메뉴 건너뛰기




Volumn 34, Issue 6, 2012, Pages 454-469

Improvement of plankton biovolume estimates derived from image-based automatic sampling devices: Application to FlowCAM

Author keywords

biomass; biovolume; FlowCAM; machine learning; size spectra; Support Vector Machine (SVM)

Indexed keywords

AUTOMATION; BIOMASS; CLASSIFICATION; DIATOM; ESTIMATION METHOD; IMAGE; MICROALGA; MORPHOLOGY; PHYTOPLANKTON; SAMPLING;

EID: 84860452440     PISSN: 01427873     EISSN: 14643774     Source Type: Journal    
DOI: 10.1093/plankt/fbs017     Document Type: Article
Times cited : (56)

References (39)
  • 1
    • 0141561552 scopus 로고    scopus 로고
    • Estimating zooplankton biomass through image analysis
    • DOI 10.1007/s00227-003-1094-8
    • Alcaraz, M. (2003) Estimating zooplankton biomass through image analysis. Mar. Biol., 143, 307-315. A ́ (Pubitemid 37110676)
    • (2003) Marine Biology , vol.143 , Issue.2 , pp. 307-315
    • Alcaraz, M.1    Saiz, E.2    Calbet, A.3    Trepat, I.4    Broglio, E.5
  • 2
    • 79959308185 scopus 로고    scopus 로고
    • How to effectively sample the plankton size spectrum? A case study using FlowCAM
    • lvarez, E., López-Urrutia, A., Nogueira, E. et al. (2011) How to effectively sample the plankton size spectrum? A case study using FlowCAM. J. Plankton Res., 33, 1119-1133.
    • (2011) J. Plankton Res. , vol.33 , pp. 1119-1133
    • Lvarez, E.1    López-Urrutia, A.2    Nogueira, E.3
  • 3
    • 0345459521 scopus 로고
    • Interpretation of particle spectra of electronic counters by microscopical methods
    • Bakker, C., Prins, T. C. and Tackx, M. L. M. (1985) Interpretation of particle spectra of electronic counters by microscopical methods. Hydrobiol. Bull., 19, 49-59.
    • (1985) Hydrobiol. Bull. , vol.19 , pp. 49-59
    • Bakker, C.1    Prins, T.C.2    Tackx, M.L.M.3
  • 4
    • 76649090267 scopus 로고    scopus 로고
    • Growth phase of the diatom Skeletonema marinoi influences the metabolic profile of the cells and the selective feeding of the copepod Calanus spp
    • Barofsky, A., Simonelli, P., Vidoudez, C. et al. (2010) Growth phase of the diatom Skeletonema marinoi influences the metabolic profile of the cells and the selective feeding of the copepod Calanus spp. J. Plankton Res., 32, 263-272.
    • (2010) J. Plankton Res. , vol.32 , pp. 263-272
    • Barofsky, A.1    Simonelli, P.2    Vidoudez, C.3
  • 5
    • 84860126449 scopus 로고    scopus 로고
    • RAPID: Researchon automated plankton identification
    • Benfield, M. C., Grosjean, P., Culverhouse, P. et al. (2007) RAPID: researchon automated plankton identification. Oceanography, 20, 12-26.
    • (2007) Oceanography , vol.20 , pp. 12-26
    • Benfield, M.C.1    Grosjean, P.2    Culverhouse, P.3
  • 7
    • 43249085239 scopus 로고    scopus 로고
    • Species richness and cell-size distribution: Size structure of phytoplankton communities
    • DOI 10.3354/meps07293
    • Cermeño, P. and Figueiras, F. G. (2008) Species richness and cell-size distribution: size structure of phytoplankton communities. Mar. Ecol. Prog. Ser., 357, 79-85. (Pubitemid 351655943)
    • (2008) Marine Ecology Progress Series , vol.357 , pp. 79-85
    • Cermeno, P.1    Figueiras, F.G.2
  • 9
    • 12344329734 scopus 로고    scopus 로고
    • Real-time observation of taxa-specific plankton distributions: An optical sampling method
