Deciphering the ontogeny of a sympodial tree

Trees - Structure and Function

Volumn 26, Issue 3, 2012, Pages 865-879

  Costes, Evelyne ^a   Guédon, Yann ^a  

^a UMR AGAP   (France)

Author keywords

Floral differentiation; Growth phase; Hidden Markov model; Tree architecture; Variable order Markov chain

Indexed keywords

ADOLESCENT PHASE; APPLE TREES; GROWTH PHASE; GROWTH PHASIS; GROWTH UNITS; MORPHOLOGICAL CHARACTERISTIC; PREFERENTIAL PATHWAYS; PRESENCE/ABSENCE; REPEATED PATTERNS;

FRUITS; HIDDEN MARKOV MODELS;

FORESTRY;

FORESTRY; FRUITS; GROWTH; MATHEMATICAL MODELS;

MALUS X DOMESTICA;

EID: 84860439465     PISSN: 09311890     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00468-011-0661-8     Document Type: Article

References (36)

1. Bangerth KF (2009) Floral induction in mature, perennial angiosperm fruit trees: Similarities and discrepancies with annual/biennial plants and the involvement of plant hormones. Sci Hortic 122: 153-163.
2. Barnola P, Alatou D, Lacointe A, Lavarenne S (1990) Biological and biochemical study of factors determining rhythmic growth of oak (Quercus robur). Effects of leaf removal. Ann Sci Forest 47: 619-631.
3. Barthélémy D, Caraglio Y (2007) Plant architecture: a dynamic, multilevel and comprehensive approach to plant form, structure and ontogeny. Ann Bot 99: 375-407.
4. Berman ME, DeJong TM (1997) Crop load and water stress effects on daily stem growth in peach (Prunus persica). Tree Physiol 17: 467-472.
5. Bühlmann P, Wyner AJ (1999) Variable length Markov chains. Ann Stat 27: 480-513.
6. Bustan A, Goldschmidt EE (1998) Estimating the cost of flowering in a grapefruit tree. Plant Cell Environ 21: 217-224.
7. Cannell MGR (1985) Dry matter partitioning in tree crops. In: Cannell MGR, Jackson JE (eds) Attributes of trees as crop plants. Institute of Terrestrial Ecology, UK, pp 160-193.
8. Chaubert-Pereira F, Caraglio Y, Lavergne C, Guédon Y (2009) Identifying ontogenetic, environmental and individual components of forest tree growth. Ann Bot 104: 883-896.
9. Costes E, Sinoquet H, Kelner JJ, Godin C (2003) Exploring within-tree architectural development of two apple tree cultivars over 6 years. Ann Bot 91: 91-104.
10. Costes E, Smith C, Renton M, Guédon Y, Prusinkiewivz P, Godin C (2008) Mapple T: simulation of apple tree development using mixed statistical and biomechanical models. Funct Plant Biol 35: 936-950.
11. Crabbé J, Escobedo-Alvarez JA (1991) Activités méristématiques et cadre temporel assurant la transformation florale des bourgeons chez le Pommier (Malus x Domestica Borkh., cv. Golden Delicious). In: L'Arbre: Biologie et developpement. Naturalia Monspeliensia, pp 369-379.
12. Csiszár I, Talata Z (2006) Context tree estimation for not necessarily finite memory processes, via BIC and MDL. IEEE Trans Inf Theory 52: 1007-1016.
13. Day JS, Gould KS, Jameson PE (1997) Vegetative architecture of Eleocarpus hookerianus. Transition from juvenile to adult. Ann Bot 79: 617-624.
14. Durand JB, Guédon Y, Caraglio Y, Costes E (2005) Analysis of the plant architecture via tree-structured statistical models: the hidden Markov trees. New Phytol 166: 813-825.
15. Ephraim Y, Merhav N (2002) Hidden Markov processes. IEEE Trans Inf Theory 48: 1518-1569.
16. Grenander U, Miller MI (2006) Pattern Theory, from representation to inference. Oxford University Press, Oxford.
17. Guédon Y, Barthélémy D, Caraglio Y, Costes E (2001) Pattern analysis in branching and axillary flowering sequences. J Theor Biol 212: 481-520.
18. Guédon Y, Caraglio Y, Heuret P, Lebarbier E, Meredieu C (2007) Analyzing growth components in trees. J Theor Biol 248: 418-447.
19. Hackett WP (1985) Juvenility, maturation and rejuvenation in woody plants. In: Janick J (ed) Horticultural Reviews 7. pp 109-115.
20. Hallé F, Oldeman RA, Tomlinson PB (1978) Tropical trees and forests. Springer, Berlin.
21. Kass RE, Raftery AE (1995) Bayes factors. J Am Stat Assoc 90: 773-795.
22. Lauri PÉ (2002) From tree architecture to tree training--An overview of recent concepts developed in apple in France. J Korean Soc Hortic Sci 43(6): 782-788.
23. Lauri PÉ, Térouanne É, Lespinasse JM, Regnard J-L, Kelner JJ (1995) Genotypic differences in the axillary bud growth and fruiting pattern of apple fruiting branches over several years-an approach to regulation of fruit bearing. Sci Hortic 64: 265-281.
24. Lopez G, Favreau R, Smith C, Costes E, Prusinkiewicz P, DeJong TM (2008) Integrating simulation of architectural development and source-sink behaviour of peach trees by incorporating Markov models and physiological organ functions sub-models into L-Peach. Funct Plant Biol 35: 761-771.
25. Maillette T (1990) The value of meristems states as estimated by a discrete Markov-chain. Oïkos 59: 235-240.
26. Martinez-Vilalta J, Vanderklein D, Mencuccini M (2007) Tree height and age-related decline in growth in Scots pine (Pinus sylvestris L.). Ecologia 150: 529-544.
27. Nozeran R (1984) Integration of organismal development. In: Barlow PW, Carr DJ (eds) Positional controls in Plant Development. Cambridge University Press, Cambridge, pp 375-401.
28. Renton M, Guédon Y, Godin C, Costes E (2006) Similarities and gradients in growth-unit branching patterns during ontogeny in 'Fuji' apple trees: a stochastic approach. J Exp Bot 57: 3131-3143.
29. Ron D, Singer Y, Tishby N (1996) The power of amnesia: Learning probabilistic automata with variable memory length. Mach Learn 25: 117-149.
30. Sabatier S, Barthélémy D (1999) Growth dynamics and morphology of annual shoots, according to their architectural position, in young Cedrus atlantica (Endl.) Manetti ex Carrière (Pinaceae). Ann Bot 84: 387-392.
31. Solar A, Stampar F (2006) Stability of the annual shoot diameter in Persian walnut: a case study of different morphotypes and years. Trees 20: 449-459.
32. Sterck FJ, Bongers F, During HJ, Martinez-Ramos M, De Kroon H (2003) Module responses in a tropical forest tree analyzed with a matrix model. Ecology 84: 2751-2761.
33. Suzuki A (2002) Influence of shoot architectural position on shoot growth and branching patterns in Cleyera japonica. Tree Physiol 22: 885-890.
34. Verdú M, Climent J (2007) Evolutionary correlations of polycyclic shoot growth in Acer (Sapindaceae). Am J Bot 94: 1316-1320.
35. White J (1979) The plant as a metapopulation. Annu Rev Ecol Syst 10: 109-145.
36. Wilkie JD, Margaret S, Olesen T (2008) Regulation of floral initiation in horticultural trees. J Exp Bot 59: 3215-3228.