. Matsushita, and T. Vicsek, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.63.031915 63, 031915 (2001).
30. S. E. Esipov and J. A. Shapiro, J. Math. Biol. JMBLAJ 0303-6812 10.1007/s002850050100 36, 249 (1998).
31. K. Kawasaki, A. Mochizuki, M. Matsushita, T. Umeda, and N. Shigesada, J. Theor. Biol. JTBIAP 0022-5193 10.1006/jtbi.1997.0462 188, 177 (1997). (Pubitemid 27464187)
32. Y. Kozlovsky, I. Cohen, I. Golding, and E. Ben-Jacob, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.59.7025 59, 7025 (1999).
33. J. Lega and T. Passot, Phys. Rev. E PLEEE8 1539-3755 10.1103/PhysRevE.67. 031906 67, 031906 (2003).
34. E. Ben-Jacob, I. Cohen, and H. Levine, Adv. Phys. ADPHAH 0001-8732 10.1080/000187300405228 49, 395 (2000). (Pubitemid 35381839)
35. H. Levine and E. Ben-Jacob, Phys. Biol. 1478-3967 10.1088/1478-3967/1/2/ P01 1, 14 (2004). (Pubitemid 44362299)
36. E. Ben-Jacob, O. Schochet, A. Tenenbaum, I. Cohen, A. Czirok, and T. Vicsek, Nature (London) NATUAS 0028-0836 10.1038/368046a0 368, 46 (1994).
37. G. Voronoi, J. Reine Angew. Math. 134, 198 (1908).
38. B. A. Rader, S. R. Campagna, M. F. Semmelhack, B. L. Bassler, and K. Guillemin, J. Bacteriol. JOBAAY 0021-9193 10.1128/JB.00246-07 189, 6109 (2007). (Pubitemid 47378617)
39. V. Leclère, R. Marti, M. Béchet, P. Fickers, and P. Jacques, Arch. Microbiol. 0302-8933 10.1007/s00203-006-0163-z 186, 475 (2006). (Pubitemid 44819326)
40. J. M. Solomon, R. Magnuson, A. Srivastava, and A. D. Grossman, Genes Dev. GEDEEP 0890-9369 10.1101/gad.9.5.547 9, 547 (1995).
41. R. Daniels, J. Vanderleyden, and J. Michiels, FEMS Microbiol. Rev. FMREE4 0168-6445 10.1016/j.femsre.2003.09.004 28, 261 (2004). (Pubitemid 38721406)
42. Y. Wu, B. G. Hosu, and H. C. Berg, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.1016693108 108, 4147 (2011).
43. A. Marrocco, H. Henry, B. Holland, M. Plapp, S. J. Séror, and B. Perthame, Math. Model. Nat. Phenom. 0973-5348 10.1051/mmnp/20105107 5, 148 (2010).
44. N. H. Mendelson, A. Bourque, K. Wilkening, K. R. Anderson, and J. C. Watkins, J. Bacteriol. 181, 600 (1999).
45. A. Sokolov, I. S. Aranson, J. O. Kessler, and R. E. Goldstein, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.98.158102 98, 158102 (2007). (Pubitemid 46574468)
46. E. Lauga and T. R. Powers, Rep. Prog. Phys. RPPHAG 0034-4885 10.1088/0034-4885/72/9/096601 72, 096601 (2009).
47. H. P. Zhang, A. Be'er, E.-L. Florin, and H. L. Swinney, Proc. Natl. Acad. Sci. USA PNASA6 0027-8424 10.1073/pnas.1001651107 107, 13626 (2010).
48. A. Be'er and R. M. Harshey, Biophys. J. BIOJAU 0006-3495 10.1016/j.bpj.2011.07.019 101, 1017 (2011).
49. N. A. Hay, D. J. Tipper, D. Gygi, and C. Hughes, J. Bacteriol. 181, 2008 (1999).