    • Davis, C. S., Hu, Q., Gallager, S. M. et al. (2004) Real-time observation of taxa-specific plankton distributions: an optical sampling method. Mar. Ecol. Prog. Ser., 284, 77-96. (Pubitemid 40118207)
    • (2004) Marine Ecology Progress Series , vol.284 , pp. 77-96
    • Davis, C.S.1    Hu, Q.2    Gallager, S.M.3    Tang, X.4    Ashjian, C.J.5
  • 10
    • 0000978470 scopus 로고
    • In Sournia, A.Phytoplankton Manual. UNESCO, Paris
    • Dodson, A. N. and Thomas, W. H. (1978) Reverse filtration. In Sournia, A. (ed.), Phytoplankton Manual. UNESCO, Paris, pp. 104-107.
    • (1978) Reverse Filtration. , pp. 104-107
    • Dodson, A.N.1    Thomas, W.H.2
  • 11
    • 84870481432 scopus 로고    scopus 로고
    • Predicción taxono ́mica de muestras de microplancton usando técnicas de Aprendizaje Automático.
    • Actas del V Simposio de Teorá y Aplicaciones de Minerá de Datos (TAMIDA 2010). Ibergaceta Publicaciones, Madrid
    • González, P., D?́ez, J., Del Coz, J. J. et al. (2010) Predicción taxono ́mica de muestras de microplancton usando técnicas de Aprendizaje Automático. In Troncoso, A. and Riquelme, J. C. (eds), Actas del V Simposio de Teorá y Aplicaciones de Minerá de Datos (TAMIDA 2010). Ibergaceta Publicaciones, Madrid, pp. 319-328.
    • (2010) Troncoso, A. and Riquelme, J. C. , pp. 319-328
    • González, P.1    D́ez, J.2    Del Coz, J.J.3
  • 12
    • 76649089950 scopus 로고    scopus 로고
    • Digital zooplankton image analysis using the ZooScan integrated system
    • Gorsky, G., Ohman, M. D., Picheral, M. et al. (2010) Digital zooplankton image analysis using the ZooScan integrated system. J. Plankton Res., 32, 285-303.
    • (2010) J. Plankton Res. , vol.32 , pp. 285-303
    • Gorsky, G.1    Ohman, M.D.2    Picheral, M.3
  • 14
    • 3042783402 scopus 로고    scopus 로고
    • Enumeration, measurement, and identification of net zooplankton samples using the ZOOSCAN digital imaging system
    • DOI 10.1016/j.icesjms.2004.03.012, PII S1054313904000402
    • Grosjean, P., Picheral, M., Warembourg, C. et al. (2004) Enumeration, measurement and identification of net zooplankton samples using the ZOOSCAN digital imaging system. ICES J. Mar. Sci., 61, 518-525. (Pubitemid 38851909)
    • (2004) ICES Journal of Marine Science , vol.61 , Issue.4 , pp. 518-525
    • Grosjean, P.1    Picheral, M.2    Warembourg, C.3    Gorsky, G.4
  • 16
    • 0344655660 scopus 로고    scopus 로고
    • Biovolume calculation for pelagic and benthic microalgae
    • Hillebrand, H., Dürselen, C.-D., Kirschtel, D. et al. (1999) Biovolume calculation for pelagic and benthic microalgae. J. Phycol., 35, 403-4424.
    • (1999) J. Phycol. , vol.35 , pp. 403-4424
    • Hillebrand, H.1    Dürselen, C.-D.2    Kirschtel, D.3
  • 17
    • 84937655864 scopus 로고
    • Visual pattern recognition by moment invariants
    • Hu, M. K. (1962) Visual pattern recognition by moment invariants. IRE Trans. Info. Theory, 8, 179-187.
    • (1962) IRE Trans. Info. Theory , vol.8 , pp. 179-187
    • Hu, M.K.1
  • 18
    • 57749190980 scopus 로고    scopus 로고
    • Spring zooplankton distribution in the Bay of Biscay from 1998 to 2006 in relation with anchovy recruitment
    • Irigoien, X., Fernandes, J. A., Grosjean, P. et al. (2009) Spring zooplankton distribution in the Bay of Biscay from 1998 to 2006 in relation with anchovy recruitment. J. Plankton Res., 31, 1-17.
    • (2009) J. Plankton Res. , vol.31 , pp. 1-17
    • Irigoien, X.1    Fernandes, J.A.2    Grosjean, P.3
  • 19
    • 84860463699 scopus 로고    scopus 로고
    • FlowCAM: Sizing cells and understanding the impact of size distributions on biovolume of planktonic community structure
    • Jakobsen, H. H. and Carstensen, J. (2011) FlowCAM: sizing cells and understanding the impact of size distributions on biovolume of planktonic community structure. Aquat. Microb. Ecol., 65, 75-87.
    • (2011) Aquat. Microb. Ecol. , vol.65 , pp. 75-87
    • Jakobsen, H.H.1    Carstensen, J.2
  • 21
    • 3442875566 scopus 로고    scopus 로고
    • Recognizing plankton images from the shadow image particle profiling evaluation recorder
    • Luo, T., Kramer, K., Goldgof, D. B. et al. (2004) Recognizing plankton images from the shadow image particle profiling evaluation recorder. IEEE Trans. Syst. Man Cyber. B, 34, 1753-1762.
    • (2004) IEEE Trans. Syst. Man Cyber. B , vol.34 , pp. 1753-1762
    • Luo, T.1    Kramer, K.2    Goldgof, D.B.3
  • 22
    • 0034099155 scopus 로고    scopus 로고
    • Carbon to volume relationships for dinoflagellates, diatoms, and other protist plankton
    • Menden-Deuer, S., Lessard, E. J. and Satterberg, J. (2000) Carbon to volume relationships for dinoflagellates, diatoms and other protest plankton. Limnol. Oceanogr., 45, 569-579. (Pubitemid 30247467)
    • (2000) Limnology and Oceanography , vol.45 , Issue.3 , pp. 569-579
    • Menden-Deuer, S.1    Lessard, E.J.2
  • 23
    • 77951959633 scopus 로고    scopus 로고
    • EBImage-an R package for image processing with applications to cellular phenotypes
    • Pau, G., Fuchs, F., Sklyar, O. et al. (2010) EBImage-an R package for image processing with applications to cellular phenotypes. Bioinformatics, 26, 979-981.
    • (2010) Bioinformatics , vol.26 , pp. 979-981
    • Pau, G.1    Fuchs, F.2    Sklyar, O.3
  • 25
    • 9944247094 scopus 로고    scopus 로고
    • Patterns of biomass-size spectra from oligotrophic waters of the Northwest Atlantic
    • Quiñones, R. A., Platt, T. and Rodr?́guez, J. (2003) Patterns of biomass-size spectra from oligotrophic waters of the Northwest Atlantic. Prog. Oceanogr., 57, 405-427.
    • (2003) Prog. Oceanogr. , vol.57 , pp. 405-427
    • Quiñones, R.A.1    Platt, T.2    Rodŕguez, J.3
  • 26
    • 0022823342 scopus 로고
    • Relation between biomass and body weight of plankton in a steady state oceanic ecosystem
    • Rodriguez, J. and Mullin, M. M. (1986) Relation between biomass and body weight of plankton in a steady state oceanic ecosystem. Limnol. Oceanogr., 31, 361-370.
    • (1986) Limnol. Oceanogr. , vol.31 , pp. 361-370
    • Rodriguez, J.1    Mullin, M.M.2
  • 28
    • 0003493927 scopus 로고
    • A practical manual on the use of the coulter counter in marine science
    • Sheldon, R. W. and Parsons, T. R. (1967) A Practical Manual on the Use of the Coulter Counter in Marine Science. Coulter Electronics, Toronto, pp. 66.
    • (1967) Coulter Electronics, Toronto , pp. 66
    • Sheldon, R.W.1    Parsons, T.R.2
  • 30
    • 0032500166 scopus 로고    scopus 로고
    • An imaging-in-flow system for automated analysis of marine microplankton
    • Sieracki, C. K., Sieracki, M. E. and Yentsch, C. S. (1998) An imaging-in-flow system for automated analysis of marine microplankton. Mar. Ecol. Prog. Ser., 168, 285-296. (Pubitemid 28358605)
    • (1998) Marine Ecology Progress Series , vol.168 , pp. 285-296
    • Sieracki, C.K.1    Sieracki, M.E.2    Yentsch, C.S.3
  • 31
    • 35348833359 scopus 로고    scopus 로고
    • Image analysis for microscopy screens-image analysis and processing with EBImage
    • Sklyar, O. and Huber, W. (2006) Image analysis for microscopy screens-image analysis and processing with EBImage. The Newsletter of the R Project, 6, 12-16.
    • (2006) The Newsletter of the R Project , vol.6 , pp. 12-16
    • Sklyar, O.1    Huber, W.2
  • 32
    • 0035816160 scopus 로고    scopus 로고
    • Estimating the taxonomic composition of a sample when individuals are classified with error
    • Solow, A., Davis, C. and Hu, Q. (2001) Estimating the taxonomic composition of a sample when individuals are classified with error. Mar. Ecol. Prog. Ser., 216, 309-311. (Pubitemid 32731504)
    • (2001) Marine Ecology Progress Series , vol.216 , pp. 309-311
    • Solow, A.1    Davis, C.2    Hu, Q.3
  • 33
    • 44649101375 scopus 로고    scopus 로고
    • Automated taxonomic classification of phytoplankton sampled with imaging-in-flow cytometry
    • Sosik, H. M. and Olson, R. J. (2007) Automated taxonomic classification of phytoplankton sampled with imaging-in-flow cytometry. Limnol. Oceanogr. Meth, 5, 204-216. (Pubitemid 351773988)
    • (2007) Limnology and Oceanography: Methods , vol.5 , Issue.JUN , pp. 204-216
    • Sosik, H.M.1    Olson, R.J.2
  • 36
    • 0000954448 scopus 로고
    • Zur Vervollkommnung der quantitative Phytoplankton-Methodik
    • Utermöhl, H. (1958) Zur Vervollkommnung der quantitative Phytoplankton-Methodik. Mitt. Int. Ver. Theor. Angew. Limnol., 9, 1-38.
    • (1958) Mitt. Int. Ver. Theor. Angew. Limnol. , vol.9 , pp. 1-38
    • Utermöhl, H.1
  • 37
    • 58549102915 scopus 로고    scopus 로고
    • Changes in plankton size structure and composition, during the generation of a phytoplankton bloom, in the central Cantabrian Sea
    • Zarauz, L., Irigoien, X. and Fernandes, J. A. (2009) Changes in plankton size structure and composition, during the generation of a phytoplankton bloom, in the central Cantabrian Sea. J. Plankton Res., 31, 193-207.
    • (2009) J. Plankton Res. , vol.31 , pp. 193-207
    • Zarauz, L.1    Irigoien, X.2    Fernandes, J.A.3
  • 38
    • 35348922791 scopus 로고    scopus 로고
    • Mapping plankton distribution in the Bay of Biscay during three consecutive spring surveys
    • DOI 10.3354/meps06970
    • Zarauz, L., Irigoien, X., Urtizberea, A. et al. (2007) Mapping plankton distribution in the Bay of Biscay during three consecutive spring surveys. Mar. Ecol. Prog. Ser., 345, 27-39. (Pubitemid 47582844)
    • (2007) Marine Ecology Progress Series , vol.345 , pp. 27-39
    • Zarauz, L.1    Irigoien, X.2    Urtizberea, A.3    Gonzalez, M.4
  • 39
    • 33747113980 scopus 로고
    • Beugungstheorie des Schneidenverfahrens und seiner verbesserten Form, der Phasenkontrastmethode (Diffraction theory of the cut procedure and its improved form, the phase contrast method)
    • Zernike, F. (1934) Beugungstheorie des Schneidenverfahrens und seiner verbesserten Form, der Phasenkontrastmethode (Diffraction theory of the cut procedure and its improved form, the phase contrast method). Physica, 1, 689-704.
    • (1934) Physica , vol.1 , pp. 689-704
    • Zernike, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.